TCONS_00015454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015454
Unique NameTCONS_00015454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015454 ID=TCONS_00015454|Name=TCONS_00015454|organism=Clytia hemisphaerica|type=transcript|length=1884bp
ACGATGGTCAATGACGGAATGTTGAGCCGTCAAAATTGAGGTGCCGAGTC
GAAGGTCACAAGATTCTAAATTATATACTGGACTAAAACACGTAAAGACT
ACAACTATAAACAGCTATAAAAGGAGAAAACATTGAACTACAGACGGAAG
AAGCACAAGATGGGGCGCAAAGAGCTGAAAATCTATTTGGATAACGAAAA
GGAATGTTATTTTGCCGGTGAACAATTGACAGGTCACGTGACATTGGAGC
TGAATGAGCCAACGAGCGTTTTGAGAATCATTCTCTACGTCAAAGGAAAA
GGAATTTGCAAAGTGGGAAATTCCTGCAAAGAAGTCTTTTACAAAAATGA
TGTCACACTGTACGGAACAATGCCGGGACAACACGCGGTAACACGACAGC
ACCCTGTCGGTAAACGAAATTATCGGTTTAATTTTCTGCTACCTACGGAA
TTACCGAGTTCGACGGTTGAAGGGGGAGGATTGATCAAGTACACACTGAC
AGcGAAAGTCGTATTCAAAGCACTCCTTTCAAGTGATTGGCAAATGAAGA
AAAACTTCCAAGTCAAACAAATCTTGGATGCAAACATTCCCAATTACGAT
TTGGAACACGTGCACACAGTTAAAAGAGTGGCCAGTATTTTCACCAGTCA
AaagaaacttgaaaaagaagATTTGCTGATGAGTTTACAGCGTGGTGTGT
ACTGCCCTGGAGAAACCATCAAGTTGAATTTACAATACAAGTACGTTGAA
GCGAGAAAGATGGGTTTGGTCAAATGCCGGTTAAACAAATATAaacgatt
gaataaaaaagaaaacaaaaatatttacaaaaagacAGTCAAAGAAAAGA
ATGACAGTAAACGATGCGATGATAAAATTTACCAACGAAATATTTCGATA
GAAGTTCCGGAAAAACTTACGCCCACCAACACCCTTACAAACGCCCTCTG
CATTGAGTATGTTTTACACGTTAAAGTGGAAGGGTACAAAGAGTGGAAAT
TACCCATTGTTATTGGAACAATACCCTTCGATGAAAACagacaacaacag
caacaacatcAGATAAACACGCAagGACAACCACAAGTTATAACCGAGCC
GTCAACCTCAAGACCGACCGCCCCTCCTTCTGCCCCTCCTTCTGCCCCTC
CTTCTGCCCCTAGTGCACCAGTGGAAGTTCCATCGGGTAACAGCCTCATC
TATCcgataattcatgatattggTGGTGAAATCCAATGTGAATTTTTCCA
CCCACCACCCTACGTTCCAGAAAACGAATTTGATCTACCGCCTTCTTATG
ATGAAGTGTTACAAGAAAATCCAACGCCTGGCTCGTCCGCCCCATCCGCC
CCATCCGCCCCTCACGGACAACAATTGATCGCTGCACAGTGATCATTAAC
AGCGTTTATGGAAGGTGGTAGTTCATTTGATTTACGACATCATCAGTGAA
TATGCTGGAATCTATTCAAACGATAATATGTTGGTTCCTGAAAGATTTCG
TGcatttttagcaaaatttgaGTGCTTTTGCGCTTTCTTGCAGGCAAGAA
TCGTGAAAGTAGGATGTCTTTGGAATGATGTAAAATAGTTCTGTTACTTT
GAAAACGAATAGTATTCTACGAAATGATCGAATGTATCTGAGTTGCTATG
GGTTGCTATGGGTTGCTATGGGTTGCTAGAAGCTTCAGTTTTCATGCTGG
TTCGTGAAAAAGTCCATAAAATCCTTTTCCGTTAGTTTAATATGAAGCCT
TTAttgtgaatttgaaaaatctttcttaaaatttatttagaataaaattt
ttgTATAGTATTTGTTTTTATTACTGAAAAACTCTcaagaaatatagaaa
aaactttttactttgtaaaataataaaaaagaac
Run BLAST on NCBI

transcript from alignment at sc0000211:58615..63950-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015454 ID=TCONS_00015454|Name=TCONS_00015454|organism=Clytia hemisphaerica|type=transcript|length=5336bp|location=Sequence derived from alignment at sc0000211:58615..63950- (Clytia hemisphaerica)
ACGATGGTCAATGACGGAATGTTGAGCCGTCAAAATTGAGGTGCCGAGTC
GAAGGTCACAAGATTCTAAATTATATACTGGGTAAGAAAAGATAGATGAG
GGGGGGGTACTGTATATTTGAAAAATTTTGATTCGTTATCTTTATTCAAA
CAGCAATAAGTACAATATCTGCAGAGGTTAAATTCATTCGAAATTATGGT
GGCACACTTTGAGCATGATTGTCTTCGAACTTTCGAAAACAACAAATTAA
TAAATTTTACAAACGAGCAGAACAAGAGAGATTGAGTCTTTTTCGTTCTT
GGTTGCATGTTCTAATGTTTTCTAAAGAAATTCTATTTAATTTTTGAATA
TTAATTGAAAAAAATAAACTCTGAGTTTGATGTAATCACGTACACAATTA
GCCATCTGATGGAAATACGACAGTCCTTGGTTTGAAATCTTAAATTAAAG
AGAAGGTTTTTTGGGTAACTTTTTATCGCTCATGGGTAACAGAAAATGTG
TTTGAATTTTTGGGGCTTCAAAGGGCTTTCATTCATTTATTAGGGCACCA
TTTGGTCATTGACGTTACAAAACTCCATTGGCTTAATGGAGAGACATAAC
TCAGTTTCTATCTTATCTGCTTTTCTAAGAATCTTGATTTGGGTAGGCGA
GGTAACGATCAATATTCTCGCTAAATAAAAATATAAAGACAGCTGATTCT
ATAATCACAATATTCTCCTATTTTTTACTTCATAATTTCTCGAAAGTGAA
GATTTATGTAAATAGAAATTGAAGATTTACTCTTCTCACTTTTCACTTCT
TGATATTTGAGCTTAGAGACATTAAGCTTTTTGGCACCGTTATCCCTCAG
TTTTTCTCTCGTTTGACGAAGTTGGAGTTGTTTTGAAGTGCGGTGAATCN
TGACAACGTTATTCCTCAGTTTTTCTCTCGTGTGACGAAGTTGGAGTTAT
TTTGAAGTGCGGTGAATGTTGTTTACATTTGGACTTCAGTTTGACTTTTC
TCCCCTCGCCACAGACTAAGATTATAACCAACTCTTGGCTTTTTTGTTTC
TGCTTTACAACTCTCCCCGTTTTAATTCCTTAGACTAAAACACGTAAAGA
CTACAACTATAAACAGCTATAAAAGGAGAAAACATTGAACTACAGACGGA
AGAAGCACAAGATGGGGCGCAAAGAGCTGAAAATCTATTTGGATAACGAA
AAGGAATGTTATTTTGCCGGTGAACAATTGACAGGTCACGTGACATTGGA
GCTGAATGAGCCAACGAGCGTTTTGAGAATCATTCTCTACGTCAAAGGTA
TCGTAAATTTTTCCTTTTAGCTAAGACTTTTATTTCCTTGATAAAAACAC
CCCTGTGTCACGTCACAGACCGGGTAGGACCCCCTACCCCATTGAAAATT
AGGCTAAAATTTCGTCCCTGATGTGGAAAATAACCTACAATTTAAGCTCC
TCTGGGAAATTGATTTTGTTTTCATCCCCATTTGAAATTCGATGGAAAAA
TTACACTCCAGATTCATCCCGACTTTTTGACCTGGGAATTTCTGTCCCCA
CTAAGGATTTCGATTGAAATTTTCATCCAATTGTGGGAAGAAGCTCCTGA
AAAAGTGGTATATAAGAAGACTGTGATGTTGTAGTAAACATCCCTGTCTG
AGTGGCTGGAAACGTATACATGTTGATGTGAAGAGTCAGATTCGCAGCCA
AAACTTCCACCGGGTTTCTTAAAATACTGTCTTCAAATGGTGTAGTTTGA
TAAAAGGTTCGATTGATAGCATTCTAAATCTGAAATTTGATTTAAGGATA
TTTTTCGAAGCTTCGAAAGTCCTATATACTATCTCGGCTGTTTTTTAAGT
CCAATTACAGTGAGATTTAGATAACGGACATTTTACCGTAACAGAGAAAG
TTAACTTAAATGATAGGTAGTCCACCTTTCACTTCGACACTGCTTCAAAC
ATTTCCTTCATTTTCATCAGGAAAAGGAATTTGCAAAGTGGGAAATTCCT
GCAAAGAAGTCTTTTACAAAAATGATGTCACACTGTACGGAACAATGCCG
GGACAACACGCGGTAACACGACAGCACCCTGTCGGTAAACGAAATTATCG
GTTTAATTTTCTGCTACCTACGGAATTACCGAGTTCGACGGTTGAAGGGG
GAGGATTGATCAAGTACACACTGACAGGTTTGTATTTCTTTAAGTATTTT
TTGATGTTTTTACATTTCTTAATCTTACCAAAGCTTGCTATTCAGTAACG
TAGACAGGAGGGGCGAAAATTTGTGTAGTTAATTAATACCATGAATAGAT
AATTACAGTGTCATAAAAATCTGCTCTTCTACAACCAAGGGAATTAAGAT
TCATTTTTAGAAACTTTCCAGCTTTTTGGTGATATACTAAACTTAAACTA
AAGCTAGAACTTCACTCACCAGGTAACAAGAAGTTTAAATGAATGATCTC
CTAGTAAGGACGAATTTCTATTGATAAAGATGCTTATAATAGTCCGTATA
AAAACCATCGGTCTCAACATAATTTACTTTTTTTTACTTTTCAGCGAAAG
TCGTATTCAAAGCACTCCTTTCAAGTGATTGGCAAATGAAGAAAAACTTC
CAAGTCAAACAAATCTTGGATGCAAACATTCCCAATTACGATTTGGAACA
CGTGCACACAGTTAAAAGAGTGGCCAGTATTTTCACCAGTCAAAAGAAAC
TTGAAAAAGAAGGTGAATACGATATGATCATATTTCTTCAAACATGACTA
AATACTTCCTTGAGTGATTTTGGTTCTTACTTACAGAACACACAGATTTG
ACTGCTATTCGTCAGAGAATTCAGCATCTTTCAACCCTGCAAGTGTGGTT
TTGTTATATTTTTGTTGCTGAGTCTTTTTAAAGATGAATTATGTTAGATT
TAGTCCATTGCCTAGAATTTAACCATGAAAAATGAGAATACCTCTTTTTC
AAAAGATATTAGTTTGGAAACAGTTCTCAATGCACCATTGTTGACATTTT
TACGAATTTTTCTTGTTAAGATTTGCTGATGAGTTTACAGCGTGGTGTGT
ACTGCCCTGGAGAAACCATCAAGTTGAATTTACAATACAAGTACGTTGAA
GCGAGAAAGATGGGTTTGGTCAAATGCCGGTTAAACAAATATAAACGATT
GAATAAAAAAGAAAACAAAAATATTTACAAAAAGACAGTCAAAGAAAAGA
ATGGTAAGTCATCATTTCTACAACTTATTATGTTATGACCGAAACCTTGA
AGCTATTGGCAGCAGGATTTTTATGAAAACCCTATCTCCACATGAACTCC
AAAACTCCAAAAAGTAGTGGCTTGTTTACCAGTATTTATAGTTTCTTTCA
TTGAAAAGTCAGGTGTGTCACCGGTACCCTGAGCTTCCACTGAACATGTT
GCCTTCATCAAACTCTTAGTCAAGCATGCTAGACGACTAATTTAGACATC
AAGGAACAATAAGCAAAAAATAATGAAAGAAACAAATTTTTTCCTTTTAC
GAACTGATATTATCCCATTGCATTATAACATAACATCGTAATGACACCCA
TACTATAATACACGGATTATAAACAATACCCCGCCGATCTATTGAACTCT
AAAAACCTCTGAAAAGTGTCACAAATCAAACCAATCAAAGTCCATGAAAA
TGTGCATTGGAGAAGATGAACTATATACAGTTTTGTTCAATAAACTGAGA
TTTTCATCTTGATTCATTTCACAGACAGTAAACGATGCGATGATAAAATT
TACCAACGAAATATTTCGATAGAAGTTCCGGAAAAACTTACGCCCACCAA
CACCCTTACAAACGCCCTCTGCATTGAGTATGTTTTACACGTTAAAGTGG
AAGGGTACAAAGAGTGGAAATTACCCATTGTTATTGGAACAATACCCTTC
GATGAAAACAGACAACAACAGCAACAACATCAGATAAACACGCAAGGTAA
AGTTTTTTTTGAGCTTTCTTGAGCTTCATTAAATATTATTACTTCCTTCC
ATTTTTGTATTTTTAAGTTGTCGTCTTCTATGTCGTAGAGAAGTTGAATG
CTTTGTCATTTGAGAAAGTTTTTGGATTGTTGGATAACGTCAATCTTTCT
TTTTATGAGACAGAGATATTATATGAGATTCTCATTTGAGACAGGGGTGA
GCATAACGGGAAACTTTTAGTTAAAACAAGGGTAAAATCTGACTTGATCA
TGGGTGTCATGTTATGAGAAACCTTCATTTAGCTCATGCACTTAATCCGA
TGTGAACTCATTTTAAACAGGGAGATTGGATTATATTAAATTTTCGTATG
AGACAAGGATATCAAACCAAGTGAAATTTCCCAAGAGACAGGGGTGTAGT
TTTACGTACAGTTTTTATTGAAGACAAGGTTGTGAAATTGAAATTTTCAT
GTCGTAAGATTCGTGAGATTTGGAATCATTTTCATGAGATAATGGTGTCC
TAACATACTATTCGGAAATATATTGTTTGAAAAAACGGATGGTTTATATT
TACTTTAATTTTTCTCTTTTTCTCCAGGACAACCACAAGTTATAACCGAG
CCGTCAACCTCAAGACCGACCGCCCCTCCTTCTGCCCCTCCTTCTGCCCC
TCCTTCTGCCCCTAGTGCACCAGTGGAAGTTCCATCGGGTAACAGCCTCA
TCTATCCGATAATTCATGATATTGGTGGTGAAATCCAATGTGAATTTTTC
CACCCACCACCCTACGTTCCAGAAAACGAATTTGATCTACCGCCTTCTTA
TGATGAAGTGTTACAAGAAAATCCAACGCCTGGCTCGTCCGCCCCATCCG
CCCCATCCGCCCCTCACGGACAACAATTGATCGCTGCACAGTGATCATTA
ACAGCGTTTATGGAAGGTGGTAGTTCATTTGATTTACGACATCATCAGTG
AATATGCTGGAATCTATTCAAACGATAATATGTTGGTTCCTGAAAGATTT
CGTGCATTTTTAGCAAAATTTGAGTGCTTTTGCGCTTTCTTGCAGGCAAG
AATCGTGAAAGTAGGATGTCTTTGGAATGATGTAAAATAGTTCTGTTACT
TTGAAAACGAATAGTATTCTACGAAATGATCGAATGTATCTGAGTTGCTA
TGGGTTGCTATGGGTTGCTATGGGTTGCTAGAAGCTTCAGTTTTCATGCT
GGTTCGTGAAAAAGTCCATAAAATCCTTTTCCGTTAGTTTAATATGAAGC
CTTTATTGTGAATTTGAAAAATCTTTCTTAAAATTTATTTAGAATAAAAT
TTTTGTATAGTATTTGTTTTTATTACTGAAAAACTCTCAAGAAATATAGA
AAAAACTTTTTACTTTGTAAAATAATAAAAAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008627XLOC_008627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015454-exon-sc0000211-1575043694:63870..63950TCONS_00015454-exon-sc0000211-1575043694:63870..63950Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:62654..62867TCONS_00015454-exon-sc0000211-1575043694:62654..62867Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:61774..61980TCONS_00015454-exon-sc0000211-1575043694:61774..61980Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:61239..61406TCONS_00015454-exon-sc0000211-1575043694:61239..61406Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:60748..60930TCONS_00015454-exon-sc0000211-1575043694:60748..60930Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:60005..60226TCONS_00015454-exon-sc0000211-1575043694:60005..60226Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1575043694:58615..59423TCONS_00015454-exon-sc0000211-1575043694:58615..59423Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:63870..63950TCONS_00015454-exon-sc0000211-1510915933:63870..63950Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:62654..62867TCONS_00015454-exon-sc0000211-1510915933:62654..62867Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:61774..61980TCONS_00015454-exon-sc0000211-1510915933:61774..61980Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:61239..61406TCONS_00015454-exon-sc0000211-1510915933:61239..61406Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:60748..60930TCONS_00015454-exon-sc0000211-1510915933:60748..60930Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:60005..60226TCONS_00015454-exon-sc0000211-1510915933:60005..60226Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1510915933:58615..59423TCONS_00015454-exon-sc0000211-1510915933:58615..59423Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:63870..63950TCONS_00015454-exon-sc0000211-1491911889:63870..63950Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:62654..62867TCONS_00015454-exon-sc0000211-1491911889:62654..62867Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:61774..61980TCONS_00015454-exon-sc0000211-1491911889:61774..61980Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:61239..61406TCONS_00015454-exon-sc0000211-1491911889:61239..61406Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:60748..60930TCONS_00015454-exon-sc0000211-1491911889:60748..60930Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:60005..60226TCONS_00015454-exon-sc0000211-1491911889:60005..60226Clytia hemisphaericaexon
TCONS_00015454-exon-sc0000211-1491911889:58615..59423TCONS_00015454-exon-sc0000211-1491911889:58615..59423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:58615..63950 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.44083	3.59969	1.84775	5.82765	1.45673	0.902848	1.47136	3.44082	0	2.37597	1.10994	0.968986	1.78821	2.36531	0.966023	2.43642	0.426566	3.61806	1.78969	4.44711	0.392374	0	8.50054	5.43143	9.05965	12.2716	18.7294	14.4694	19.0255	8.838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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