TCONS_00015451 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015451
Unique Name	TCONS_00015451
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1922

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000211:53518..58416-
coding sequence from alignment at sc0000211:53518..58416-

transcript sequence

>TCONS_00015451 ID=TCONS_00015451|Name=TCONS_00015451|organism=Clytia hemisphaerica|type=transcript|length=1922bp
AGGTCACCTCTGCTGTCACCTTCTAAAaacaatcgatgacgtcatctttt
acaaaattgattggAAACTTTCTAACAGAGAACAAAGGATGGACAATATA
ATCTCGTGTttattttttgtcaactttttgcataaaattttgatttaaca
gaaacataAAAATCATGGGCTGCGAGTGGAGTGCAGCCAACCATACCTAC
TTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTACTTCGTTCCAAATAC
ACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGGAACGGCTGGTTTCT
TTTTCATATTATGGGCTGGTATCATTCTTTGTTCGCCTGACACACTAGCC
TGGAATCTTGTCTTTCTTGCATTCAATTATGGACATGCAGCCTGGATGCT
TTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCATGAGGTGTTGTATG
GTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAATACAAATGTGTG
GCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCACGTATATGCACA
TGAAGACGAAACTGATGGAGAACACATCACCATTCTCACCAATGGAAGCT
TGCGAGTGATGAAAGCTGGCAATATCATGCATCGTTTGAAACCGTATGAA
TTTTTAGATTCACCAGAATGGATCGCTAGCACCACAGGAAATATGGCTGC
TCCTGTCACCTTTCAAGTGACGTTGATCTCTGACGGATGTACGGTAATCA
CGTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAACCTCACCTC
AAAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAAGAAACTGTT
CAAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTAACCAATCAC
TGAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAATTCCACAAAT
CAATTTGATGTTTACGCTTATAACTCGGAAACAGAATCTTTGATAGCGAA
AGACGAAAAATCTTCTTTGCTGGAAATCAAGactaaataaagaaaaatga
gcGAAACACTTCAAAAGAAGTCAAGGGTGGTCACGTGTAATACGCAGCAA
GAAGTCAGCTACGagaaaagtaaatatttcaTAACTTCTTGAATTTAATG
TCagcgaaaattttcatttttatattacCTTAACAATTTTTTGTAACTAT
TTACAATATTCTACAACAAGAAAAgaataattattttaaaaaatatatat
aataatattttatacaGCCCAATACAAGCaaagaaaggaaaaacaaatta
ttCGTAGAACCCTCCAGAAGTGCTTGGAACAGAGTCACTTTCCTTTTGAT
CCACAACTTCTGAAAGAATTTCTTCCAAGTTGCGACTACGCTCCATTTCA
AGCGCTACAGCGTCCTTTAATGTTTCATTTTGTTTCTGCAACAAACTCAT
TCGTTCTTTAACCATCTCTTCTTTTACGCGTCGCTGTTCGCGTGATGCAC
GCGCGGCCGCGTTGTTTCGCTTTCGTCGTTCCCAATAGCTGTCATCTTTC
ATGTGACCCTCAACATGAGTTTTCTTCGTTTTCGAACCCATCGGCTTAGG
GTTGTAAACATAAcatctttttaacttttgactttttcgatCCGCGTAGG
TTGAATTTTCCATAGTTTCCGTACCTTTTTCTTGCAAAGAAAGATAATTT
ATAACCAACAAGAAATCACTCTACCTCGTTCAAAACACTTTTTACACTAC
TTTCTTGTTGAAAATATTCCCTGTTACTCttacaaacttttttcttgttA
TCAAGATGAAATATTTATAAGCTAAAGCCTGATGAAAACACGTGAATAGA
GAAGTTTCTCCCTCTAGAATTACTTGAATCACGTTTCTTATATATCGTTT
ATCTTTTCATATCATTCAAAAC

Run BLAST on NCBI

protein sequence of TCONS_00015451-protein

>TCONS_00015451-protein ID=TCONS_00015451-protein|Name=TCONS_00015451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MGCEWSAANHTYFQIANLFLAFTYFVPNTLSGLLLLRFFLGTAGFFFILW
AGIILCSPDTLAWNLVFLAFNYGHAAWMLYKRRKIHFVEEHEVLYGAMFE
QLGVPRWQYKCVADSSEVMELERDHVYAHEDETDGEHITILTNGSLRVMK
AGNIMHRLKPYEFLDSPEWIASTTGNMAAPVTFQVTLISDGCTVITWKRR
DLLRALRSEPHLKNIFDSLIGQDVAKKLFKSQTNPSTGFNSSNQSLNATS
PKGYGSTKNSTNQFDVYAYNSETESLIAKDEKSSLLEIKTK

Run BLAST on NCBI

transcript from alignment at sc0000211:53518..58416-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015451 ID=TCONS_00015451|Name=TCONS_00015451|organism=Clytia hemisphaerica|type=transcript|length=4899bp|location=Sequence derived from alignment at sc0000211:53518..58416- (Clytia hemisphaerica)
AGGTCACCTCTGCTGTCACCTTCTAAAAACAATCGATGACGTCATCTTTT
ACAAAATTGATTGGAAACTTTCTAACAGAGAACAAAGGATGGACAATATA
ATCTCGTGTTTATTTTTTGTCAACTTTTTGCATAAAATTTTGATTTAACA
GGTATCACATTATCAACATCTGATATTCTAATCTTTCAAAAAACGAATTT
CCAAATGATGAAATTCAATCTTTGGACGAAAATAAAATGATAAATGAAAC
TGCAGTTGACACAAGAGGGATCGAAGGGGAGTAATATCGTGTGTTGATGG
GTTTGAAGGCCGACCTTGTGTTTTCTGCAAGAGCGTTGAATATTTTTTGA
ATTGAATTTGTGGCTATATTTGTGGCATGTTAAAGGAATTACCCTACACT
AGATATGAACAACCATGACGAAAAACTGGCAACTCTGATGAGAGCTCTAA
ACTTTGTATTCATTGCCAAATGATAATATATAATACTTTTTTTTCAGAAA
CATAAAAATCATGGGCTGCGAGTGGAGTGCAGCCAACCATACCTACTTTC
AGATTGCCAACCTTTTCCTTGCGTTCACGTACTTCGTTCCAAATACACTG
TCCGGACTTCTATTACTCCGCTTTTTTCTGGGAACGGCTGGTTTCTTTTT
CATATTATGGGCTGGTATCATTCTTTGTTCGCCTGACACACTAGCCTGGA
ATCTTGTCTTTCTTGCATTCAATTATGGACATGCAGCCTGGATGCTTTAC
AAACGAAGAAAAATCCACTTTGTTGAGGAGCATGAGGTTTGTGAAGTTTT
TGAATGGCTTTTAAGTAGCATAAGAAATTAGATACAGTAGAGTAAATCAA
ATGTTTACCTTAACTCGGACAGGTTTTCTCGTCCCTCCAGTTAACAATGC
CTTATAAACCAATCTTTATAACTCGAAATTTCCTTAACCCGAACAAATTT
GTGTCCCCCCGTGCATGTTCCAGTTAATGAGTTAACGAGACTCCACTGTA
TAATGATACTTCCTTTCAATGTTCACCCCTGTATCCGTATGTTAAATATT
GTATGTTCACTGTATCAGTTTTTGTTTGAATACCTACCTAAATTATCTTT
TCTCCATTTTTNCCCTGTATCAGTATGTTAAATATTGTATGTTCACTGTA
TCAGTTTTTGTTTAACTACCTACCTAAAGATCTTTTCTCCATTTTTTTCA
GGTGTTGTATGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAAT
ACAAATGTGTGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCAC
GTATATGCACATGAAGACGAAACTGATGGAGAACACATCACCATTCTCAC
CAATGGAAGGTATAGCCGCCCTCTCTCCCTTGAAAATACCATATTACACC
CTCTTCTCACAGGTCCGGTAGGGTTTTTTCAGCCAGTGGGGATAAAAAAA
CGGACTGAAACTCACTGGGGATTGATATTTCCATTATTTTTATGGCTGGG
AATTTCAATTCTTTTGTTTTCAAGTCAGAGAATTCAGTAAGGATGGGAAA
AATATACCGGGTGCGCCACAAAAAAGTTTCTGTCTTTAAAACTAATTTTC
TCGAAATCTGAAAATTTTAAAAGAAACATTCCTATTCCATTAGAAAGGAG
AAAGGCAAACTTAAATTTTGATGGGTCGTTTATTAAATCCGGTTCATTAG
ATCGAAAGTTATACTAAATTGAATAAAAAAGTTACTTTCAGAAAGTGCGC
GAAAACGTTAAAAATCGACCTATCAAATTAAACAGAAGCATAATTACATG
ATGCATCAGTATTTTCGTTTCAGTCATTAAAAATAATAATTAGCTGTCTA
AATGACCTTTTGTTGTATAGAGGAAAAATTCATTAAAATACATCAAATAT
GGATTTCGAGGTATAACCAGGCTTACATAGACTTTATCCAGTCTAGAACC
AAAAATCTGAGGAAAGTTTCGGTAAAAGTAAATTAAAATGATTTTGATGA
AGATTTTAAACCCTTTCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTTT
TCGGGCACTTTCTGAAAGTAACTTTTTTATTCAATTTAGTATAACTTTCG
ATCTAATGAACCGGATTTAATAAATGACCCATCAAAATTTAATTTTGTCT
TTCTCCTTTCCAATGGAATATGAATGTTTCTTTTAAAATTTTCAGATTTC
GAGAAAATTAGTTTTAAAGACAGAAACTTTTTTTTGTGGCGCACCCGGTA
GTAAATGTTTTGCACTGAGGATTGGTTATTTTCAGTGGGTACAAAAGTTG
GAGGTTAATTTTCCACCGGGGATGATGTTTTGGCCAATTTTTCAGATGGG
AAGGGTTCCCAGTAGTCTGAATCTCCAAACCCTCTTACTTGAATGGTGCA
ACACATGACTTTCCAACAGCAAAATGTTGCTGCTCAAAATCATTAAATTA
TTGGACAAGCTTACTTTATCATTGGTTCTTTGCACGTCACATCCAAAATA
CAAAAGTTTCTCACCATATACTTCAATGTGATTCAACACCTAAAGACGGT
TGAAACGAGTTTTTTTTGAATGGATACTATTAACTGAGACATCGGGAAAC
ACTTCGACCTGTTACATTGAGGTTTCAAAAGTAAATGACAAGAAGGATTG
CGTGTTGTCTAAACGCTTCTCTATAAAAATATCCATAATGAAATCCGCCA
AAAAATTAAGAATATGTTTCAGTGACAGGTTAGTTATTTTACGTTATAGC
TTGCGAGTGATGAAAGCTGGCAATATCATGCATCGTTTGAAACCGTATGA
ATTTTTAGATTCACCAGAATGGATCGCTAGCACCACAGGAAATATGGCTG
CTCCTGTCACCTTTCAAGTATGTGCTGCATCTCCTTATCTTTGTACTTTT
GTCTAAGAACATTGGTTGGAAAAAAGCGTTTATCTCTCATAAAAACACCC
CTGTCACAGAACCGCTGGGACTCCAGCCCCACTGGAAAATATTTGGTCTC
CGGTGGGAAAAGTAGCCTACAACTTCATCCGCAACTTGGAAAATGACTTT
GATTTCCTCCTCCTAATCAAAAATTCAATGTAAAAAGTTGCACTCCAAAA
CCATCTCCACTAGACTCTTCGACGCAAGGAACAATTCCCATTGGGATTTC
AATTGGAAATTTTATCCCCGTTGTGGAAAAAAGTTTCACCGGGGTTACGA
GACAGGGGTGTCATAGAAATAAAAAAAATGTAATAATATCAGTGTTCACG
TGCTCACATCATCCAGATTGCACTTCATCTTTCAGGTGACGTTGATCTCT
GACGGATGTACGGTAATCACGTGGAAACGTAGGGATTTGTTACGTGCTCT
ACGTAGCGAACCTCACCTCAAAAACATCTTCGACTCTCTCATTGGTCAAG
ATGTTGCTAAGAAACTGTTCAAATCACAAACCAATCCGAGCACAGGATTC
AACAGCAGTAACCAATCACTGAATGCCACTTCACCAAAAGGTTACGGCTC
CACTAAAAATTCCACAAATCAATTTGATGTTTACGCTTATAACTGTAAGT
GAAAGTTTTTGAAAAATTTTCCTTTAAAAATAAGTTTTTAAGGATTTGAT
CTCTATCCATTTTTGTATGTGATCTATTTATAGATGCATCTGTTCGTGCT
TGTATGCACTTTGTGTTGTCAAGACAATCCCAGCGATCACAACACTTGCC
AATTTCAATTTCTCAGAATTTTTCATTTTAAGTCTTTCCTTTCTTTTTTT
AGCGGAAACAGAATCTTTGATAGCGAAAGACGAAAAATCTTCTTTGCTGG
AAATCAAGACTAAATAAAGAAAAATGAGCGAAACACTTCAAAAGAAGTCA
AGGGTGGTCACGTGTAATACGCAGCAAGAAGTCAGCTACGAGAAAAGTAA
ATATTTCATAACTTCTTGAATTTAATGTCAGCGAAAATTTTCATTTTTAT
ATTACCTTAACAATTTTTTGTAACTATTTACAATATTCTACAACAAGAAA
AGAATAATTATTTTAAAAAATATATATAATAATATTTTATACAGCCCAAT
ACAAGCAAAGAAAGGAAAAACAAATTATTCGTAGAACCCTCCAGAAGTGC
TTGGAACAGAGTCACTTTCCTTTTGATCCACAACTTCTGAAAGAATTTCT
TCCAAGTTGCGACTACGCTCCATTTCAAGCGCTACAGCGTCCTTTAATGT
TTCATTTTGTTTCTGCAACAAACTCATTCGTTCTTTAACCATCTCTTCTT
TTACGCGTCGCTGTTCGCGTGATGCACGCGCGGCCGCGTTGTTTCGCTTT
CGTCGTTCCCAATAGCTGTCATCTTTCATGTGACCCTCAACATGAGTTTT
CTTCGTTTTCGAACCCATCGGCTTAGGGTTGTAAACATAACATCTTTTTA
ACTTTTGACTTTTTCGATCCGCGTAGGTTGAATTTTCCATAGTTTCCGTA
CCTTTTTCTTGCAAAGAAAGATAATTTATAACCAACAAGAAATCACTCTA
CCTCGTTCAAAACACTTTTTACACTACTTTCTTGTTGAAAATATTCCCTG
TTACTCTTACAAACTTTTTTCTTGTTATCAAGATGAAATATTTATAAGCT
AAAGCCTGATGAAAACACGTGAATAGAGAAGTTTCTCCCTCTAGAATTAC
TTGAATCACGTTTCTTATATATCGTTTATCTTTTCATATCATTCAAAAC

Coding sequence (CDS) from alignment at sc0000211:53518..58416-

>TCONS_00015451 ID=TCONS_00015451|Name=TCONS_00015451|organism=Clytia hemisphaerica|type=CDS|length=4380bp|location=Sequence derived from alignment at sc0000211:53518..58416- (Clytia hemisphaerica)
CGGAAACAGAATCTTTGATAGCGAAAGACGAAAAATCTTCTTTGCTGGAA
ATCAAGACTAAATAAGTGACGTTGATCTCTGACGGATGTACGGTAATCAC
GTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAACCTCACCTCA
AAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAAGAAACTGTTC
AAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTAACCAATCACT
GAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAATTCCACAAATC
AATTTGATGTTTACGCTTATAACTCTTGCGAGTGATGAAAGCTGGCAATA
TCATGCATCGTTTGAAACCGTATGAATTTTTAGATTCACCAGAATGGATC
GCTAGCACCACAGGAAATATGGCTGCTCCTGTCACCTTTCAAGTGTTGTA
TGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAATACAAATGTG
TGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCACGTATATGCA
CATGAAGACGAAACTGATGGAGAACACATCACCATTCTCACCAATGGAAG
ATGGGCTGCGAGTGGAGTGCAGCCAACCATACCTACTTTCAGATTGCCAA
CCTTTTCCTTGCGTTCACGTACTTCGTTCCAAATACACTGTCCGGACTTC
TATTACTCCGCTTTTTTCTGGGAACGGCTGGTTTCTTTTTCATATTATGG
GCTGGTATCATTCTTTGTTCGCCTGACACACTAGCCTGGAATCTTGTCTT
TCTTGCATTCAATTATGGACATGCAGCCTGGATGCTTTACAAACGAAGAA
AAATCCACTTTGTTGAGGAGCATGAGCGGAAACAGAATCTTTGATAGCGA
AAGACGAAAAATCTTCTTTGCTGGAAATCAAGACTAAATAAGTGACGTTG
ATCTCTGACGGATGTACGGTAATCACGTGGAAACGTAGGGATTTGTTACG
TGCTCTACGTAGCGAACCTCACCTCAAAAACATCTTCGACTCTCTCATTG
GTCAAGATGTTGCTAAGAAACTGTTCAAATCACAAACCAATCCGAGCACA
GGATTCAACAGCAGTAACCAATCACTGAATGCCACTTCACCAAAAGGTTA
CGGCTCCACTAAAAATTCCACAAATCAATTTGATGTTTACGCTTATAACT
CTTGCGAGTGATGAAAGCTGGCAATATCATGCATCGTTTGAAACCGTATG
AATTTTTAGATTCACCAGAATGGATCGCTAGCACCACAGGAAATATGGCT
GCTCCTGTCACCTTTCAAGTGTTGTATGGTGCGATGTTTGAGCAACTCGG
CGTACCACGTTGGCAATACAAATGTGTGGCAGATTCGAGTGAAGTGATGG
AGTTGGAGAGAGATCACGTATATGCACATGAAGACGAAACTGATGGAGAA
CACATCACCATTCTCACCAATGGAAGATGGGCTGCGAGTGGAGTGCAGCC
AACCATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTACTT
CGTTCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGGAA
CGGCTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGCCT
GACACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACATGC
AGCCTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCATG
AGCGGAAACAGAATCTTTGATAGCGAAAGACGAAAAATCTTCTTTGCTGG
AAATCAAGACTAAATAAGTGACGTTGATCTCTGACGGATGTACGGTAATC
ACGTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAACCTCACCT
CAAAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAAGAAACTGT
TCAAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTAACCAATCA
CTGAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAATTCCACAAA
TCAATTTGATGTTTACGCTTATAACTCTTGCGAGTGATGAAAGCTGGCAA
TATCATGCATCGTTTGAAACCGTATGAATTTTTAGATTCACCAGAATGGA
TCGCTAGCACCACAGGAAATATGGCTGCTCCTGTCACCTTTCAAGTGTTG
TATGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAATACAAATG
TGTGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCACGTATATG
CACATGAAGACGAAACTGATGGAGAACACATCACCATTCTCACCAATGGA
AGATGGGCTGCGAGTGGAGTGCAGCCAACCATACCTACTTTCAGATTGCC
AACCTTTTCCTTGCGTTCACGTACTTCGTTCCAAATACACTGTCCGGACT
TCTATTACTCCGCTTTTTTCTGGGAACGGCTGGTTTCTTTTTCATATTAT
GGGCTGGTATCATTCTTTGTTCGCCTGACACACTAGCCTGGAATCTTGTC
TTTCTTGCATTCAATTATGGACATGCAGCCTGGATGCTTTACAAACGAAG
AAAAATCCACTTTGTTGAGGAGCATGAGCGGAAACAGAATCTTTGATAGC
GAAAGACGAAAAATCTTCTTTGCTGGAAATCAAGACTAAATAAGTGACGT
TGATCTCTGACGGATGTACGGTAATCACGTGGAAACGTAGGGATTTGTTA
CGTGCTCTACGTAGCGAACCTCACCTCAAAAACATCTTCGACTCTCTCAT
TGGTCAAGATGTTGCTAAGAAACTGTTCAAATCACAAACCAATCCGAGCA
CAGGATTCAACAGCAGTAACCAATCACTGAATGCCACTTCACCAAAAGGT
TACGGCTCCACTAAAAATTCCACAAATCAATTTGATGTTTACGCTTATAA
CTCTTGCGAGTGATGAAAGCTGGCAATATCATGCATCGTTTGAAACCGTA
TGAATTTTTAGATTCACCAGAATGGATCGCTAGCACCACAGGAAATATGG
CTGCTCCTGTCACCTTTCAAGTGTTGTATGGTGCGATGTTTGAGCAACTC
GGCGTACCACGTTGGCAATACAAATGTGTGGCAGATTCGAGTGAAGTGAT
GGAGTTGGAGAGAGATCACGTATATGCACATGAAGACGAAACTGATGGAG
AACACATCACCATTCTCACCAATGGAAGATGGGCTGCGAGTGGAGTGCAG
CCAACCATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTAC
TTCGTTCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGG
AACGGCTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGC
CTGACACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACAT
GCAGCCTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCA
TGAGCGGAAACAGAATCTTTGATAGCGAAAGACGAAAAATCTTCTTTGCT
GGAAATCAAGACTAAATAAGTGACGTTGATCTCTGACGGATGTACGGTAA
TCACGTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAACCTCAC
CTCAAAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAAGAAACT
GTTCAAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTAACCAAT
CACTGAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAATTCCACA
AATCAATTTGATGTTTACGCTTATAACTCTTGCGAGTGATGAAAGCTGGC
AATATCATGCATCGTTTGAAACCGTATGAATTTTTAGATTCACCAGAATG
GATCGCTAGCACCACAGGAAATATGGCTGCTCCTGTCACCTTTCAAGTGT
TGTATGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGCAATACAAA
TGTGTGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGATCACGTATA
TGCACATGAAGACGAAACTGATGGAGAACACATCACCATTCTCACCAATG
GAAGATGGGCTGCGAGTGGAGTGCAGCCAACCATACCTACTTTCAGATTG
CCAACCTTTTCCTTGCGTTCACGTACTTCGTTCCAAATACACTGTCCGGA
CTTCTATTACTCCGCTTTTTTCTGGGAACGGCTGGTTTCTTTTTCATATT
ATGGGCTGGTATCATTCTTTGTTCGCCTGACACACTAGCCTGGAATCTTG
TCTTTCTTGCATTCAATTATGGACATGCAGCCTGGATGCTTTACAAACGA
AGAAAAATCCACTTTGTTGAGGAGCATGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008626	XLOC_008626	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015451-protein	TCONS_00015451-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000211	supercontig	sc0000211:53518..58416 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0614387	0.047752	0	0.205276	0	0.637506	0.871465	1.23822	0.877747	1.43303	0.854736	1.63722	0.748439	0.740037	0.441206	38.7128	34.05	5.97572e-08	2.00613e-08	36.816	37.1453	16.6175	13.4366	13.0761	12.1101	68.0464	64.8592	28.5027	22.7576

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006916	Popeye_prot
IPR014710	RmlC-like_jellyroll
IPR018490	cNMP-bd-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

Blast

[Close]

BLAST of TCONS_00015451 vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.870e-31
Identity = 60/181 (33.15%), Postives = 101/181 (55.80%), Query Frame = 3

Query:  312 WAGIILCSPDTLAWNLVFLAFNYGHAAWMLYKRRKIHFVEEHEVLYGAMFEQLGVPRWQYKCVADSSEVMELERDHVYAHEDETDGEHITILTNGSLRVMKAGNIMHRLKPYEFLDSPEWIASTTGNMAAPVTFQVTLISD-GCTVITWKRRDLLRALRSEPHLKNIFDSLIGQDVAKKLF 851
            WA + +C+ D  +WN V     +     + Y+ R I F  E +VLY ++F+ LG+    ++ +A SSEV+ LE++H YA + +T  + +++L +G +RV   G  +H + P +FLDSPEW +           FQVTL ++  C  ++W+R+ L        ++  +F  LIG D+A KL+
Sbjct:   67 WAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEEG---IFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLY 244

The following BLAST results are available for this feature:

BLAST of TCONS_00015451 vs. Swiss-Prot (Human)

BLAST of TCONS_00015451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
POPD3	3.870e-31	33.15	Popeye domain-containing protein 3 OS=Homo sapiens...	[more]

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TCONS_00015451 (transcript) - C. hemisphaerica