TCONS_00015449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015449
Unique NameTCONS_00015449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015449 ID=TCONS_00015449|Name=TCONS_00015449|organism=Clytia hemisphaerica|type=transcript|length=1677bp
CCAACCATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTAC
TTCGTTCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGG
AACGGCTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGC
CTGACACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACAT
GCAGCCTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCA
TGAGGTGTTGTATGGTGCGATGTTTGAGCAACTCGGCGTACCACGTTGGC
AATACAAATGTGTGGCAGATTCGAGTGAAGTGATGGAGTTGGAGAGAGAT
CACGTATATGCACATGAAGACGAAACTGATGGAGAACACATCACCATTCT
CACCAATGGAAGATTCACCAGAATGGATCGCTAGCACCACAGGAAATATG
GCTGCTCCTGTCACCTTTCAAGTGACGTTGATCTCTGACGGATGTACGGT
AATCACGTGGAAACGTAGGGATTTGTTACGTGCTCTACGTAGCGAACCTC
ACCTCAAAAACATCTTCGACTCTCTCATTGGTCAAGATGTTGCTAAGAAA
CTGTTCAAATCACAAACCAATCCGAGCACAGGATTCAACAGCAGTAACCA
ATCACTGAATGCCACTTCACCAAAAGGTTACGGCTCCACTAAAAATTCCA
CAAATCAATTTGATGTTTACGCTTATAACTCGGAAACAGAATCTTTGATA
GCGAAAGACGAAAAATCTTCTTTGCTGGAAATCAAGactaaataaagaaa
aatgagcGAAACACTTCAAAAGAAGTCAAGGGTGGTCACGTGTAATACGC
AGCAAGAAGTCAGCTACGagaaaagtaaatatttcaTAACTTCTTGAATT
TAATGTCagcgaaaattttcatttttatattacCTTAACAATTTTTTGTA
ACTATTTACAATATTCTACAACAAGAAAAgaataattattttaaaaaata
tatataataatattttatacaGCCCAATACAAGCaaagaaaggaaaaaca
aattattCGTAGAACCCTCCAGAAGTGCTTGGAACAGAGTCACTTTCCTT
TTGATCCACAACTTCTGAAAGAATTTCTTCCAAGTTGCGACTACGCTCCA
TTTCAAGCGCTACAGCGTCCTTTAATGTTTCATTTTGTTTCTGCAACAAA
CTCATTCGTTCTTTAACCATCTCTTCTTTTACGCGTCGCTGTTCGCGTGA
TGCACGCGCGGCCGCGTTGTTTCGCTTTCGTCGTTCCCAATAGCTGTCAT
CTTTCATGTGACCCTCAACATGAGTTTTCTTCGTTTTCGAACCCATCGGC
TTAGGGTTGTAAACATAAcatctttttaacttttgactttttcgatCCGC
GTAGGTTGAATTTTCCATAGTTTCCGTACCTTTTTCTTGCAAAGAAAGAT
AATTTATAACCAACAAGAAATCACTCTACCTCGTTCAAAACACTTTTTAC
ACTACTTTCTTGTTGAAAATATTCCCTGTTACTCttacaaacttttttct
tgttATCAAGATGAAATATTTATAAGCTAAAGCCTGATGAAAACACGTGA
ATAGAGAAGTTTCTCCCTCTAGAATTACTTGAATCACGTTTCTTATATAT
CGTTTATCTTTTCATATCATTCAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000211:53518..57884-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015449 ID=TCONS_00015449|Name=TCONS_00015449|organism=Clytia hemisphaerica|type=transcript|length=4367bp|location=Sequence derived from alignment at sc0000211:53518..57884- (Clytia hemisphaerica)
CCAACCATACCTACTTTCAGATTGCCAACCTTTTCCTTGCGTTCACGTAC
TTCGTTCCAAATACACTGTCCGGACTTCTATTACTCCGCTTTTTTCTGGG
AACGGCTGGTTTCTTTTTCATATTATGGGCTGGTATCATTCTTTGTTCGC
CTGACACACTAGCCTGGAATCTTGTCTTTCTTGCATTCAATTATGGACAT
GCAGCCTGGATGCTTTACAAACGAAGAAAAATCCACTTTGTTGAGGAGCA
TGAGGTTTGTGAAGTTTTTGAATGGCTTTTAAGTAGCATAAGAAATTAGA
TACAGTAGAGTAAATCAAATGTTTACCTTAACTCGGACAGGTTTTCTCGT
CCCTCCAGTTAACAATGCCTTATAAACCAATCTTTATAACTCGAAATTTC
CTTAACCCGAACAAATTTGTGTCCCCCCGTGCATGTTCCAGTTAATGAGT
TAACGAGACTCCACTGTATAATGATACTTCCTTTCAATGTTCACCCCTGT
ATCCGTATGTTAAATATTGTATGTTCACTGTATCAGTTTTTGTTTGAATA
CCTACCTAAATTATCTTTTCTCCATTTTTNCCCTGTATCAGTATGTTAAA
TATTGTATGTTCACTGTATCAGTTTTTGTTTAACTACCTACCTAAAGATC
TTTTCTCCATTTTTTTCAGGTGTTGTATGGTGCGATGTTTGAGCAACTCG
GCGTACCACGTTGGCAATACAAATGTGTGGCAGATTCGAGTGAAGTGATG
GAGTTGGAGAGAGATCACGTATATGCACATGAAGACGAAACTGATGGAGA
ACACATCACCATTCTCACCAATGGAAGGTATAGCCGCCCTCTCTCCCTTG
AAAATACCATATTACACCCTCTTCTCACAGGTCCGGTAGGGTTTTTTCAG
CCAGTGGGGATAAAAAAACGGACTGAAACTCACTGGGGATTGATATTTCC
ATTATTTTTATGGCTGGGAATTTCAATTCTTTTGTTTTCAAGTCAGAGAA
TTCAGTAAGGATGGGAAAAATATACCGGGTGCGCCACAAAAAAGTTTCTG
TCTTTAAAACTAATTTTCTCGAAATCTGAAAATTTTAAAAGAAACATTCC
TATTCCATTAGAAAGGAGAAAGGCAAACTTAAATTTTGATGGGTCGTTTA
TTAAATCCGGTTCATTAGATCGAAAGTTATACTAAATTGAATAAAAAAGT
TACTTTCAGAAAGTGCGCGAAAACGTTAAAAATCGACCTATCAAATTAAA
CAGAAGCATAATTACATGATGCATCAGTATTTTCGTTTCAGTCATTAAAA
ATAATAATTAGCTGTCTAAATGACCTTTTGTTGTATAGAGGAAAAATTCA
TTAAAATACATCAAATATGGATTTCGAGGTATAACCAGGCTTACATAGAC
TTTATCCAGTCTAGAACCAAAAATCTGAGGAAAGTTTCGGTAAAAGTAAA
TTAAAATGATTTTGATGAAGATTTTAAACCCTTTCGAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAACGTTTTCGGGCACTTTCTGAAAGTAACTTTTTTATTC
AATTTAGTATAACTTTCGATCTAATGAACCGGATTTAATAAATGACCCAT
CAAAATTTAATTTTGTCTTTCTCCTTTCCAATGGAATATGAATGTTTCTT
TTAAAATTTTCAGATTTCGAGAAAATTAGTTTTAAAGACAGAAACTTTTT
TTTGTGGCGCACCCGGTAGTAAATGTTTTGCACTGAGGATTGGTTATTTT
CAGTGGGTACAAAAGTTGGAGGTTAATTTTCCACCGGGGATGATGTTTTG
GCCAATTTTTCAGATGGGAAGGGTTCCCAGTAGTCTGAATCTCCAAACCC
TCTTACTTGAATGGTGCAACACATGACTTTCCAACAGCAAAATGTTGCTG
CTCAAAATCATTAAATTATTGGACAAGCTTACTTTATCATTGGTTCTTTG
CACGTCACATCCAAAATACAAAAGTTTCTCACCATATACTTCAATGTGAT
TCAACACCTAAAGACGGTTGAAACGAGTTTTTTTTGAATGGATACTATTA
ACTGAGACATCGGGAAACACTTCGACCTGTTACATTGAGGTTTCAAAAGT
AAATGACAAGAAGGATTGCGTGTTGTCTAAACGCTTCTCTATAAAAATAT
CCATAATGAAATCCGCCAAAAAATTAAGAATATGTTTCAGTGACAGGTTA
GTTATTTTACGTTATAGCTTGCGAGTGATGAAAGCTGGCAATATCATGCA
TCGTTTGAAACCGTATGAATTTTTAGATTCACCAGAATGGATCGCTAGCA
CCACAGGAAATATGGCTGCTCCTGTCACCTTTCAAGTATGTGCTGCATCT
CCTTATCTTTGTACTTTTGTCTAAGAACATTGGTTGGAAAAAAGCGTTTA
TCTCTCATAAAAACACCCCTGTCACAGAACCGCTGGGACTCCAGCCCCAC
TGGAAAATATTTGGTCTCCGGTGGGAAAAGTAGCCTACAACTTCATCCGC
AACTTGGAAAATGACTTTGATTTCCTCCTCCTAATCAAAAATTCAATGTA
AAAAGTTGCACTCCAAAACCATCTCCACTAGACTCTTCGACGCAAGGAAC
AATTCCCATTGGGATTTCAATTGGAAATTTTATCCCCGTTGTGGAAAAAA
GTTTCACCGGGGTTACGAGACAGGGGTGTCATAGAAATAAAAAAAATGTA
ATAATATCAGTGTTCACGTGCTCACATCATCCAGATTGCACTTCATCTTT
CAGGTGACGTTGATCTCTGACGGATGTACGGTAATCACGTGGAAACGTAG
GGATTTGTTACGTGCTCTACGTAGCGAACCTCACCTCAAAAACATCTTCG
ACTCTCTCATTGGTCAAGATGTTGCTAAGAAACTGTTCAAATCACAAACC
AATCCGAGCACAGGATTCAACAGCAGTAACCAATCACTGAATGCCACTTC
ACCAAAAGGTTACGGCTCCACTAAAAATTCCACAAATCAATTTGATGTTT
ACGCTTATAACTGTAAGTGAAAGTTTTTGAAAAATTTTCCTTTAAAAATA
AGTTTTTAAGGATTTGATCTCTATCCATTTTTGTATGTGATCTATTTATA
GATGCATCTGTTCGTGCTTGTATGCACTTTGTGTTGTCAAGACAATCCCA
GCGATCACAACACTTGCCAATTTCAATTTCTCAGAATTTTTCATTTTAAG
TCTTTCCTTTCTTTTTTTAGCGGAAACAGAATCTTTGATAGCGAAAGACG
AAAAATCTTCTTTGCTGGAAATCAAGACTAAATAAAGAAAAATGAGCGAA
ACACTTCAAAAGAAGTCAAGGGTGGTCACGTGTAATACGCAGCAAGAAGT
CAGCTACGAGAAAAGTAAATATTTCATAACTTCTTGAATTTAATGTCAGC
GAAAATTTTCATTTTTATATTACCTTAACAATTTTTTGTAACTATTTACA
ATATTCTACAACAAGAAAAGAATAATTATTTTAAAAAATATATATAATAA
TATTTTATACAGCCCAATACAAGCAAAGAAAGGAAAAACAAATTATTCGT
AGAACCCTCCAGAAGTGCTTGGAACAGAGTCACTTTCCTTTTGATCCACA
ACTTCTGAAAGAATTTCTTCCAAGTTGCGACTACGCTCCATTTCAAGCGC
TACAGCGTCCTTTAATGTTTCATTTTGTTTCTGCAACAAACTCATTCGTT
CTTTAACCATCTCTTCTTTTACGCGTCGCTGTTCGCGTGATGCACGCGCG
GCCGCGTTGTTTCGCTTTCGTCGTTCCCAATAGCTGTCATCTTTCATGTG
ACCCTCAACATGAGTTTTCTTCGTTTTCGAACCCATCGGCTTAGGGTTGT
AAACATAACATCTTTTTAACTTTTGACTTTTTCGATCCGCGTAGGTTGAA
TTTTCCATAGTTTCCGTACCTTTTTCTTGCAAAGAAAGATAATTTATAAC
CAACAAGAAATCACTCTACCTCGTTCAAAACACTTTTTACACTACTTTCT
TGTTGAAAATATTCCCTGTTACTCTTACAAACTTTTTTCTTGTTATCAAG
ATGAAATATTTATAAGCTAAAGCCTGATGAAAACACGTGAATAGAGAAGT
TTCTCCCTCTAGAATTACTTGAATCACGTTTCTTATATATCGTTTATCTT
TTCATATCATTCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008626XLOC_008626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015449-exon-sc0000211-1575043694:57631..57884TCONS_00015449-exon-sc0000211-1575043694:57631..57884Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1575043694:57058..57215TCONS_00015449-exon-sc0000211-1575043694:57058..57215Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1575043694:55350..55408TCONS_00015449-exon-sc0000211-1575043694:55350..55408Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1575043694:54673..54931TCONS_00015449-exon-sc0000211-1575043694:54673..54931Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1575043694:53518..54464TCONS_00015449-exon-sc0000211-1575043694:53518..54464Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1510915933:57631..57884TCONS_00015449-exon-sc0000211-1510915933:57631..57884Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1510915933:57058..57215TCONS_00015449-exon-sc0000211-1510915933:57058..57215Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1510915933:55350..55408TCONS_00015449-exon-sc0000211-1510915933:55350..55408Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1510915933:54673..54931TCONS_00015449-exon-sc0000211-1510915933:54673..54931Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1510915933:53518..54464TCONS_00015449-exon-sc0000211-1510915933:53518..54464Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1491911889:57631..57884TCONS_00015449-exon-sc0000211-1491911889:57631..57884Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1491911889:57058..57215TCONS_00015449-exon-sc0000211-1491911889:57058..57215Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1491911889:55350..55408TCONS_00015449-exon-sc0000211-1491911889:55350..55408Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1491911889:54673..54931TCONS_00015449-exon-sc0000211-1491911889:54673..54931Clytia hemisphaericaexon
TCONS_00015449-exon-sc0000211-1491911889:53518..54464TCONS_00015449-exon-sc0000211-1491911889:53518..54464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:53518..57884 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0733303	0	0	0.108359	0	0.081716	0	0.35038	0	0.141736	0	0	0.479408	1.04678	0.350863	0.482824	0	0	0.337992	0.450516	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00015449 vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.004e-20
Identity = 32/96 (33.33%), Postives = 57/96 (59.38%), Query Frame = 3 
Query:  126 WAGIILCSPDTLAWNLVFLAFNYGHAAWMLYKRRKIHFVEEHEVLYGAMFEQLGVPRWQYKCVADSSEVMELERDHVYAHEDETDGEHITILTNGR 413
            WA + +C+ D  +WN V     +     + Y+ R I F  E +VLY ++F+ LG+    ++ +A SSEV+ LE++H YA + +T  + +++L +GR
Sbjct:   67 WAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGR 162

HSP 2 Score: 42.3578 bits (98), Expect = 8.004e-20
Identity = 23/68 (33.82%), Postives = 36/68 (52.94%), Query Frame = 1 
Query:  412 DSPEW--IASTTGNMAAPVTFQVTLISD-GCTVITWKRRDLLRALRSEPHLKNIFDSLIGQDVAKKLF 606
            DSPEW  +  T   +     FQVTL ++  C  ++W+R+ L        ++  +F  LIG D+A KL+
Sbjct:  182 DSPEWDSLRPTEEGI-----FQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLY 244
The following BLAST results are available for this feature:
BLAST of TCONS_00015449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POPD38.004e-2033.33Popeye domain-containing protein 3 OS=Homo sapiens... [more]
back to top