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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015443 ID=TCONS_00015443|Name=TCONS_00015443|organism=Clytia hemisphaerica|type=transcript|length=2143bp
gaaaaatattctaacgttctccttttttgtttttagtttcGTTTCGTTTT
GCGACTGTTGGTCGTCGCTGgtcaaaaatgaccaaaaagaaaatgttttc
gtGTTTTTGTTTACATGTGTTTTCATTTCACACTTGATACATAGTTTAGC
AGCTTCAGCCACCATGGTTCTTGATATATTGAGCTCACCAGAACATTTGC
AAATGTTACAATGCTACGGAGATGAGGAAACACAGGAGGAAAATCTCGTT
GGAAGGGATTAtgatattgagatttttcacGAGCCAGCGAATTTTAAACC
AAGATCGGGGAACGATCATGAGGCTCCGAAGCAGCGACGTGTGACGATTG
CTGATATGCCTGTCAATCATCCCCAATATCCTCCTGGGTATTCCGGCGAA
GggAGACAAAGATGCCGAAGCCGTTATTCAACCTTCATTGCGGGTATCAA
TCAATTCGATCCATACCAAGAGTTGACGGCCACGCAAATTGCTGCTTTTC
GTCAAGTCTTTGACATGGTTGACAGAGATGGTGGTGGAAGTATAGATGCC
AACGAACTGTATTACAGCATGAGAGATTTAGAATCTGGATTAATATTGGA
TGAGATCAAAGAGATTTTGGAAGAGCTTGATCGTGATGGGAACGGTGAAA
TTGATTTCGAAGAATTTCTTTACATGATGACCAGCATGAGCCTACAAATC
AAAGAGGCTCAAGAAGATAACGTATTGGTTAAACAAGGCAAACGTCGTCA
AAGCATCTTCTTTTCTGTCATTACAAAATTTGCTATGAAACATTCCTTGA
AAGAAATCGAGCATTACTACGCGAGCAAAGCTAAACGTTCTCCACACGTT
GTCGGACATTACATAGCTGGTGCTCGTGTCTTTGGCCTTACTGATAAAGA
ATTACGTAAAACATGGAAAGAATTCTCACACGCCAGTAAAGGGAAAGACT
CCCCTTACGCTCAGCCTTTGAACTTTATAGTCGATGATAACAATAACGga
aaaaagaagatgaagaaaacaGTCGTTCGTGCCATGCCGCGTGATAAAAA
AACAGAGTTGAAAACTTCTGTGGCGAATGATGATTCTCATAAGAAGTTCG
TCTTCAAATTGAAGAAAACTTCTAAACCCACCTCACCACAGCCTGTACAT
TGCACAAATACTGCCATAGATGCTGCTGCAAGTGAAAAGTCAGAACTCAA
TATAGAATGTTCTCCTCGCTCTGTATCTCCGTGTCCTGGGAGTCCATCTA
AATCGCCTAGTCCGTGCTCTGTGCGATCGACAAGCTCCACCCGAAGTGGT
GGCACCCTATCACCGACATTAGAAAAACGCGACGGTTGGACACCACGACA
TCGACTTCCAATGACTAAAGTGAAGCTTCCAAAATTTACGTATtctaaaa
aggaaaagaaactgGTCGTCAAAGATTTGGATAAGATTCGACAACGCGTC
AAAAAGACACGTGAAGCTTATCACGATGACCTcattaaagaaaaagaaga
cactgCAAAAGAATATTGGAAAAGTTTAAAAACGGGACAGATTTCTTCGG
AACGTTTACACACGAATTTCAAACGCGTTTTTCGTTGTTATTCGCCTTCA
AATGATGGCGAATTCGGTAATTTTGCATCGAAACATCAACGAAGTCCCGA
ACGTGCTTTGGATCTGCACCGTAGTAACGGAGGATTTGTACATTGAAAAC
AACAGTAACCAACATTttagtaaaatatctttcagcaaaatgactcaaaa
gATTACCTAAATTCTAACTATTTTCCTTGTAACAAATCAACTTCCAATCT
ACATCGATCGCTATGCTTTTTTCAGGGTCTGCAGACATACAAATTGAATA
ATTCGGGGATCATTGGGCTATTTCCAGAAAATAGTTCGTTCATTGAGAGT
GGAAGTtatgttatttttcaaatatctaCCCCTGGAAGTTTCGACACGTG
TTTTTCCCTGTTAGCCCTAATTGAGTCGTCAACTTTAAAAGGTTGTTGAG
CCAAAATTGACCATCAGTTTACggactaccttattacacaaatattacta
ggcaagtgttcaacggccttgaaattaacacgcacaaaattaacacgaat
tttatttgctttttcaaggacaccatggctggttttaattaag Run BLAST on NCBI transcript from alignment at sc0000211:316647..320378+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015443 ID=TCONS_00015443|Name=TCONS_00015443|organism=Clytia hemisphaerica|type=transcript|length=3732bp|location=Sequence derived from alignment at sc0000211:316647..320378+ (Clytia hemisphaerica)
gaaaaatattctaacgttctccttttttgtttttagtttcGTTTCGTTTT
GCGACTGTTGGTCGTCGCTGgtcaaaaatgaccaaaaagaaaatgttttc
gtGTTTTTGTTTACATGTGTTTTCATTTCACACTTGATACATAGTTTAGC
AGCTTCAGCCACCATGGTTCTTGATATATTGAGCTCACCAGAACATTTGC
AAATGTTACAATGCTACGGAGATGAGGAAACACAGGAGGAAAATCTCGTT
GGAAGGGATTAtgatattgagatttttcacGAGCCAGCGAATTTTAAACC
AAGATCGGGGAACGATCATGAGGCTCCGAAGCAGCGACGTGTGACGATTG
CTGATATGCCTGTCAATCATCCCCAATATCCTCCTGGGTATTCCGGCGAA
GGTTTGTAATCCGATCTTAAGTATCTAAGTTTATGtatattttttgcttt
attttcttCTCAGCATATCGAAGATTCTATTCAAAATGGGCTTTTCTCGT
CACTTGAAAGGTTTGAGATTTTCAAAACATGCAGatcttttctaaaattt
tagtttGAGATATATGACTTCCAGAAAgtaaacaatttaattttctgagA
TTTCAATCATCGTGTAGATAATATGATTAAAACTTTCGGCAAAAAGTGTT
ACAGATTTTCTTCGTTGATGCAGCATGGGCCGGGAGAGGAATAAAAAAAC
ACATTTATTCTCGCCAACGATAtcttttattcttattttcaaaattcagg
gAGACAAAGATGCCGAAGCCGTTATTCAACCTTCATTGCGGGTATCAATC
AATTCGATCCATACCAAGAGTTGACGGCCACGCAAATTGCTGCTTTTCGT
CAAGTCTTTGACATGGTTGACAGAGATGGTGGTGGAAGTATAGATGCCAA
CGAACTGTATTACAGCATGAGAGATTTAGAATCTGGATTAATATTGGATG
AGATCAAAGAGATTTTGGAAGAGCTTGATCGTGATGGGAACGGTGAAATT
GATTTCGAAGAATTTCTTTACATGATGACCAGCATGAGCCTACAAATCAA
AGGTGAGTTGTGATAGTATTCTTCAAATGACATCCTTTATACCTAAATCT
CATTTTAACATAGTATGGAGGCAATATTTACCAAATCCATGATATCCCTT
CAAACAAGCATTTGAATCTTTAAGACGTTGATTGCATTATCGATGGGTAT
TTAGCATTACTTTTAGACCCTTGGTTTATCATCACTTCTAGACCTTTGGC
TTGTTATTTGGACTACTCAGTACAAACTTTTCATTCATATCAACTTCAAT
CGATATCCTTTTTATTTTCAGAGGCTCAAGAAGATAACGTATTGGTTAAA
CAAGGCAAACGTCGTCAAAGCATCTTCTTTTCTGTCATTACAAAATTTGC
TATGAAACATTCCTTGAAAGAAATCGAGCATTACTACGCGAGCAAAGCTA
AACGTTCTCCACACGTTGTCGGACATTACATAGCTGGTGCTCGTGTCTTT
GGCCTTACTGATAAAGAATTACGTAAAACATGGAAAGAATTCTCACACGC
CAGTAAAGGGAAAGACTCCCCTTACGCTCAGCCTTTGAACTTTATAGTCG
ATGATAACAATAACGgaaaaaagaagatgaagaaaacaGTCGTTCGTGCC
ATGCCGCGTGATAAAAAAACAGAGTTGAAAACTTCTGTGGCGAATGATGA
TTCTCATAAGAAGTTCGTCTTCAAATTGAAGAAAACTTCTAAACCCACCT
CACCACAGCCTGTACATTGCACAAATACTGCCATAGATGCTGCTGCAAGT
GAAAAGTCAGAACTCAATATAGAATGTTCTCCTCGCTCTGTATCTCCGTG
TCCTGGGAGTCCATCTAAATCGCCTAGTCCGTGCTCTGTGCGATCGACAA
GCTCCACCCGAAGTGGTGGCACCCTATCACCGACATTAGAAAAACGCGAC
GGTTGGACACCACGACATCGACTTCCAATGACTAAAGTGAAGCTTCCAAA
ATTTACGTATTCTAAANAATAAATAGTCTTGCCTCTAGTATTCTTCAAAT
GACATCCTTTATACCTAAATCTCATTTTAACATAGTATGGAGGCAATATT
TACCAAATCCATGATATCCCTTCAAACAAGCATTTGAATCTTTAAGACGT
TGATTGCATTATCGATGGGTATTTAGCATTACTTTTAGACCCTTGGTTTA
TCATCACTTCTAGACCTTTGGCTTGTTATTTGGACTACTCAGTACAAACT
TTTCATTCATATCAACTTCAATCGATATCCTTTTTATTTTCAGAGGCTCA
AGAAGATAACGTATTGGTTAAACAAGGCAAACGTCGTCAAAGCATCTTCT
TTTCTGTCATTACAAAATTTGCTATGAAACATTCCTTGAAAGAAATCGAG
CATTACTACGCGAGCAAAGCTAAACGTTCTCCACACGTTGTCGGACATTA
CATAGCTGGTGCTCGTGTCTTTGGCCTTACTGATAAAGAATTACGTAAAA
CATGGAAAGAATTCTCACACGCCAGTAAAGGGAAAGACTCCCCTTACGCT
CAGCCTTTGAACTTTATAGTCGATGATAACAATAACGgaaaaaagaagat
gaagaaaacaGTCGTTCGTGCCATGCCGCGTGATAAAAAAACAGAGTTGA
AAACTTCTGTGGCGAATGATGATTCTCATAAGAAGTTCGTCTTCAAATTG
AAGAAAACTTCTAAACCCACCTCACCACAGCCTGTACATTGCACAAATAC
TGCCATAGATGCTGCTGCAAGTGAAAAGTCAGAACTCAATATAGAATGTT
CTCCTCGCTCTGTATCTCCGTGTCCTGGGAGTCCATCTAAATCGCCTAGT
CCGTGCTCTGTGCGATCGACAAGCTCCACCCGAAGTGGTGGCACCCTATC
ACCGACATTAGAAAAACGCGACGGTTGGACACCACGACATCGACTTCCAA
TGACTAAAGTGAAGCTTCCAAAATTTACGTATtctaaaaaggaaaagaaa
ctgGTCGTCAAAGATTTGGATAAGATTCGACAACGCGTCAAAAAGACACG
TGAAGCTTATCACGATGACCTcattaaagaaaaagaagacactgCAAAAG
AATATTGGAAAAGTTTAAAAACGGGACAGATTTCTTCGGAACGTTTACAC
ACGAATTTCAAACGCGTTTTTCGTTGTTATTCGCCTTCAAATGATGGCGA
ATTCGGTAATTTTGCATCGAAACATCAACGAAGTCCCGAACGTGCTTTGG
ATCTGCACCGTAGTAACGGAGGATTTGTACATTGAAAACAACAGTAACCA
ACATTttagtaaaatatctttcagcaaaatgactcaaaagATTACCTAAA
TTCTAACTATTTTCCTTGTAACAAATCAACTTCCAATCTACATCGATCGC
TATGCTTTTTTCAGGGTCTGCAGACATACAAATTGAATAATTCGGGGATC
ATTGGGCTATTTCCAGAAAATAGTTCGTTCATTGAGAGTGGAAGTtatgt
tatttttcaaatatctaCCCCTGGAAGTTTCGACACGTGTTTTTCCCTGT
TAGCCCTAATTGAGTCGTCAACTTTAAAAGGTTGTTGAGCCAAAATTGAC
CATCAGTTTACggactaccttattacacaaatattactaggcaagtgttc
aacggccttgaaattaacacgcacaaaattaacacgaattttatttgctt
tttcaaggacaccatggctggttttaattaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015443-exon-sc0000211-1491911889:316647..317047 | TCONS_00015443-exon-sc0000211-1491911889:316647..317047 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1510915933:316647..317047 | TCONS_00015443-exon-sc0000211-1510915933:316647..317047 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1575043694:316647..317047 | TCONS_00015443-exon-sc0000211-1575043694:316647..317047 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1491911889:317396..317698 | TCONS_00015443-exon-sc0000211-1491911889:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1510915933:317396..317698 | TCONS_00015443-exon-sc0000211-1510915933:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1575043694:317396..317698 | TCONS_00015443-exon-sc0000211-1575043694:317396..317698 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1491911889:318940..320378 | TCONS_00015443-exon-sc0000211-1491911889:318940..320378 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1510915933:318940..320378 | TCONS_00015443-exon-sc0000211-1510915933:318940..320378 | Clytia hemisphaerica | exon |
| TCONS_00015443-exon-sc0000211-1575043694:318940..320378 | TCONS_00015443-exon-sc0000211-1575043694:318940..320378 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:316647..320378 + |
Blast
The following BLAST results are available for this feature:
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