TCONS_00015438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015438
Unique NameTCONS_00015438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015438 ID=TCONS_00015438|Name=TCONS_00015438|organism=Clytia hemisphaerica|type=transcript|length=1617bp
TCAATGTTACCTGGACCCATTAGGACCCTCTACTCCAGACCCTCTGAAAT
CAAAAAGCCCCTTAAAACGCTATTTTTACTTGTCTTCATTCCGTAAACTA
GAGAAGAGATGTTGAGGAACAAAAAAGTTGTATAGAAAACTACCAACCCT
CTAGGCTGCTCTAAGTGGTGCTACCCGTACTCAGGATCTGGtatatttga
acattttttgttAGTAGAATATTGGTTTTAATCTGACACAGAGATGATGT
ACCCTAAGTAACAATGAGTGACACTAAATCAAAAAAGTACATTCAAGTTG
AAGATGTATTTCCAGAGGAAACAGCTCTCCTAGTGCGGGAGATTGGACAA
AATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCAACCA
GCTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCGCAGC
CACACCTCATCAATATACAATTTCCAAAGAGAACAATTATCAGTTACATA
AGTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACAAAAT
CTCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTCGAGTTAT
TGGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAAAGac
aatcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTAACCA
CCAAAATGGGCGTGATACACACTTACggcaaatcaaaatatttggtCCAA
AACACAATACTGTTGACGTGAAGGTCCCTTCCATAGAACAATTTGTTTCT
GTTGACATGGCACAGTTCTCATGTATTAGGTGACGTATATGTTTACCGAA
ATCAATTATTGTACTGAGTGTTGTTTTTATCATTAGATTAACATCNCAAA
ATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCAACCAG
CTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCGCAGCC
ACACCTCATCAATATACAATTCCCGAAGAGAACAATTATCAGTTACATAA
GTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACAAAATC
TCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTTGAGTTATT
GGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAAAGaca
atcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTAATCAC
CAAAATGGACGCGATACACACTTACggcaaatcaaaatatttggtCCAAA
ACACAATACTGTTGACGTGAAGGTTCCTTCCATAGAACAATTTGTTTCTG
TTGACATGGCACAGTTCTCATGTATTAGGTGACGTAAATGTTTACCGAAA
TCAATTATTGTACTGAATGTTGTTTTTATCATTAGATTAACATCGtcttc
tttttttgtaaaatattgtaaaGTAACAACCTCCGTATTATTCTTTCTCG
ACCTTTTCACTTCAATCAGttctcttgggtacctaatttATTGAGTGTGC
TTACTCTTAGATAGGTGCCTAATTTATTGGGTGCATTTACCAAGTTAAAA
TTCCAATCATAATTGAG
Run BLAST on NCBI

transcript from alignment at sc0000211:304320..305936+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015438 ID=TCONS_00015438|Name=TCONS_00015438|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0000211:304320..305936+ (Clytia hemisphaerica)
TCAATGTTACCTGGACCCATTAGGACCCTCTACTCCAGACCCTCTGAAAT
CAAAAAGCCCCTTAAAACGCTATTTTTACTTGTCTTCATTCCGTAAACTA
GAGAAGAGATGTTGAGGAACAAAAAAGTTGTATAGAAAACTACCAACCCT
CTAGGCTGCTCTAAGTGGTGCTACCCGTACTCAGGATCTGGtatatttga
acattttttgttAGTAGAATATTGGTTTTAATCTGACACAGAGATGATGT
ACCCTAAGTAACAATGAGTGACACTAAATCAAAAAAGTACATTCAAGTTG
AAGATGTATTTCCAGAGGAAACAGCTCTCCTAGTGCGGGAGATTGGACAA
AATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCAACCA
GCTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCGCAGC
CACACCTCATCAATATACAATTTCCAAAGAGAACAATTATCAGTTACATA
AGTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACAAAAT
CTCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTCGAGTTAT
TGGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAAAGac
aatcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTAACCA
CCAAAATGGGCGTGATACACACTTACggcaaatcaaaatatttggtCCAA
AACACAATACTGTTGACGTGAAGGTCCCTTCCATAGAACAATTTGTTTCT
GTTGACATGGCACAGTTCTCATGTATTAGGTGACGTATATGTTTACCGAA
ATCAATTATTGTACTGAGTGTTGTTTTTATCATTAGATTAACATCNCAAA
ATGCAGTTTGGTCCTTGTCATCTTGCAAAGTTGGATCAGGCGTCAACCAG
CTTCGTGATAATGACTTGACGACATACTGGCAATCAGATGGGCCGCAGCC
ACACCTCATCAATATACAATTCCCGAAGAGAACAATTATCAGTTACATAA
GTATTTATACTGAGTATAAACAGGATGAAAGTTACACACCAAACAAAATC
TCCATCCGGGTTGGCAACGATCCCCATGATCTTCAACAGTTTGAGTTATT
GGAACTGGATGAGCCAAGTGGCTGGATCAATACAGAACTGTGTAAAGaca
atcaaaatatcaaaactttcATGATACAAATTGCTGTGTTAGGTAATCAC
CAAAATGGACGCGATACACACTTACggcaaatcaaaatatttggtCCAAA
ACACAATACTGTTGACGTGAAGGTTCCTTCCATAGAACAATTTGTTTCTG
TTGACATGGCACAGTTCTCATGTATTAGGTGACGTAAATGTTTACCGAAA
TCAATTATTGTACTGAATGTTGTTTTTATCATTAGATTAACATCGtcttc
tttttttgtaaaatattgtaaaGTAACAACCTCCGTATTATTCTTTCTCG
ACCTTTTCACTTCAATCAGttctcttgggtacctaatttATTGAGTGTGC
TTACTCTTAGATAGGTGCCTAATTTATTGGGTGCATTTACCAAGTTAAAA
TTCCAATCATAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008620XLOC_008620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015438-exon-sc0000211-1491911889:304320..305936TCONS_00015438-exon-sc0000211-1491911889:304320..305936Clytia hemisphaericaexon
TCONS_00015438-exon-sc0000211-1510915933:304320..305936TCONS_00015438-exon-sc0000211-1510915933:304320..305936Clytia hemisphaericaexon
TCONS_00015438-exon-sc0000211-1575043694:304320..305936TCONS_00015438-exon-sc0000211-1575043694:304320..305936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:304320..305936 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.524934	1.32325	0.847569	0.775263	3.48726	4.78016	2.09711	3.14497	0.707646	0.0446042	1.98886	1.08861	1.52873	1.51722	0.5481	0.73553	2.07026	0.838489	1.00347	0	1.2798	0	0.636704	0	4.59718	5.05426	0	0	0	0
Blast
[Close]
BLAST of TCONS_00015438 vs. Swiss-Prot (Human)
Match: APC10 (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.589e-51
Identity = 97/167 (58.08%), Postives = 123/167 (73.65%), Query Frame = 3 
Query:  333 VREIGQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 830
            VREIG  AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T +  + IY +YK DESYTP+KIS+RVGN+ H+LQ+   LEL EPSGWI+  L  +++   +TFMIQIAVL NHQNGRDTH+RQIKI+ P   +   K P   +  ++D   +  IR
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185

HSP 2 Score: 166.777 bits (421), Expect = 7.530e-48
Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 3 
Query:  882 IRLTSQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 1379
            +R     AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T +  + IY +YK DESYTP+KIS+RVGN+ H+LQ+   LEL EPSGWI+  L  +++   +TFMIQIAVL NHQNGRDTH+RQIKI+ P   +   K P   +  ++D   +  IR
Sbjct:   22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185
The following BLAST results are available for this feature:
BLAST of TCONS_00015438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APC107.589e-5158.08Anaphase-promoting complex subunit 10 OS=Homo sapi... [more]
back to top