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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015436 ID=TCONS_00015436|Name=TCONS_00015436|organism=Clytia hemisphaerica|type=transcript|length=1443bp
CTTTTGCAGAAGTTCTATTCTAGGCAGCCAGGCAATCTTGAAGAATATTG
GTTTTAATCTGACACAGAGATGATGTACCCTAAGTAACAATGAGTGACAC
TAAATCAAAAAAGTACATTCAAGTTGAAGATGTATTTCCAGAGGAAACAG
CTCTCCTAGTGCGGGAGATTGGACAAAATGCAGTTTGGTCCTTGTCATCT
TGCAAAGTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGAC
ATACTGGCAATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTTC
CAAAGAGAACAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAG
GATGAAAGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCC
CCATGATCTTCAACAGTTCGAGTTATTGGAACTGGATGAGCCAAGTGGCT
GGATCAATACAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATG
ATACAAATTGCTGTGTTAGGTAACCACCAAAATGGGCGTGATACACACTT
ACggcaaatcaaaatatttggtCCAAAACACAATACTGTTGACGTGAAGG
TCCCTTCCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGT
ATTAGGTGACGTATATGTTTACCGAAATCAATTATTGTACTGAGTGTTGT
TTTTATCATTAGATTAACATCNCAAAATGCAGTTTGGTCCTTGTCATCTT
GCAAAGTTGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGACA
TACTGGCAATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTCCC
GAAGAGAACAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAGG
ATGAAAGTTACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCCC
CATGATCTTCAACAGTTTGAGTTATTGGAACTGGATGAGCCAAGTGGCTG
GATCAATACAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATGA
TACAAATTGCTGTGTTAGGTAATCACCAAAATGGACGCGATACACACTTA
CggcaaatcaaaatatttggtCCAAAACACAATACTGTTGACGTGAAGGT
TCCTTCCATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGTA
TTAGGTGACGTAAATGTTTACCGAAATCAATTATTGTACTGAATGTTGTT
TTTATCATTAGATTAACATCGtcttctttttttgtaaaatattgtaaaGT
AACAACCTCCGTATTATTCTTTCTCGACCTTTTCACTTCAATCAGttctc
ttgggtacctaatttATTGAGTGTGCTTACTCTTAGATAGGTGCCTAATT
TATTGGGTGCATTTACCAAGTTAAAATTCCAATCATAATTGAG Run BLAST on NCBI transcript from alignment at sc0000211:297302..305936+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015436 ID=TCONS_00015436|Name=TCONS_00015436|organism=Clytia hemisphaerica|type=transcript|length=8635bp|location=Sequence derived from alignment at sc0000211:297302..305936+ (Clytia hemisphaerica)
CTTTTGCAGAAGTTCTATTCTAGGCAGCCAGGCAATCTTGAAGGTATAAT
CATTATAAtatgatattttgatatttcagtGCTCGAAATAACGTTGACAC
ATTTTAATGCGTAGTTATTATCAATCTGGATAAAGTGTGCATTTagttag
tttttcattttttacagtacccagacgatctcaatcgaacggaatcgacg
atcgaaccagtcgaaccaaatcgaacgcaatcgaccgattgaaattcgat
tgtcgaacgcaatcgaatctcagacgaatattaccgcaattttcagattc
gattgatattcgattgcgttcgattgatgttcgattgagttcaattgcgt
tcgatcgtcgattcattgacccccggactgttcatcgcataatttctacg
ggaaatcgaaagtaatttcatttggcttgtgatgtttgagagcttggatg
ttgggaagctgcaagaataaagctagacgatctcaatcgaacggaatcga
cgatcgacgaaccagtcgaacaacaatcgaaccaatcgaatattatcCAA
Aaatttgacgttcgattgagattcgattgcgttcgacaatcgaatttcaa
tcggtcgattgcgttcgatttggttcgattggttcgatcgtcgattccgt
tcgattgagatcgtctggcagTACATAGTTTTATATTGACATTTTGTCTG
TTTGATTGAGAACCCTGTTCCACACTTTGTACACTTTGTGTCAAAATTTA
GATTGTAAAGAATTCTTTAGATATATTTTTTAGGAtcttttattgacaaa
attgtACTTATTCGtccttttgaacaaaaatattatctttgatatgtttt
ttttcaaacaacctTTCCTTTTTGTACAGACCCGGGCCTTTTCTATGCTG
GATGGCActaggccaggcccaattgattgtttggtttgtgtcctagaagc
tttgaaaaatgggtcAGTCGGTCGgaaccttttttttattttcaaacaaa
tCGTGCAATCCTctcagttgggtgtttaagataaaaactgcaattattgc
tctttttggcAAAGAAATGCCGCGTCAGCAAAATATATTGTCCttataag
ggcaaagatgtcaaaggtgtttgaaaattgtgaaattgcATTGAGGAAaa
ggtttttcagatttttaaaagtgattttttcaattttttgttgctCAATA
TAATAGACAGGCAGCTGTTGtgatgacatcaaaaaaagtgaataagtGAA
AATTTGAGAGACAAATGTTGAgtacttattttgaaatctttatagtttag
tttagagagtcagaaaaatttacttGGAGTGTTTAATAAAAATCTTTACT
GGACGTGTCTGAGAATAATTTattgattgatgacgtcacaagcagttaca
tcaatatcaatatgccaaaaacattttgttcaaccaccttcacttcaaga
aaggccaccatagaatgaacttccttttataggatgaaccatattcatgt
ggctttcagccttgcactctatcacagagcctatttgagatattttacta
actagcccagagaaaattttttaacctttattatttgaatgcatgccttt
gtaatactcaaatataaaaaaattaaaaatttttaacttggtcattagtc
aaaaaagtcattaaaattgattagcctctgcgatggagtgcaaggctgaa
agccacatgaacatggttcatcctataaaaggaagttcattctatggtgg
cctatcttgaagtgaaggttgttgaacaaaatgtttttggcattttgatg
TATATAACTGacaagcaaaagtgaaaaattgatgttgcaaaatttcaaag
ttttatataccatttgaagcgttttttgatgtagatttcaaatcacatca
atctcaataagtaaaaatttgaatatgaaaagttattgaggtccgTAGCT
CTTCTATGAcgacgtcatttttgaaaaaatgtctcATTTACAatctcaat
tttctcgagttaggctGAGAAATCGAATACTGTATACCCGTTTAattgtc
ttctatatagtttttaatgattttttgaaatttcgacatggaaaaaaagt
cagttttttggaaataactttcgaactactttttcaaatttaatgtatga
tagctcaaaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatc
ctctatacaataaaaaaagaatgaacaaaaaatttaaattctgaagctca
caatatctcgacaaagttgtatacttttttttggtgcacccggtatatat
cattattatatgctgaaatctaattttcacttttggtggggacgtcatca
tttgacaaattacTACCGGACATGTCCGTTGAATAAATTTTCTCACCAAT
CGGCATCTGGTCATTTTGTAGTCATATAAAAACCTTTATTACATGATTGA
actataaaaacaaacaaaagaaagcCTGAGAGGATGTTGAGAATTTAAGG
TATGTGTAAAGTTAGGTAATCTGACGAAAATTGTGGTTTTCAAACTGAAA
ATCTTAGATTGAGATTAGTAACAAAATTGAGATTGAACCTTATAATAATA
ACttatgaaattttaaatatcttgaaatacaaacaataaaatgttaaatt
aagattataaataataaataaatataatgaATAAATGTAGTAAAAACCTT
TTACAGCACAATATTGAATAGAGACATTACTAGAAAATagttaatttttc
ctaaaatgTTCAATATATAAGTTTAGTTCTGAAGAGATCCTCTTTTGCAA
TCTTTCTCAAATCAGTTGGTCAATTATTCCACCATTTTGTGGCTGTTGGG
ACAAACGAGTTTGTATATGCAAGAattctgtcaatttttttgctggagTT
TAGTACCGTCTCTAGAATGATTTGGTAGCATACTGAGAGGAATAGCAATT
TTCTTGTGTAGAATTTTATGTAGCATGACAAGGCTTGAGATTTTATGCTA
CAGTGCAATTGAAATCCATTCAAGGTTTTCAATCATTGTTGAAGGACTTG
AATTCCAAGACCAGTTGTTGTTGATGAAACAGGCTGCTTTACGCTGTACC
ATTTCCAGATCAGAGCATAGACCTGCATGGAGGCATACATAACAATTAGT
AGAACATAAACTTTGAATGCCTTGATTTGTATGTTCTTTCAACATCCCCT
CAGCATTCTTTTACGATGTGTTTACCCCATTCTGAGTCTTTAATGGATTG
TAACGCCTCGGTATTTTGCTGTTTAACACTTTCGAGTGTCTCTATGTGGA
TTGTGTATGAGGTGACAACTggtttgattttgtttgttattgcgagctgt
ttacatttttgaggGTGAAATTCCATGTCCCAGTTGTGCTCCCAAATTTG
CAGTTGATTCAAGTCTTCTTGTAAGATCTGCATATCTAAAATTGATTTCA
TAATTCTGTCAGGGGGGGTTGGTACTAAGCTGTGGGGGCCAGTGCCGTGT
GGTGGTCTgataaggtaagtaaaaaacaacttagtacATGGTACTAAGTT
GTTGTtctaattgaaaaaaacatttttgcaactttgTATCAAGGGTCTAA
ATGGTGGTCTCAATACCCAATATGAGGCATCAAGTTAATATCTGTTACTC
AAAATCctgcaaaatcacaaaaaatgttctttcacTTTCTTCTCTTTCTC
TTGTTTTAAGTTCTGATACCAGATTCTTCATGTAGGTAATGTCTTTATCA
GGTGCCAGGTGCCAGGTGGACGATATATGCTACAAACAATTACCAGCTTC
TTAAAGGTTTCTATTTTAATAGCAATACATTCTGTTTGGGAAGGATTAAA
AACAGTATCTGTGATGAGAGATTTCTTTGCAAAAATAGCTACACCTCCCC
AGCCATCTTTGCAATCATTACAATATGAAGCATATCCTGGTAGTTCAAGT
TCAAGATTTTTAATCGAAGGATCTAGGAAGGTTTCTGAAGCAATAACAAT
GTCTGAGTCTTCGTCTAAAAGCGTGTTACTGAAGAGTTCTTTTTTACCCC
ATAAGCCTTGGAGATTCACCACCATCAGAGGCAGCATTCTTGCTTTAGTC
TTAGGAGTATCAGTGTCTGATTTTCCACTAGAAGCAGAAGATAGTATACT
GTCTGTTAACGGATTGTTGGAACGTATGGTTGCACAATTAAAGCCATTGC
CATTCAAAATCACAGTCTTCTGCGTGTAGTGTAAATATGTTATCTGACAT
GTAGACACATTTCTTATGGAATCACTTGTCACATGTATCACAGGCAATAG
CATCCTGAGTCACTGCTTTCCCACATTCTCGGCATGGGTATTTAATTTTT
CGCATCACGTTaagaagaaaattgataaatGGATAACAATGGAAGAAAAA
TGTATAAAGACTGATACCTGCTCAGCTGCACATGGGAACCCAGGTTCTGA
CATTCTCATATAATGCTTTCAATTTAGGATAATCCGGGAATGATCATTTC
TTTTCTCCCGTGAATACCCCTTTTGCAGGTACTGCGTATGACATTTTGAC
TGGCAAAGGTATCAATATCAGTAACACCAACGTTGTGCTTAATGAGGGTA
TTATCCCCAACGCCCAATTTTTCGATCTGACAATCGATCTGCAAGCCCAC
CACCTAATTGTTTATAGCAGTGGGCTTGTCAAGAAGGAACCGCTCCTTCA
CTCGTTCAACGAAGAAGTGATCCACCTTCTTCTCCTTCTTGCTCTTTATG
TAAATGCATTGACCCATGAGCCAATGATGCTTTCCCTGGTGTTTGACGGT
TGCTGACAACAAACAGAGGCTGCTTAAAAAGCTGCTTTATAAATGAAAGG
AGAAAATTTCCGTGGCTGATCCATGGCCTATAGAAAAAAGAGGCAGGACC
AGTTAAAAGTGAAATCTTGGCTGTTAAAAAGCCGGTATTTTACCGCTTTT
TAGACAATTGGTCTTGATTGGCCTTTTCAAGTGCTAAAAATTGCTTGGTG
AGTCACCTTTCAACATATAATATTTACACAAATCAACTCTGATGTGCTAT
TTGAAAGAATATATGTATTTACATTATATATTTGCTTCCCCCTCCCTCAT
ATAAGTATAAAGAATATCTTCTCTTCTCCCATTTTGTATAGTTTGTATTG
TTCAGAGGTGATTTCCCAAATTATTTCTATTCATTcagaaaatattcttt
tgtatttagaGAAAATTCAGTTCCTGatcctgtatttttgaaggataggg
tagttaaatactaaaatgggtgctatctatgtgttaaatgttgaaaaaat
gttactacctgggtagttaaaactggtaaacttagcaaattttagctatt
tttgtaattcttttaattttttggatgacttttctgaaaaaatctgaaaa
tttttaaaatttgaaaaagttttctgttggaaagttgtttgctgcaaaca
aaaaattctcgaaattttttgtcaatataaaaaagacttgaattataagg
gcaaaacattaatttttgcacttagtgaaaaatgtgtcacaaaaataatc
attttttagcttttttcgtaaaatcagtccgaaaagcaaccaaaaaatag
gcagtctccatgacaaattgtcccaaaaactcttactaccagggtagtaa
aacaCCTCTTCCAAGAATCcaggtggtggtatgtaaaaattggtaaaaat
ccttttactactcatatatgtctgagattttactaccaaCCTCCCCCCCT
GGTAGAAACTGTCTTAGAAagaaaaaaggttaaatttaatTAGTTagtag
gaaaattttttttttggaattcttACAAGCACCTTTTCATTGTCTCGTTA
GCTTAAACAAAGTGCTCAAAAAAGCGCCGATGACACCTTTCTATGTGCAC
ATTTTTATAATATGTCATCTTTTTTATGTCAATCTATATAAGAATGTCTC
AATTCAAATAGGAATTTGTGAATGTCTGATACTTGATATTGAAAATATGT
ACTCATACTTTGATTAAGTACATATCCCTGTCTCTTGTAAGAACCAAAAT
CATTCTTGACAATGGTAGGAAAGCTCTatattcaaaagttatagctatat
ttaaaataatattttttgcctCAAAGGAACATTTTGTCAATAGAATAATA
ATTCTACAGAATTGTTTGCAAGATAAATTCTGAAACATGCACCAACGTGG
TCTTAAACTGAATACACTCaattaagtttttttaacttttaatttgatgt
tcttataaaatcaaaatttacataAGTCTTTAAGATGAGTATTGAGTGTT
TATGCATTTACAGTAAAAGTAAGTAGTACCGGGTGTGACACTattaagtt
accctctttgatttaatattgtaggcagtagagaagagatttttcaaaga
ttatcTCAGAATCATTCAGGGGAAAGCCTAAcataaaatttggtgtatta
ctttttaattttacttcattggttcaaaagttatgttcaaaaacctaaaa
tgccaattttaaaaattgtcaaaaaacaaaacaatctctgaaaaatcttt
cTGCCACTGCCTGCAATATCAttatcaaagagggtaacttatttgtggca
cacccggtatattAAGTATTAAGTATGTTTTGAACTTACCCATTTTTTAA
CACGAAAAAGTTTTAGATTTTGTCAGTTTAGACATGCTGGatattttaaa
gttaatttcaAGACATTGTGCAGCACTGTGAGGTATTTTATAGCATAGCA
ACCAGTAGGCAGTAGGCATTTTTGACCTGCCCTGTATGTGAATATTTTGA
ATTGTGTGATTTATTAGAGAGTATGAAACAGGCACAAATATGcaaaaaac
atcgatttttatttatttttattttttaatctctggaaatatttttgaac
ttctttttctaaaattgttGTCCTACCTTTTGAGCTGCTGAGTTTCAAGT
CTTTTTCTTGGCTATATCAAAAGATATGATCTGACCTTACTGACATGAAA
ACAGCTTTTCCAGTACAATCAATGTTACCTGGACCCATTAGGACCCTCTA
CTCCAGACCCTCTGAAATCAAAAAGCCCCTTAAAACGCTATTTTTACTTG
TCTTCATTCCGTAAACTAGAGAAGAGATGTTGAGGAACAAAAAAGTTGTA
TAGAAAACTACCAACCCTCTAGGCTGCTCTAAGTGGTGCTACCCGTACTC
AGGATCTGGtatatttgaacattttttgttAGTAGAATATTGGTTTTAAT
CTGACACAGAGATGATGTACCCTAAGTAACAATGAGTGACACTAAATCAA
AAAAGTACATTCAAGTTGAAGATGTATTTCCAGAGGAAACAGCTCTCCTA
GTGCGGGAGATTGGACAAAATGCAGTTTGGTCCTTGTCATCTTGCAAAGT
TGGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGACATACTGGC
AATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTTCCAAAGAGA
ACAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAGGATGAAAG
TTACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCCCCATGATC
TTCAACAGTTCGAGTTATTGGAACTGGATGAGCCAAGTGGCTGGATCAAT
ACAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATGATACAAAT
TGCTGTGTTAGGTAACCACCAAAATGGGCGTGATACACACTTACggcaaa
tcaaaatatttggtCCAAAACACAATACTGTTGACGTGAAGGTCCCTTCC
ATAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGTATTAGGTG
ACGTATATGTTTACCGAAATCAATTATTGTACTGAGTGTTGTTTTTATCA
TTAGATTAACATCNCAAAATGCAGTTTGGTCCTTGTCATCTTGCAAAGTT
GGATCAGGCGTCAACCAGCTTCGTGATAATGACTTGACGACATACTGGCA
ATCAGATGGGCCGCAGCCACACCTCATCAATATACAATTCCCGAAGAGAA
CAATTATCAGTTACATAAGTATTTATACTGAGTATAAACAGGATGAAAGT
TACACACCAAACAAAATCTCCATCCGGGTTGGCAACGATCCCCATGATCT
TCAACAGTTTGAGTTATTGGAACTGGATGAGCCAAGTGGCTGGATCAATA
CAGAACTGTGTAAAGacaatcaaaatatcaaaactttcATGATACAAATT
GCTGTGTTAGGTAATCACCAAAATGGACGCGATACACACTTACggcaaat
caaaatatttggtCCAAAACACAATACTGTTGACGTGAAGGTTCCTTCCA
TAGAACAATTTGTTTCTGTTGACATGGCACAGTTCTCATGTATTAGGTGA
CGTAAATGTTTACCGAAATCAATTATTGTACTGAATGTTGTTTTTATCAT
TAGATTAACATCGtcttctttttttgtaaaatattgtaaaGTAACAACCT
CCGTATTATTCTTTCTCGACCTTTTCACTTCAATCAGttctcttgggtac
ctaatttATTGAGTGTGCTTACTCTTAGATAGGTGCCTAATTTATTGGGT
GCATTTACCAAGTTAAAATTCCAATCATAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015436-exon-sc0000211-1491911889:297302..297344 | TCONS_00015436-exon-sc0000211-1491911889:297302..297344 | Clytia hemisphaerica | exon |
| TCONS_00015436-exon-sc0000211-1510915933:297302..297344 | TCONS_00015436-exon-sc0000211-1510915933:297302..297344 | Clytia hemisphaerica | exon |
| TCONS_00015436-exon-sc0000211-1575043694:297302..297344 | TCONS_00015436-exon-sc0000211-1575043694:297302..297344 | Clytia hemisphaerica | exon |
| TCONS_00015436-exon-sc0000211-1491911889:304537..305936 | TCONS_00015436-exon-sc0000211-1491911889:304537..305936 | Clytia hemisphaerica | exon |
| TCONS_00015436-exon-sc0000211-1510915933:304537..305936 | TCONS_00015436-exon-sc0000211-1510915933:304537..305936 | Clytia hemisphaerica | exon |
| TCONS_00015436-exon-sc0000211-1575043694:304537..305936 | TCONS_00015436-exon-sc0000211-1575043694:304537..305936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:297302..305936 + |
Blast
BLAST of TCONS_00015436 vs. Swiss-Prot (Human)
Match: APC10 (Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.980e-51 Identity = 97/167 (58.08%), Postives = 123/167 (73.65%), Query Frame = 3
Query: 159 VREIGQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 656
VREIG AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T + + IY +YK DESYTP+KIS+RVGN+ H+LQ+ LEL EPSGWI+ L +++ +TFMIQIAVL NHQNGRDTH+RQIKI+ P + K P + ++D + IR
Sbjct: 22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185 HSP 2 Score: 166.777 bits (421), Expect = 3.310e-48 Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 3
Query: 708 IRLTSQNAVWSLSSCKVGSGVNQLRDNDLTTYWQSDGPQPHLINIQFPKRXXXXXXXXXXEYKQDESYTPNKISIRVGNDPHXXXXXXXXXXXXPSGWINTELCKDNQN-IKTFMIQIAVLGNHQNGRDTHLRQIKIFGPKHNTVDVKVPSIEQFVSVDMAQFSCIR 1205
+R AVWSLSSCK G GV+QLRD++L TYWQSDG QPHL+NIQF ++T + + IY +YK DESYTP+KIS+RVGN+ H+LQ+ LEL EPSGWI+ L +++ +TFMIQIAVL NHQNGRDTH+RQIKI+ P + K P + ++D + IR
Sbjct: 22 VREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFP---RCTTIDFMMYRSIR 185
The following BLAST results are available for this feature:
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