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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015420 ID=TCONS_00015420|Name=TCONS_00015420|organism=Clytia hemisphaerica|type=transcript|length=1494bp
ACGTCAGGATTATATCTCATTTGCATCAAGTGCTCTTTGGGAAATTGCAT
TAAATATCTCATTCTTACAAAAAGTCACAGCTGTTGAAGTCAACAAGTAa
cataagaaaacaaaaatgttttggaaaaagaaaaaggtggTTATAGAGCA
GACGACTTATGAAGCTGGTCGCCACCATGCTGCAGAAGACAAACTTTCCA
AACTTGTAGAAGAATAtgagaaattcaaaaacatGTGGAAGGAAACGAAA
ATGGAAAACGAGCGACTTCGGTACTTATGTCGATGTCAAAAACAAGAGAT
CATCAAGAAAAATCGCTTGTTGGTGGAGAAAAACTCGCTGTTGTCACAAA
TCGAAGAATCGACGCATGCGTTGAAAGACGCATTCAGAACGACGGACGAC
AATTTCCAAAGTTCGCAAGAAGAATTACGCGAAAAAGAGAAGTCAATCAA
TAGTctgaagaaaatcaaaacaaatctggTCGTCACGAAGGAACGCACAG
AAAACGAACTATGGAGACTGAGGCGCGAATTGTCACAAATTGGTGAGCTG
ATCATACAACATAACGAAGATATGTCGCTTCTTAAAGACCGTTTGACGGA
CACAAAGGAACGAAATAACGACTTGTGTGATGAACTGGATGAAGTTGAAT
CAACCAACCAACAATTGGTAGACGAACTGGATTCAGTGGTTGCTGAGTTA
GAAACGATCAAAACGGACCATGAGGACACACAACAAGAATTGAAAGCATG
TCGTGAATGGAATGAAAAACTTTGTGAACAATTCTTACAATCAGAAATGA
GGAATCAAGAACTGGTGAATCAGTTGAATGGGACAGTTGAGGAGCATACT
CATTATTTGGAAGTGGAAGGAAAGTTGGTCAACAAACAAAAAGAAGTTGT
CATTAAAGGTGAACAATTGAAAGATATTAAGTCACGTGATGAGAGAGTGG
CTTTACTTTTATTAAAGCTTGCAAGCTCCATTAAAAGTCAAGTCAAGAAA
CCAAGTAAACCAAAGAATTGCATCATGTACCCATTCCAACAGATTGTTCC
CAAGAAGAAAAAACCAAACACCAAGAATGGAGTGAAAAATTACTTGTTCG
ATGAACGTTTTGGTATGGTGCAAGAACTGTTAGGAGAATTCGTTCATGCT
TGTTGAGAAGGAGAAGGCGGTGTTTTACTGGAAAGTAAAGATGGAGGAGG
ATTTTCTGAGGACTTGGGAAAAGACCGATTTAAATTGACCATTTCCACTT
TTCACATATAAACAATGGAGGAGGGGAtggtaaaaaactgaaaactttta
taaaaactgGATAGTCTTCGGAAAGCAAATCACCCTCAAACCAAAGAAAG
AAGGACAGTCAGTTTTATTTTATGTAAATGTAGAATTTAAATGTAGACTC
AAGGatataaatataaatcaaaTATTGTAAATTTAGATGTAGTAACTTAT
CAAACAATTTATGAAAGATATCGTTTTAAGATGTCATTACAGTT Run BLAST on NCBI protein sequence of TCONS_00015420-protein >TCONS_00015420-protein ID=TCONS_00015420-protein|Name=TCONS_00015420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MFWKKKKVVIEQTTYEAGRHHAAEDKLSKLVEEYEKFKNMWKETKMENER
LRYLCRCQKQEIIKKNRLLVEKNSLLSQIEESTHALKDAFRTTDDNFQSS
QEELREKEKSINSLKKIKTNLVVTKERTENELWRLRRELSQIGELIIQHN
EDMSLLKDRLTDTKERNNDLCDELDEVESTNQQLVDELDSVVAELETIKT
DHEDTQQELKACREWNEKLCEQFLQSEMRNQELVNQLNGTVEEHTHYLEV
EGKLVNKQKEVVIKGEQLKDIKSRDERVALLLLKLASSIKSQVKKPSKPK
NCIMYPFQQIVPKKKKPNTKNGVKNYLFDERFGMVQELLGEFVHAC Run BLAST on NCBI transcript from alignment at sc0000211:132818..134462+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015420 ID=TCONS_00015420|Name=TCONS_00015420|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at sc0000211:132818..134462+ (Clytia hemisphaerica)
ACGTCAGGATTATATCTCATTTGCATCAAGTGCTCTTTGGGAAATTGCAT
TAAATATCTCATTCTTACAAAAAGTCACAGCTGTTGAAGTCAACAAGTAa
cataagaaaacaaaaatgttttggaaaaagaaaaaggtggTTATAGAGCA
GACGACTTATGAAGCTGGTCGCCACCATGCTGCAGAAGACAAACTTTCCA
AACTTGTAGAAGAATAtgagaaattcaaaaacatGTGGAAGGAAACGAAA
ATGGTAAGTGAATGAATATCAACAGTAActctttgttaaaaatttttttt
aaatattaattTTCGAGACTCCACAAATAGCCAATAAAGCTTCGAGTACT
ACCCCGattaaactttttcaacatAATGTTCACGAACTTGTTATTTTCTC
ACAGGAAAACGAGCGACTTCGGTACTTATGTCGATGTCAAAAACAAGAGA
TCATCAAGAAAAATCGCTTGTTGGTGGAGAAAAACTCGCTGTTGTCACAA
ATCGAAGAATCGACGCATGCGTTGAAAGACGCATTCAGAACGACGGACGA
CAATTTCCAAAGTTCGCAAGAAGAATTACGCGAAAAAGAGAAGTCAATCA
ATAGTctgaagaaaatcaaaacaaatctggTCGTCACGAAGGAACGCACA
GAAAACGAACTATGGAGACTGAGGCGCGAATTGTCACAAATTGGTGAGCT
GATCATACAACATAACGAAGATATGTCGCTTCTTAAAGACCGTTTGACGG
ACACAAAGGAACGAAATAACGACTTGTGTGATGAACTGGATGAAGTTGAA
TCAACCAACCAACAATTGGTAGACGAACTGGATTCAGTGGTTGCTGAGTT
AGAAACGATCAAAACGGACCATGAGGACACACAACAAGAATTGAAAGCAT
GTCGTGAATGGAATGAAAAACTTTGTGAACAATTCTTACAATCAGAAATG
AGGAATCAAGAACTGGTGAATCAGTTGAATGGGACAGTTGAGGAGCATAC
TCATTATTTGGAAGTGGAAGGAAAGTTGGTCAACAAACAAAAAGAAGTTG
TCATTAAAGGTGAACAATTGAAAGATATTAAGTCACGTGATGAGAGAGTG
GCTTTACTTTTATTAAAGCTTGCAAGCTCCATTAAAAGTCAAGTCAAGAA
ACCAAGTAAACCAAAGAATTGCATCATGTACCCATTCCAACAGATTGTTC
CCAAGAAGAAAAAACCAAACACCAAGAATGGAGTGAAAAATTACTTGTTC
GATGAACGTTTTGGTATGGTGCAAGAACTGTTAGGAGAATTCGTTCATGC
TTGTTGAGAAGGAGAAGGCGGTGTTTTACTGGAAAGTAAAGATGGAGGAG
GATTTTCTGAGGACTTGGGAAAAGACCGATTTAAATTGACCATTTCCACT
TTTCACATATAAACAATGGAGGAGGGGAtggtaaaaaactgaaaactttt
ataaaaactgGATAGTCTTCGGAAAGCAAATCACCCTCAAACCAAAGAAA
GAAGGACAGTCAGTTTTATTTTATGTAAATGTAGAATTTAAATGTAGACT
CAAGGatataaatataaatcaaaTATTGTAAATTTAGATGTAGTAACTTA
TCAAACAATTTATGAAAGATATCGTTTTAAGATGTCATTACAGTT Coding sequence (CDS) from alignment at sc0000211:132818..134462+ >TCONS_00015420 ID=TCONS_00015420|Name=TCONS_00015420|organism=Clytia hemisphaerica|type=CDS|length=2082bp|location=Sequence derived from alignment at sc0000211:132818..134462+ (Clytia hemisphaerica)
atgttttggaaaaagaaaaaggtggTTATAGAGCAGACGACTTATGAAGC
TGGTCGCCACCATGCTGCAGAAGACAAACTTTCCAAACTTGTAGAAGAAT
AtgagaaattcaaaaacatGTGGAAGGAAACGAAAATGGAAAACGAGCGA
CTTCGGTACTTATGTCGATGTCAAAAACAAGAGATCATCAAGAAAAATCG
CTTGTTGGTGGAGAAAAACTCGCTGTTGTCACAAATCGAAGAATCGACGC
ATGCGTTGAAAGACGCATTCAGAACGACGGACGACAATTTCCAAAGTTCG
CAAGAAGAATTACGCGAAAAAGAGAAGTCAATCAATAGTctgaagaaaat
caaaacaaatctggTCGTCACGAAGGAACGCACAGAAAACGAACTATGGA
GACTGAGGCGCGAATTGTCACAAATTGGTGAGCTGATCATACAACATAAC
GAAGATATGTCGCTTCTTAAAGACCGTTTGACGGACACAAAGGAACGAAA
TAACGACTTGTGTGATGAACTGGATGAAGTTGAATCAACCAACCAACAAT
TGGTAGACGAACTGGATTCAGTGGTTGCTGAGTTAGAAACGATCAAAACG
GACCATGAGGACACACAACAAGAATTGAAAGCATGTCGTGAATGGAATGA
AAAACTTTGTGAACAATTCTTACAATCAGAAATGAGGAATCAAGAACTGG
TGAATCAGTTGAATGGGACAGTTGAGGAGCATACTCATTATTTGGAAGTG
GAAGGAAAGTTGGTCAACAAACAAAAAGAAGTTGTCATTAAAGGTGAACA
ATTGAAAGATATTAAGTCACGTGATGAGAGAGTGGCTTTACTTTTATTAA
AGCTTGCAAGCTCCATTAAAAGTCAAGTCAAGAAACCAAGTAAACCAAAG
AATTGCATCATGTACCCATTCCAACAGATTGTTCCCAAGAAGAAAAAACC
AAACACCAAGAATGGAGTGAAAAATTACTTGTTCGATGAACGTTTTGGTA
TGGTGCAAGAACTGTTAGGAGAATTCGTTCATGCTTGTTGAatgttttgg
aaaaagaaaaaggtggTTATAGAGCAGACGACTTATGAAGCTGGTCGCCA
CCATGCTGCAGAAGACAAACTTTCCAAACTTGTAGAAGAATAtgagaaat
tcaaaaacatGTGGAAGGAAACGAAAATGGAAAACGAGCGACTTCGGTAC
TTATGTCGATGTCAAAAACAAGAGATCATCAAGAAAAATCGCTTGTTGGT
GGAGAAAAACTCGCTGTTGTCACAAATCGAAGAATCGACGCATGCGTTGA
AAGACGCATTCAGAACGACGGACGACAATTTCCAAAGTTCGCAAGAAGAA
TTACGCGAAAAAGAGAAGTCAATCAATAGTctgaagaaaatcaaaacaaa
tctggTCGTCACGAAGGAACGCACAGAAAACGAACTATGGAGACTGAGGC
GCGAATTGTCACAAATTGGTGAGCTGATCATACAACATAACGAAGATATG
TCGCTTCTTAAAGACCGTTTGACGGACACAAAGGAACGAAATAACGACTT
GTGTGATGAACTGGATGAAGTTGAATCAACCAACCAACAATTGGTAGACG
AACTGGATTCAGTGGTTGCTGAGTTAGAAACGATCAAAACGGACCATGAG
GACACACAACAAGAATTGAAAGCATGTCGTGAATGGAATGAAAAACTTTG
TGAACAATTCTTACAATCAGAAATGAGGAATCAAGAACTGGTGAATCAGT
TGAATGGGACAGTTGAGGAGCATACTCATTATTTGGAAGTGGAAGGAAAG
TTGGTCAACAAACAAAAAGAAGTTGTCATTAAAGGTGAACAATTGAAAGA
TATTAAGTCACGTGATGAGAGAGTGGCTTTACTTTTATTAAAGCTTGCAA
GCTCCATTAAAAGTCAAGTCAAGAAACCAAGTAAACCAAAGAATTGCATC
ATGTACCCATTCCAACAGATTGTTCCCAAGAAGAAAAAACCAAACACCAA
GAATGGAGTGAAAAATTACTTGTTCGATGAACGTTTTGGTATGGTGCAAG
AACTGTTAGGAGAATTCGTTCATGCTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015420-exon-sc0000211-1491911889:132818..133070 | TCONS_00015420-exon-sc0000211-1491911889:132818..133070 | Clytia hemisphaerica | exon |
| TCONS_00015420-exon-sc0000211-1510915933:132818..133070 | TCONS_00015420-exon-sc0000211-1510915933:132818..133070 | Clytia hemisphaerica | exon |
| TCONS_00015420-exon-sc0000211-1575043694:132818..133070 | TCONS_00015420-exon-sc0000211-1575043694:132818..133070 | Clytia hemisphaerica | exon |
| TCONS_00015420-exon-sc0000211-1491911889:133222..134462 | TCONS_00015420-exon-sc0000211-1491911889:133222..134462 | Clytia hemisphaerica | exon |
| TCONS_00015420-exon-sc0000211-1510915933:133222..134462 | TCONS_00015420-exon-sc0000211-1510915933:133222..134462 | Clytia hemisphaerica | exon |
| TCONS_00015420-exon-sc0000211-1575043694:133222..134462 | TCONS_00015420-exon-sc0000211-1575043694:133222..134462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:132818..134462 + |
Blast
The following BLAST results are available for this feature:
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