TCONS_00015418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015418
Unique NameTCONS_00015418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015418 ID=TCONS_00015418|Name=TCONS_00015418|organism=Clytia hemisphaerica|type=transcript|length=984bp
GttctgcaaaaattagttcccttaaagtaCTATCTCAATACTattatttt
tcagtttcagATTTAAAAGATTTAAATTTATAAGAGAAATAAACAAGAAA
TGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATG
GAAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGATGGTGACTCACC
TGACACTTCACCAAAACTTTCTGATGATGAAGCAATGACCGAAGCATTGG
CTGATGCTCAAAATGAAATGGCTAAAAGTATCTTAAAGAAACCAAGCGTT
CAAGAAGAAGAAGCTGAACCATCTCAGaccAAGTCGTCAAAACGCGAGTC
AAGcggATACGACGTAGCAAATCACCCAGCTGTTTACGTCTCATCACTCT
TATTTTCACACACACTGGTATTTGCTTTAGGGTTGATTGTTGGCAAGAAA
TTGGCATCACAACCAAGACTTTAAAACGAAAAAGAATCGAATCAAAGTTA
TTGTTCATTCAAGTTGATGACTTTTAAATTATTCGGGTCCATCTAATTTT
GTTTGCTACGGAtggaatcattttttttttaattttagaaattgttccaa
tgaattttttgatttttagtataTAGATAGTTAGACATATTATGACAATT
TTCAAGTTGATACATTTTCCGACATCggactttttttgttttggtaatCA
TATGAAAATAAAGGCAAAAAAATTCCTTAGCAATCAAAGACCACTTGTTA
AAACTTTTCAGGTTGCTTAAAGTGTTAATTTTGGGTAATTGTCGGAATCG
ACTGGAAAATGAGTTGATTTTTTAGAATATACAGGATTTGTCTTAATTCa
tacttttttatattttcgcaaaaaaaaataattataaatatTTGCATTAG
TTAGTTTTATTTCTTATAACGTTTTCCAAATTATTTATGTTTCGTTATTC
TTAAAGTTAAAAAAGATACATCGAAAGATATTAT
Run BLAST on NCBI

transcript from alignment at sc0000211:97487..100697+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015418 ID=TCONS_00015418|Name=TCONS_00015418|organism=Clytia hemisphaerica|type=transcript|length=3211bp|location=Sequence derived from alignment at sc0000211:97487..100697+ (Clytia hemisphaerica)
GttctgcaaaaattagttcccttaaagtaCTATCTCAATACTattatttt
tcagtttcagATTTAAAAGATTTAAATTTATAAGAGAAATAAACAAGAAA
TGAGTGAATCTCAAGATCCTGTTGTTCCTCCAGTTGAACCAACCCAAATG
GAAGGTATAACTTTCTTAAAACATAACTTGTAACTGCTTGAAAAAGACAC
TTTTTCCAGTTTGAAAGTAAATTTCTCTGAGATTTTATATTTATctgaat
ttttttggaaagtaagttatttttctttggaaaatacaaacttctttttt
acccaagaccaatttttctcttattttctttctttcgtaTTATATTATTC
ATTTTTTACATTTCCCAAGGTAAATGAAGTAACTTGATTATAGAATACTC
AGATGTATATTTTTCAAGACTTTGTCTTGGTTTGATCAATGTACACTGAC
TTAAAAgttcataaatttttttgcaatttttttctataCAGAATTTTAAA
TTCATTCACAAAATATTGCGGTATGTAATAGAGGAATCGGTCATTTACCA
ACTTTTCTCTTTGCAGGCTCATGGATTCAATTAGATTCAAAAAGTAAAGA
TGGTGACTCACCTGACACTTCACCAAAACTTTCTGATGATGAAGCAATGA
CCGAAGCATTGGCTGATGCTCAAAATGAAATGGCTAAAAGGTGTGTACTC
TCAAGTGAATCGCCTTTGACTAAGGAGAAATTAACGAAAGggaagaaaaa
tacaaaagaaaatacaatATAAGGGTTTTAAAAGCGTGtaggtttaaaaa
agaaaattaacaagTTCTGTAAAAAGTCGATTTTACAGTCAGTTATTATT
AGAAGTTTAATACCATACAAATAGCCATTTTAATTAGctaagaattttca
tttttataccaATATTatttacactttttttgaaaGGACAGTATCTAGAG
AGGTGCAGTTCTATTAGAATGCTGATTACCTCAAGCTTTAATTTGCTATG
TGGTTTTCTTAACAAAATAGTAGATCTTTGCTTTCTGGACTTCAAAAAAT
TTATGCACTTTAtgtaatcaaaaatgatttgACATTTTGGACTTCTTTCC
TTTACCAGTATCTTAAAGAAACCAAGCGTTCAAGAAGAAGAAGCTGAACC
ATCTCAGGTTTAACTTTTACTTTAATGAAGAAATTACCAAAACTTGTAGA
AACTCgcgaaattttcatttctaCCCGATCCAGGACAGAGAGATGGCCAG
GGGTACTTATTTTTACCTAAGTACCGCTGCCAGACCcttgataaaaaaca
aatgcaGCCCATGTTATCTTACAAccctttcaaaaatgtttatttgtTTG
TGTGAATCCATAGAGGCTTTATTTTCGATAGATTTGGATAATCTGCTTCT
TCTGCTTGATAAAAAGTGCCCTTATTGTGCCTGTTTCAATCTCAATCTCC
TGATAACAATAATgactcttttttttgttttagaccAAGTCGTCAAAACG
CGAGTCAAGGTTAGTAGTTCTCAATTACCAGTTCAAAATTTAACCGGTTC
TTTATTGAAATTCCCTctcttttttgagaaattacGGAAGTGTAACTTTT
TCGCTAAATCTAGGAGTAACACTAAATTTAATAGGAATTGGTGGTAATGC
GAATGTCAGATTAGCTTACTCTCAGCGTGCTTAATAAATACCCCTATCTT
TGCTAAAATTAATTGATAAAGGGAGAGTCTTGCTTTAAACCATCTGATGT
TAGACTATATGACTTGTTATTTTCTAACCCCACCCCGTCAATCTGGACCC
GTTTATTAGAGTTTGAACATTTTGTCCAACTCCTCCCTTATGACATCCTT
TCGTTTAAAGTGTATCTGAGAGTAACCCTTAAGCATATATTTATCTGTGA
AGAGCTATAGGTTTAAGCCAAGTcatattttagattttgagatgTAATGA
gctaattcttcttttttgcATGCAGAAAATCAATGTTCAGTTTAAGAGGA
TCTTCTTTAATCGACTGGTAATTACATTCACTTATACCTTCGCTAattca
ctcactcactcactcgtTCACATGTACAACTTTTATATACATGCATGCAT
TTTGAACCTGAGCAATAGTCCAAGTCAAGTTAGCTACAGGGCAAGTTAAT
AAAAATGATGCCAGTTTTGGTAGCTGTGAAAAAAAGTCCTAATATTTTAT
TTACGCATATTAGAATGTTTGCTGAAATTAATGTAATAGTTATAGctctt
ctttttctctttttagcggATACGACGTAGCAAATCACCCAGCTGTTTAC
GTCTCATCACTCTTATTTTCACACACACTGGTATTTGCTTTAGGGTAAGT
AAGATTTCCAACGTGCTACATATTTCCTGCGGCTTCGCTTCCATATTTCT
GGACAtacgaattcttttcaaattgaCTGGGAATGGGACTTCCCTAAAAT
CACTTTCAAATTACCCATGTTATCTAGCAACCATGGTGGGCAACGTTAAT
TTATTCCAAGTTTCTGTGCTCTCTACTTCAACGCTCGGGATGTTTTCAGT
GTTGTCCTATGCtgttagcttttttttttgctttttcattctctcttttt
aagttttttttataggaattcagaaaatttctaacttttttctaaatttt
tcttcCAGGTTGATTGTTGGCAAGAAATTGGCATCACAACCAAGACTTTA
AAACGAAAAAGAATCGAATCAAAGTTATTGTTCATTCAAGTTGATGACTT
TTAAATTATTCGGGTCCATCTAATTTTGTTTGCTACGGAtggaatcattt
tttttttaattttagaaattgttccaatgaattttttgatttttagtata
TAGATAGTTAGACATATTATGACAATTTTCAAGTTGATACATTTTCCGAC
ATCggactttttttgttttggtaatCATATGAAAATAAAGGCAAAAAAAT
TCCTTAGCAATCAAAGACCACTTGTTAAAACTTTTCAGGTTGCTTAAAGT
GTTAATTTTGGGTAATTGTCGGAATCGACTGGAAAATGAGTTGATTTTTT
AGAATATACAGGATTTGTCTTAATTCatacttttttatattttcgcaaaa
aaaaataattataaatatTTGCATTAGTTAGTTTTATTTCTTATAACGTT
TTCCAAATTATTTATGTTTCGTTATTCTTAAAGTTAAAAAAGATACATCG
AAAGATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008614XLOC_008614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015418-exon-sc0000211-1491911889:97487..97640TCONS_00015418-exon-sc0000211-1491911889:97487..97640Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:97487..97640TCONS_00015418-exon-sc0000211-1510915933:97487..97640Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:97487..97640TCONS_00015418-exon-sc0000211-1575043694:97487..97640Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1491911889:98053..98176TCONS_00015418-exon-sc0000211-1491911889:98053..98176Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:98053..98176TCONS_00015418-exon-sc0000211-1510915933:98053..98176Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:98053..98176TCONS_00015418-exon-sc0000211-1575043694:98053..98176Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1491911889:98595..98643TCONS_00015418-exon-sc0000211-1491911889:98595..98643Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:98595..98643TCONS_00015418-exon-sc0000211-1510915933:98595..98643Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:98595..98643TCONS_00015418-exon-sc0000211-1575043694:98595..98643Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1491911889:98970..98995TCONS_00015418-exon-sc0000211-1491911889:98970..98995Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:98970..98995TCONS_00015418-exon-sc0000211-1510915933:98970..98995Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:98970..98995TCONS_00015418-exon-sc0000211-1575043694:98970..98995Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1491911889:99753..99830TCONS_00015418-exon-sc0000211-1491911889:99753..99830Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:99753..99830TCONS_00015418-exon-sc0000211-1510915933:99753..99830Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:99753..99830TCONS_00015418-exon-sc0000211-1575043694:99753..99830Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1491911889:100145..100697TCONS_00015418-exon-sc0000211-1491911889:100145..100697Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1510915933:100145..100697TCONS_00015418-exon-sc0000211-1510915933:100145..100697Clytia hemisphaericaexon
TCONS_00015418-exon-sc0000211-1575043694:100145..100697TCONS_00015418-exon-sc0000211-1575043694:100145..100697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:97487..100697 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
75.9543	78.4224	98.5819	98.424	11.2035	6.42035	22.3999	26.9697	33.1591	36.4027	28.4792	14.1943	8.85272	12.4954	25.7298	23.8853	44.9594	31.4049	6.92014	10.1536	19.9524	22.365	45.8119	40.3698	40.0512	37.0278	78.4087	54.2936	84.7104	60.4902
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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