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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015414 ID=TCONS_00015414|Name=TCONS_00015414|organism=Clytia hemisphaerica|type=transcript|length=6058bpRun BLAST on NCBI transcript from alignment at sc0000211:38842..54583+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015414 ID=TCONS_00015414|Name=TCONS_00015414|organism=Clytia hemisphaerica|type=transcript|length=15742bp|location=Sequence derived from alignment at sc0000211:38842..54583+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015414 vs. Swiss-Prot (Human)
Match: DYH7 (Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2) HSP 1 Score: 2274.2 bits (5892), Expect = 0.000e+0 Identity = 1106/1575 (70.22%), Postives = 1328/1575 (84.32%), Query Frame = 1
Query: 1 DGSPLALFNLFIERTKEMLHIVLAMSPIGEAFRNRLRKFPSLISCCTIDWFQEWPEDALTVVAQRFLADVNLSSAVIKGCVKICKTFHVTTRDLSKRFFNELKRNNHVTPTSYLELISTYKTLLAQRQETVMKQKQRYEVGLEKLASAASQVSTMQVELRDLQPKLVVAQKEVDEVMKVIEVDSVEVAKTEKIVKADEAVANEQAMAAKAIKDECDRELAEAIPILESALAALNTLTPKDITVVKSMSNPPPAIKMVMEAICSIKGIKPDRVPDP-ATGKRVEDYWGPSKKLLGDMKFLDSLKTFDKDNIPPANVKIIRDKFLPDPEFVPDKIRSASTAAEGLCKWVIAIESYDRXXXXXXXXXXXXXXXEGELAEAMGSLELKRANLKEVQDKLAKLQETFDINTKKKEDLEKQVDMCSKKLIRAEQLIGGLGGEKDRWSKSAHNLGVTYENLSGDVLISSGVVAYLGAFTSNYRQEQTNEWTSVCKKIGVPCSDVVSPTHILGDPVKIRDWNISGLPTDXXXXXXXXXXXXXXRWPLMIDPQGQANRWVKNMEKG-SLSVIKLSDADYIRTLENSITFGNPVLLENVGXXXXXXXXXXXXKQVFKQGGSMCMRLGDSTIEYSKDFRFYITTKLRNPNYPPETAVKVTLLNFMITPEGLQDQLLGIVVARERPELEEEKNALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIQVLSSSKTLSNEIAEKQAIAEETEKKIDLARLGFKPIAIHSTVLFFTIADLANIDPMYQYSLSWFINLFINSIDNSERAENLDVRLKNLENHFTYSLYCNICRSLFEKDKXXXXXXXXXXXXKHHKQVCEENWRFLLTGGVGLDNPFPNPAESWLPKQSWDEFCRLNDMPSFGKIHTGFKMLEKGWKAIYDSNEPQHVELPGEWNTKLHSFQKMIVLRCIRPDKIVPAVQDFVTEKLGKKYIEPPPFDLAKSFDDSSCCTPIIFVLSPGSDPTVALLKFADDQGFSGSKMSSLSLGQGQGPIAMKMIEKATREGSWIVLQNCHLAVSWMPTLEKVCEEFNPETTHPDFRLWLTSYPSPHFPVSILQNGVKLTNEPPKGLRANITRSYLSDPICDPDFFTGCQKPEEFKKMLFGLCFFHGLVQERRKFGPLGWNIPYEFNETDLRISVRQLNMFMNSYEEVQFEALKYLTGECNYGGRVTXXXXXXTLMTILNTCYLPNIIDHEKYAFSESGLYYAPPSGDYDSYINYVKSLPLNPHPEVFGMHANADISKDQQETKLLFDSILLTQARASSGGGKSDDDVIGDVAEDILSKLPKNFDTEATLRKYPTTYSQSMNTVLVQEMVRFNNLTTVVRSSLQNLKKAIKGLVVMSSDLEEVYSSILNGKIPGLWRSKSYPSLKPLGSYVNDLLARLKFLQDWFDKGVPNTFWVSGFFFTQAFLTGSQQNFARKYRIPIDLLAFDYEVMKESTFTDPPEDGVYIYGLFMEGARWDSKNMVIGESTPKKLYDEMPIFWLKPCRKGEQVERLHYTCPVYKTSERRGTLSTTGHSTNFVMEMRVPSAVPPAHWIKRGVALLCQLNT 4719
DGSP+ALFN+FI+ + LH+VLAMSPIG+AFRNRLRKFP+L++CCTIDWFQ WPEDAL VA RFL ++ +S + GC+ +CK+FH +T DLSK FF EL+R N+VTPTSYLELIST+K LL +++ VMK K+RYEVGLEKL SA+SQV+TMQ+EL L P+L VA KEVDE+M +IE +SVEVAKTEKIVKADE +ANEQAMA+KAIKDECD +LA A+PILESALAAL+TLT +DITVVKSM +PP +K+VMEAIC +KGIK D++PDP +GK++ED+WGP+K+LLGDM+FL SL +DKDNIPPA + IIR ++P+P+FVP+KIR+ASTAAEGLCKWVIA++SYD+VAK+VAPKK L AEGEL AM L K+A LKEVQDKLA+LQ+T ++N +KK DLE QVD+CSKKL RAEQLIGGLGGEK RWS +A LG Y NL+GD+LISSGVVAYLGAFTS YRQ QT EWT++CK +PCSD S LG+ V IR WNI+GLP+D+FSI+NGIII N+ RWPLMIDPQ QAN+W+KNMEK SL VIKLS+ DY+RTLEN I FG PVLLENVGEELDP+LEPLLLKQ FKQGGS C+RLGDSTIEY+ DFRFYITTKLRNP+Y PET+VKVTLLNFMITPEG+QDQLLGIVVA+ERP+LEEEK ALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAI++LSSSK L+NEI++KQ +AEETEKKID R+G++PIAIHS++LFF++ADLANI+PMYQYSL+WFINLFI SI+NSE++E L RL+ L++HFTYSLY N+CRSLFEKDKLLFS L INLL H + + + WRFLLTGG+GLDNP+ N +WLP++SWDE CRL+D+P+F I F L+ GWK +YDS EP H P EW K + FQ+M+++RC+RPDK++P +Q+F+ +LG+ +IEPPPFDLAK+F DS+CC P+IFVLSPG+DP ALLKFADDQG+ GSK+SSLSLGQGQGPIAMKM+EKA +EG+W+VLQNCHLA SWMPTLEKVCEE +PE+THPDFR+WLTSYPSP+FPVS+LQNGVK+TNE PKGLRANI RSYL DPI DP+FF C+KPEEFKK+L+GLCFFH LVQERRKFGPLGWNIPYEFNETDLRISV+QL+MF+N YEE+ +EAL+Y+TGECNYGGRVTDD DRRTL +ILN + P ++++ Y F SG+Y+ PPSGD+ SYI Y K+LPL P PE+FGM+ANADI+KDQ ET+LLFD+ILLTQ+R++ G KS D+V+ +VA DIL KLP NFD EA +R+YPTTY+QSMNTVLVQEM RFN L +R S N++KAIKGL VMS+DLEEV SSILN KIP +W KSYPSLKPLGSYVND LARLKFLQ W++ G P FW+SGFFFTQAFLTG+QQN+ARKY IPIDLL FDYEVM++ + PPEDGV+I+GLF++GA W+ K + ES PK LYD +P+ WLKPC++ + +R Y P+YKTSERRG LSTTGHSTNFV+ M +PS P HWI RGVALLCQLN+
Sbjct: 2451 DGSPIALFNMFIDHCRSQLHVVLAMSPIGDAFRNRLRKFPALVNCCTIDWFQSWPEDALQAVASRFLEEIEMSEEIRDGCIDMCKSFHTSTIDLSKSFFVELQRYNYVTPTSYLELISTFKLLLEKKRSEVMKMKKRYEVGLEKLDSASSQVATMQMELEALHPQLKVASKEVDEMMIMIEKESVEVAKTEKIVKADETIANEQAMASKAIKDECDADLAGALPILESALAALDTLTAQDITVVKSMKSPPAGVKLVMEAICILKGIKADKIPDPTGSGKKIEDFWGPAKRLLGDMRFLQSLHEYDKDNIPPAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIVAPKKIKLAAAEGELKIAMDGLRKKQAALKEVQDKLARLQDTLELNKQKKADLENQVDLCSKKLERAEQLIGGLGGEKTRWSHTALELGQLYINLTGDILISSGVVAYLGAFTSTYRQNQTKEWTTLCKGRDIPCSDDCSLMGTLGEAVTIRTWNIAGLPSDSFSIDNGIIIMNARRWPLMIDPQSQANKWIKNMEKANSLYVIKLSEPDYVRTLENCIQFGTPVLLENVGEELDPILEPLLLKQTFKQGGSTCIRLGDSTIEYAPDFRFYITTKLRNPHYLPETSVKVTLLNFMITPEGMQDQLLGIVVAQERPDLEEEKQALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIKILSSSKALANEISQKQEVAEETEKKIDTTRMGYRPIAIHSSILFFSLADLANIEPMYQYSLTWFINLFILSIENSEKSEILAKRLQILKDHFTYSLYVNVCRSLFEKDKLLFSFCLTINLLLHERAINKAEWRFLLTGGIGLDNPYANLC-TWLPQKSWDEICRLDDLPAFKTIRREFMRLKDGWKKVYDSLEPHHEVFPEEWEDKANEFQRMLIIRCLRPDKVIPMLQEFIINRLGRAFIEPPPFDLAKAFGDSNCCAPLIFVLSPGADPMAALLKFADDQGYGGSKLSSLSLGQGQGPIAMKMLEKAVKEGTWVVLQNCHLATSWMPTLEKVCEELSPESTHPDFRMWLTSYPSPNFPVSVLQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCKKPEEFKKLLYGLCFFHALVQERRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQYEELPYEALRYMTGECNYGGRVTDDWDRRTLRSILNKFFNPELVENSDYKFDSSGIYFVPPSGDHKSYIEYTKTLPLTPAPEIFGMNANADITKDQSETQLLFDNILLTQSRSAGAGAKSSDEVVNEVASDILGKLPNNFDIEAAMRRYPTTYTQSMNTVLVQEMGRFNKLLKTIRDSCVNIQKAIKGLAVMSTDLEEVVSSILNVKIPEMWMGKSYPSLKPLGSYVNDFLARLKFLQQWYEVGPPPVFWLSGFFFTQAFLTGAQQNYARKYTIPIDLLGFDYEVMEDKEYKHPPEDGVFIHGLFLDGASWNRKIKKLAESHPKILYDTVPVMWLKPCKRADIPKRPSYVAPLYKTSERRGVLSTTGHSTNFVIAMTLPSDQPKEHWIGRGVALLCQLNS 4024 The following BLAST results are available for this feature:
BLAST of TCONS_00015414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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