TCONS_00015393 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015393
Unique Name	TCONS_00015393
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1807

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000211:16992..21894+

transcript sequence

>TCONS_00015393 ID=TCONS_00015393|Name=TCONS_00015393|organism=Clytia hemisphaerica|type=transcript|length=1807bp
ATTATAGTCGAAAGCATTTAGATGTTATGATTATTGAGAAAACTGTAGAT
AATGAATTTCAAATTGACAATGTGATGCAAAGATGATGAGAGAAGCAAGT
GCAAGGTCACCAAGCAAGAAGTCAAAAGTTGGAGATCcaccaacaaaatt
tcttccaagtCTCCCGGAGACCCGAAGAAAGCCAGAATGGCAACAAATCA
ATTTCAAAGGGCCTATGAAGTTAGATGGAGATTGTGTTGAACTGACACGT
TCAATAGATGGGAACAATAAGAACAACAGCTTAGTGAAGAAAACTTCCCA
TCCTTTACCACCggtcaaacaacaaaaaagactAAGTCAAGTTAGTAGCA
GCGGAAAAACTGGCATCTCGTACCCAAAAAAGGATAGAGAAGCTTTTCGC
CAAGCTCTCGTTAGCATCATCATGCAAAACGAGGATGCAACAGGCTCACC
AAAAGTCCCTTCAGTGACCGATAAAGATTATGAGCCAGGAAGACCAGGAT
CACCCTCACATGCTGAAAAGGATGTTCTGAGATATTATTATTACATACAT
CACGGCATTGATACCAAGAACGTTGCTCCCATGGAAGATGTTTGGATTGA
TAATGTGCTTTCATTGGTTCCTGCTGCAACTAAGATGAATTTAGAAGAGC
TGATAGAAGATTTATCTGATGAAGTTCGAGAGGATTATCTGCTCAGTGTG
AAGAAAGCCATTGTTGATTTTGTGTTGAGAGATCCAAGAGAGAAAGAGAA
CAATGTTGTGGAAGAAACACTCCCCCATCGAATCGAGATGATGCAAGTCC
CCAAGCCATGGAAACAGTCATTCCTGTCGGCCTACGCAACAATGGAGCAT
GAGTTGCATATCACAAACCCTACTATGATGGCTGTGTTGAGTTTGTGGCA
CAAAAATTACAGTGCTCTTTCATTGGTGAACCGAGAAGATATCAAAGAGA
GAAACGAAGCAATGGAGTTATCTTTCTTTCAAAACCTCCTCATGAGACAC
GTGGAAAACGCTAAAGAAACACTACTCAAAAAGTGGTTTCCAGAAGTACA
GAACATTTTTTACCAAGGTAACAAACGAAAATTGTTGCCAGGAACTCAAC
AACGAAAACGTTTGACTGCATTCTTTAATTCTGCTGCTATCCTCATGAGT
AATCAACTGCAAAGTCTGGCTCTCTCCTCTCTTAACGAGTTCGAATCACT
GTTGCAGCCAATCAGTCAATCGTCTGGTAGGTTCGCGAGGTTCACCCATC
CCGGGTTCGTGATACGACTTGTGTTAGATGGGAGCACCGTTAAGTTTGAA
CCAGATTTTCATGACTTTGAAGTGATTCTTCTCAACGTGTTCGATGTAAT
GTTAAAAGCTGTGACAGTCGTGCCCTGTGTGGAGACTAAATTGTATTCAG
AATGGTCTGGTCAAAAGAAATATCTTAGACCTAATATCTTAGATTCAATC
CTTGAAACGTTGAGAAATAGTGTTTCGAAGATTGTGAAGCAACAGAGTGC
TGGTCCGATCGCTCACGCCAGAGAATATGATCGTTTTGAGAATTTGATCA
CGAGTAAAGCAGAAACGGAGATCGAAGAGTATCTTTTGCAGAGTCATACG
TTTGAAGAACTGGCCGAAGAAGTTTCGAGATACAATGCTTTGATTGACGA
AATCTCATTTGATTGCCAAAAGGTCGTGTCCACGGGTATGTTTGAAATGC
ATTGCGATGAGATCATTCGAACGTTGACAAAACGTGCAGAAAACGTTCGA
TCACGCCTCTTAACCAAAATGTTGCAAGATCATTCAGTGGCCAACAAAGC
TCTCTCC

Run BLAST on NCBI

transcript from alignment at sc0000211:16992..21894+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015393 ID=TCONS_00015393|Name=TCONS_00015393|organism=Clytia hemisphaerica|type=transcript|length=4903bp|location=Sequence derived from alignment at sc0000211:16992..21894+ (Clytia hemisphaerica)
ATTATAGTCGAAAGCATTTAGATGTTATGATTATTGAGAAAACTGTAGAT
AATGAATTTCAAATTGACAATGTGATGCAAAGATGATGAGAGAAGCAAGT
GCAAGGTAGGCCTATAgattcaaattttaaacaaacaatagaaatatgga
CAATGAGAATGTTGATTTGATTGCATTATATTTATTATCATGTCAAAGGA
CAAAAATTATCATTCATGCAACGTTTTAgttgaaaatgaaagatttttaa
aaatttcttaggCCTTGTTATATTCAACAATTTTTGTCGTTGATTTACTG
CTATGTATTGTTTTGATTGTTATATTATTGTACTAAAGGTCACCAAGCAA
GAAGTCAAAAGTTGGAGATCcaccaacaaaatttcttccaagtCTCCCGG
AGGTAAAATCTGAAGAGTTTAGGGAATTCCATTAGAAACAGAAAATACCA
CTCAATgtctaagtttatttttcgaaatttgattGGCAGGTTACAGTATA
CATAAGAGGACAATGAAGCTGGTTGGAGATCAACCAATATATAATTTTAT
AACATTAAACTCAAGATAACATGAATTTACTAGGAAAGCAAAACAAAAGT
ATATCTTTTTTTATATGATTTAGACCCGAAGAAAGCCAGAATGGCAACAA
ATCAATTTCAAAGGGCCTATGAAGTTAGATGGAGATTGTGTTGAACTGAC
ACGTAAGAAGAACAATTCGTGTTTAGAGCCCAAtgtattttgaactttta
aagtTTGTGTCATCTTTGAATTAATTAATAAGATGCCATCATGAAGATTG
TCCAAGATGTTTTGACATACGAATCTTACCAGTCAAAATAAGAAgctttg
tttattatttttcttgctCCAGGCTAATTGTGTTTATTTGAATCTAATGA
GATTTTTCTAGATCCTTTTATTCTGTATAGTAACGTCTTAGTTAGCTTTC
AACTTTTCACCTAGTTTAATATTGCTTCAATCAAGAATTAAGTTTGTCTG
CGATTATGTAGTAAGTATGGTATAATGGCAATCCAACTTATTTGGTCAAT
CAGGTTCAATAGATGGGAACAATAAGAACAACAGCTTAGTGAAGAAAACT
TCCCATCCTTTACCACCggtcaaacaacaaaaaagactAAGTCAAGTTAG
TAGCAGCGGAAAAACTGGCATCTCGTACCCAAAAAAGGATAGAGAAGCTT
TTCGCCAAGCTCTCGTTAGCATCATCATGTAAGTTACTTTTCATTCTCAA
CACCTCTCATAAAATATATTATGAGGTTTAGTTAAAGTGTAATGGAAAAT
TCTAGAAATCTTGTATTATACCATACAAAGGATAATTTCAAAACCCCTTC
TAGTTTAAAGTTCTGGTGGCTACCCAAAAATGTATAAGTCATTTTCTAAT
TAAGTCTAAGTGGGACCTAATATTTCCCTGATACCTGAACCTAACCTTAT
TATATGGATATATATTGAggctttaaattttcttatctTGATAATGCCTT
TATTAAATCAAGTTTTAAGTCCAGATATTTTACAACGCAATTTCTATTAC
ATCAGGCAAAACGAGGATGCAACAGGCTCACCAAAAGTCCCTTCAGTGAC
CGATAAAGATTATGAGCCAGGAAGACCAGGATCACCCTCACATGCTGAAA
AGGATGTTCTGGTAGGCTTTTTAttgatactttttgaaattaaagCACTG
AAGTCACTAACGCTCAAATATTTCCAGACCATTACCTGCTGTACTGTGAA
AAATCNAGAAATTAAAGCACTGAAGACACTAACGCTCAAATATTTCCAGA
CCATTACCTGCTGTACTGTGAAAAAGCTGAGTGTCAATGTTTCTTTTTCT
GAGAGACTGATCAATCCTTTCTATTTCTTTGCAGAGATATTATTATTACA
TACATCACGGCATTGATACCAAGAACGTTGCTCCCATGGAAGATGTTTGG
ATTGATAATGTGCTTTCATTGGTTCCTGCTGCAACTAAGGTAACTCGCTG
ATCCTGGGCAAAAAAAGTGTgacatttttttgatttaaaatcttttgaag
ATTCAAACTTTTGTTTATACCTTTCACCAGATTCATTATAACGGGTCTTA
AAAATTTCAGAGGTTTTAGACCTCAGTAGCTTGAGACTTGAAATGGTATA
TCCGAAATTCAGCACCCTCCTAGAAAATGTCAACCTAAAGAGCTATACAA
ATTACTTTAATGGGTTATCAAAGAGACAGGAAATCTTAAAAGTTTTAAag
gtacaaaaaaaaaattcataaatgcATCTTTTACTTTTGACCAGAATTTA
CTCCCATTTCTTATTCTATACAAGAACCGGAACTAAACTATAGTAAAAAG
ATATTTTAGATAGTGAGCCAACATTTGATATTGCTTACTTCTCTGAATAT
TCTCAGATAATTTGATACATCTTACTCCAGCAACCATAAAACAAGCCAAT
TATGTATGTTCCATCCCAACCAATAACACTTTGTCCAACATTCTCTATTT
TACTGAACAATTTCTTTCTTGCCTTCATTTTATTCAGATGAATTTAGAAG
AGCTGATAGAAGATTTATCTGATGAAGTTCGAGAGGATTATCTGCTCAGT
GTGAAGAAAGCCATTGGTACAATAAAATTATACTTTTTCTATTTCTCTAC
TCTCATCAATAATACATTTTGTTATGACGATTATTTTGTTAACCTCTATT
TCTTTGTGAATTTCTTTAAAGCTGGACCATTTTGTACTTGATACATTTCT
CTTTCCTCTCTTAAAATTTCCTGGCCCACTAATCCCGATTTTCGGTTGGC
TTAGTCCAACCCTCAGTATTACCACATTCCAGATGCATTGGCTAAAAAAT
ATCTTGTTTTTCTTCAGTTGATTTTGTGTTGAGAGATCCAAGAGAGAAAG
AGAACAATGTTGTGGAAGAAACACTCCCCCATCGAATCGAGTAAGCATCT
CTTTATTTGCAATAATTGTCTAGTTAGAAGATGAGCTTAGTAGCAACCGT
TTAACTCGGCTACAAAACACTCATTGGAAAACAGAGGATTAATTTTTAGA
TTGATCAGTAATTTTCAAACATGTCTTATTGGTGAGATTGTGAACTTTCT
TTTAACTCATACAATGATGGTGGTACCTTTGATTCTCTCTTTGGCAATTT
GAGGTGAATTTAACAAAAACATTTGTTGCTTTCCATAGGATGATGCAAGT
CCCCAAGCCATGGAAACAGTCATTCCTGTCGGCCTACGCAACAATGGAGC
ATGAGTTGCATATCACAAACCCTACTATGATGGCTGTGTTGAGTTTGTGG
CACAAAAATTACAGGTttagattttcagattttgacattttttgataaTT
GTTTCGATACTAATTTTTTCTGCTACAAAAAATCTTTGGGATCCTTATGG
AGACCATTAGCAGTTTTGCGTTATGGCGTGATAGGGAATAAAATTAGGTG
CGATAGTGtaatttgggctatttttcactaattttgCGTGATAAACAAAT
TTTGACGATTTCTGTTTTCATGACGAGAAACATTTGACGTGATGGGGTGA
CCAAAAGTGCTGCTAGGGCCCATTTTAGTTAGAACTGACTTTAATTCATC
TCCACACTTTAGTGCTCTTTCATTGGTGAACCGAGAAGATATCAAAGAGA
GAAACGAAGCAATGGAGTTATCTTTCTTTCAAAACCTCCTCATGAGACAC
GTGGAAAACGCTAAAGAAACACTACTCAAAAAGTAAGCCATTTCTATTTT
AACTTGCTCACATTTTTATAGTCAAGTTAATCGATGTATATCCTGATaat
attgattttgatattaacGTATATTTGATACGATGAAAAGACGGTTCTCT
AATTTTTGAGGTCTGCATATATGTTTTTTGAAATGTTATTTATACTTCAT
TTGTAGACTTTTTTATGTTATACGGAATTTTAAATCTTTCAGGTGGTTTC
CAGAAGTACAGAACATTTTTTACCAAGGTAACAAACGAAAATTGTTGCCA
GGAACTCAACAACGAAAACGTTTGACTGCATTCTTTAATTCTGCTGCTAT
CCTCATGAGTAATCAACTGCAAAGTCTGGCTCTCTCCTCTCTTAACGAGT
TCGAATCACTGTTGCAGCCAATCAGTCAATCGTCTGGTAGGTTCGCGAGG
TTCACCCATCCCGGGTTCGTGATACGACTTGTGTTAGATGGGAGCACCGT
TAAGTTTGAACCAGATTTTCATGACTTTGAAGTGATTCTTCTCAACGTGT
TCGATGTAATGTTAAAAGCTGTGACAGTCGTGCCCTGTGTGGAGACTAAA
TTGTATTCAGAATGGTCTGGTCAAAAGAAATATCTTAGACCTAATATCTT
AGATTCAATCCTTGAAACGTTGAGAAATAGTGTTTCGAAGATTGTGAAGC
AACAGAGTGCTGGTCCGATCGCTCACGCCAGAGAATATGATCGTTTTGAG
AATTTGATCACGAGTAAAGCAGAAACGGAGATCGAAGAGTATCTTTTGCA
GAGTCATACGTTTGAAGAACTGGCCGAAGAAGTTTCGAGATACAATGCTT
TGATTGACGAAATCTCATTTGATTGCCAAAAGGTATTTTACTCCATCTAC
TTCTTGGCAATCATTAAactatttgaaaatgaaaacaaagcttttagaaa
aactaGGATAATATGTTGTAATTGAGTTGGCGAGTGACCAATGAAAATTG
ACGTTCTTAACTGAGTGTTCAGTAAGTCTTTTAATCGGATCAATAATTAT
TTGAACCTCTTTTCTTAGGTCGTGTCCACGGGTATGTTTGAAATGCATTG
CGATGAGATCATTCGAACGTTGACAAAACGTGCAGAAAACGTTCGATCAC
GCCTCTTAACCAAAATGTTGCAAGATCATTCAGTGGCCAACAAAGCTCTC
TCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008612	XLOC_008612	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000211	supercontig	sc0000211:16992..21894 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.299362	0.69145	0.318141	0.236684	14.3431	9.26226	2.14623	2.06417	0.790112	0.99058	0.351838	0.766758	0.0458513	0.0442502	0	0.0427624	0	0.0846495	0	0.106243	0.122248	0.295004	0	0.303733	8.78176	4.6943	0.341302	0.104368	0.0811344	0.0621977

Blast

[Close]

BLAST of TCONS_00015393 vs. Swiss-Prot (Human)
Match: DYH7 (Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2)

HSP 1 Score: 462.996 bits (1190), Expect = 4.841e-143
Identity = 257/567 (45.33%), Postives = 365/567 (64.37%), Query Frame = 2

Query:  140 PTKFLPSLPETRRKPEWQQI--NFKGPMKLDGDCVELTRSIDGNNKNNSLVKKTSHPLPPVKQQKRLSQVS------SSGKTGISYPKKDREAFRQALVSIIMQNEDATGSPKVPSVTDKDYEPGRPGSPSHAEKDVLRYYYYIHHGIDTKNVAPMEDVWIDNVLSLVPAATKMNLEELIEDLSDEVREDYLLSVKKAIVDFVLRDPREKENNVVEETLP-HRIEMMQVPKPWKQSFLSAYATMEHELHITNPTMMAVLSLWHKNYSALSLVNREDIKERNEAMELSFFQNLLMRHVENAKETLLKKWFPEVQNIFYQGNKRKLLPGTQQRKRLTAFFNSAAILMXXXXXXXXXXXXXEFESLLQPISQSSGRFARFTHPGFVIRLVLDGSTVKFEPDFHDFEVILLNVFDVMLKAVTVVPCVETKLYSEWSGQKK--YLRPNILDSILETLRNSVSKIVKQQSAGPIAHAREYDRFENLITSKAETEIEEYLLQSHTFEELAEEVSRYNALIDEISFDCQKVVSTGMFEMHCDEIIRTLTKRAENVRSRLLTKMLQDHSVANKALS 1807
            P + LP L     KP WQQ   +F   +K D +  E   S+     +   +++        K+ K   QV       S+ K+    P K+RE FR  LV++IMQ +DA     VP   D    P +P + S  EKD+LRYYYYIHHGIDT +VAPMED W+++VL LVP   K+  + ++  LSDE+REDYLLSV+K+IVDFVL+DPREK ++   + LP HR EM  +PKPW++SFL+A + +   L+  NPTM+AVL LWH N+  L LV+ ++     +A+ELS FQN++MRH+++AKETLLK WFPEVQNI+YQGNK+K LP      +L +FFN AA LM+ QLQ L L S+ +F  L   I+Q       F HPGF++RL+LD  T+KFEP+  D+  I LNV+DVM+KAV+ VP VETKLYS+W  + K   L+P IL+ I++  +  + +++ ++S  P  H R YD+++ LIT KAE +++ +L ++H++E++ +E+ +Y  LI+EI +   K +  GMFEMHC+E+IR L KRA+ +  +LL KM +DH   N  L 
Sbjct:   38 PARALPQLSMVSTKPHWQQAAPSFHLSVKQDDESPE-PFSVKNEQSHAEYMERFG------KKGKLPHQVDDSYVGPSTSKSKGKSPHKERENFRSTLVNVIMQ-QDADLDSAVP---DGSTIP-KP-TASAIEKDILRYYYYIHHGIDTDHVAPMEDSWLEHVLDLVPQHLKVFTDSIVT-LSDEMREDYLLSVRKSIVDFVLKDPREKGDDKKTDELPAHRAEMEILPKPWRKSFLAASSYIRDHLNAMNPTMLAVLDLWHTNFKKLRLVDIKEFHNCQDALELSSFQNIIMRHMDSAKETLLKMWFPEVQNIYYQGNKKKQLPTGDSSAKLESFFNCAAALMTLQLQDLTLVSMQDFTDL---IAQPPDSVRAFEHPGFIMRLILDNDTIKFEPELSDYIDIFLNVYDVMIKAVSFVPRVETKLYSKWESKSKPTTLKPIILNEIVDAHKEKIKEVIMKESVAPTEHLRLYDKYDFLITRKAERDVDNFLAENHSYEKIIDEICKYQKLIEEIQYTSIKTIRLGMFEMHCEELIRALVKRADIICGKLLAKMFRDHQEVNTRLC 587

The following BLAST results are available for this feature:

BLAST of TCONS_00015393 vs. Swiss-Prot (Human)

BLAST of TCONS_00015393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DYH7	4.841e-143	45.33	Dynein heavy chain 7, axonemal OS=Homo sapiens GN=...	[more]

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TCONS_00015393 (transcript) - C. hemisphaerica