TCONS_00015384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015384
Unique NameTCONS_00015384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015384 ID=TCONS_00015384|Name=TCONS_00015384|organism=Clytia hemisphaerica|type=transcript|length=749bp
GTTGACTTTTTTTAACAGCTTGTTTGATTCATTTTTAGTTTGTAGAATCC
AGGAGATTTTACCAGAAAGAATTTTACAACAACAACGAAGAGAAAATTgc
aaacaataaaatttatttctACATTCAAAATCATATTGATACATTATGTT
ACAAAGAACTGTAGGAACTTTGCAATTTAGCGGCCCCCACAGCAGAACCA
AAATTTGCTCATAATTGGtgaaaaaaggagaaagttgTAATATTTACACA
AAAAATAGCACAGATTCACACAATCAAAAAGCAGATTTTCaagttcacgc
aagttttttcaattcacacattcacgcaaccaaagcCCTTTTACACATTC
ACGCTGACCCTAAAACTTTCAAGAACAAAAAGTTACAGCTTACAAATATT
AATGTATGGGACTCAAAATTTAATCTTTATGACACACTATTCACTGCACA
CCATTCTTACTACGAAAATCTTGTCACAGCCTCAAAACAAAATCGATGAT
CAATAAAAATTGCATTTAAAATTCCTAACAGTCCTTCTACACAAAATATC
TGGTCTACCATAATGAAAAATAACATTAacagtaataataataatacttt
accagaaaaattctaaaagacaATTATAATGTAAGAAAATAAACTCTCTT
CGTTTTTCTCTGACCTTTTTATATGTTATAATtataaatattttggaaaa
aacaatcatattataaaaacaaaatcatatATCTTACTAGATTGAAATT
Run BLAST on NCBI

transcript from alignment at sc0000210:390926..391674

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015384 ID=TCONS_00015384|Name=TCONS_00015384|organism=Clytia hemisphaerica|type=transcript|length=749bp|location=Sequence derived from alignment at sc0000210:390926..391674 (Clytia hemisphaerica)
AATTTCAATCTAGTAAGATatatgattttgtttttataatatgattgttt
tttccaaaatatttataATTATAACATATAAAAAGGTCAGAGAAAAACGA
AGAGAGTTTATTTTCTTACATTATAATtgtcttttagaatttttctggta
aagtattattattattactgtTAATGTTATTTTTCATTATGGTAGACCAG
ATATTTTGTGTAGAAGGACTGTTAGGAATTTTAAATGCAATTTTTATTGA
TCATCGATTTTGTTTTGAGGCTGTGACAAGATTTTCGTAGTAAGAATGGT
GTGCAGTGAATAGTGTGTCATAAAGATTAAATTTTGAGTCCCATACATTA
ATATTTGTAAGCTGTAACTTTTTGTTCTTGAAAGTTTTAGGGTCAGCGTG
AATGTGTAAAAGGgctttggttgcgtgaatgtgtgaattgaaaaaacttg
cgtgaacttGAAAATCTGCTTTTTGATTGTGTGAATCTGTGCTATTTTTT
GTGTAAATATTAcaactttctccttttttcaCCAATTATGAGCAAATTTT
GGTTCTGCTGTGGGGGCCGCTAAATTGCAAAGTTCCTACAGTTCTTTGTA
ACATAATGTATCAATATGATTTTGAATGTagaaataaattttattgtttg
cAATTTTCTCTTCGTTGTTGTTGTAAAATTCTTTCTGGTAAAATCTCCTG
GATTCTACAAACTAAAAATGAATCAAACAAGCTGTTAAAAAAAGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008607XLOC_008607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015384-exon-sc0000210-1491911889:390926..391674TCONS_00015384-exon-sc0000210-1491911889:390926..391674Clytia hemisphaericaexon
TCONS_00015384-exon-sc0000210-1510915933:390926..391674TCONS_00015384-exon-sc0000210-1510915933:390926..391674Clytia hemisphaericaexon
TCONS_00015384-exon-sc0000210-1575043694:390926..391674TCONS_00015384-exon-sc0000210-1575043694:390926..391674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:390926..391674 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0656995	0.144973	0.258855	0.436664	0.620196	0.284644	0.443151	0.803047	0.183136	0.161819	0.14644	0.241234	0.204992	0	0.213333	0.051015	0	0.264975	0.226156	0.315674	0.336804	0.606833	0.390648	0.460186	0.161029	0.268473	0.295706	0.472881	0.560234	0.662816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top