TCONS_00015373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015373
Unique NameTCONS_00015373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015373 ID=TCONS_00015373|Name=TCONS_00015373|organism=Clytia hemisphaerica|type=transcript|length=519bp
ATCGTTTTTTAGTTCGCTTTTCATCTCTACGGAAATGATGAGTTTTCTTT
GCCATGAGATGATCAAAAAGTCTGCTTCTTTATGCATCTTGTTTCGAACA
TTTGTCAGAAAATTGACAGATGAAAGAACAACTGTGTCTTGgagaatgtc
attttttaacGGTACGAGTTGATTATAAAACCAGTGTTCAACATGCTCTC
CGAGCTCTGACAACTCCAAATCGAAAAGCCATCGAAGATTCGAATCCTGT
GTCTTGTTCTCCTCGATCTTCTGTTTCAAcagctttttgaaattcttttc
gaAGAGATATTCGCGTAGAAAGGTTTTAAGCTCTGGCTCTGGTGATATCG
AAGGAAGTTCGTTGATGCACCCTTGAACGAAGACTCCCAGGTCTGATGTG
GTTGTTGGTAGAATGTTGTTGTCCGTTTTGAACTCGTCAATAACCAAATA
CAGGATTTTCAGGTTCACAATCCATTTGTCAAACGCGTTCTTGTCAATAC
GTTCAGCAGCACCATTTTG
Run BLAST on NCBI

protein sequence of TCONS_00015373-protein

>TCONS_00015373-protein ID=TCONS_00015373-protein|Name=TCONS_00015373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
QNGAAERIDKNAFDKWIVNLKILYLVIDEFKTDNNILPTTTSDLGVFVQG
CINELPSISPEPELKTFLREYLFEKNFKKLLKQKIEENKTQDSNLRWLFD
LELSELGEHVEHWFYNQLVPLKNDILQDTVVLSSVNFLTNVRNKMHKEAD
FLIISWQRKLIISVEMKSELKND
Run BLAST on NCBI

transcript from alignment at sc0000210:90347..90865

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015373 ID=TCONS_00015373|Name=TCONS_00015373|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000210:90347..90865 (Clytia hemisphaerica)
CAAAATGGTGCTGCTGAACGTATTGACAAGAACGCGTTTGACAAATGGAT
TGTGAACCTGAAAATCCTGTATTTGGTTATTGACGAGTTCAAAACGGACA
ACAACATTCTACCAACAACCACATCAGACCTGGGAGTCTTCGTTCAAGGG
TGCATCAACGAACTTCCTTCGATATCACCAGAGCCAGAGCTTAAAACCTT
TCTACGCGAATATCTCTtcgaaaagaatttcaaaaagctgTTGAAACAGA
AGATCGAGGAGAACAAGACACAGGATTCGAATCTTCGATGGCTTTTCGAT
TTGGAGTTGTCAGAGCTCGGAGAGCATGTTGAACACTGGTTTTATAATCA
ACTCGTACCgttaaaaaatgacattctcCAAGACACAGTTGTTCTTTCAT
CTGTCAATTTTCTGACAAATGTTCGAAACAAGATGCATAAAGAAGCAGAC
TTTTTGATCATCTCATGGCAAAGAAAACTCATCATTTCCGTAGAGATGAA
AAGCGAACTAAAAAACGAT

Coding sequence (CDS) from alignment at sc0000210:90347..90865

>TCONS_00015373 ID=TCONS_00015373|Name=TCONS_00015373|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000210:90347..90865 (Clytia hemisphaerica)
CAAAATGGTGCTGCTGAACGTATTGACAAGAACGCGTTTGACAAATGGAT
TGTGAACCTGAAAATCCTGTATTTGGTTATTGACGAGTTCAAAACGGACA
ACAACATTCTACCAACAACCACATCAGACCTGGGAGTCTTCGTTCAAGGG
TGCATCAACGAACTTCCTTCGATATCACCAGAGCCAGAGCTTAAAACCTT
TCTACGCGAATATCTCTtcgaaaagaatttcaaaaagctgTTGAAACAGA
AGATCGAGGAGAACAAGACACAGGATTCGAATCTTCGATGGCTTTTCGAT
TTGGAGTTGTCAGAGCTCGGAGAGCATGTTGAACACTGGTTTTATAATCA
ACTCGTACCgttaaaaaatgacattctcCAAGACACAGTTGTTCTTTCAT
CTGTCAATTTTCTGACAAATGTTCGAAACAAGATGCATAAAGAAGCAGAC
TTTTTGATCATCTCATGGCAAAGAAAACTCATCATTTCCGTAGAGATGAA
AAGCGAACTAAAAAACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008596XLOC_008596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015373-exon-sc0000210-1491911889:90347..90865TCONS_00015373-exon-sc0000210-1491911889:90347..90865Clytia hemisphaericaexon
TCONS_00015373-exon-sc0000210-1510915933:90347..90865TCONS_00015373-exon-sc0000210-1510915933:90347..90865Clytia hemisphaericaexon
TCONS_00015373-exon-sc0000210-1575043694:90347..90865TCONS_00015373-exon-sc0000210-1575043694:90347..90865Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015373-proteinTCONS_00015373-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:90347..90865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.503632	0.34759	0.952071	0.923971	6.04189	5.03504	12.0531	8.79216	4.22889	5.71271	3.27669	3.49618	20.3059	14.0435	12.5465	16.7691	3.58181	9.1245	15.2839	23.1427	8.10085	6.01567	3.39346	3.49852	6.47939	7.54063	2.9351	3.80964	28.3904	17.9545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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