TCONS_00015372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015372
Unique NameTCONS_00015372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015372 ID=TCONS_00015372|Name=TCONS_00015372|organism=Clytia hemisphaerica|type=transcript|length=431bp
CAACGGTTGATTTCTTCGTATATTGTTGTGAAACAAACGTTGGAGGTATG
AAGACAGCTTCGTGTAAATCGTTCTTGAAAAGTGAAGATTCACCGTATTC
TCTTTGAAGGAGGAACATAGCAGCTTTGATTGGGTCGGTAAACGTTTGGG
TGTTCCCTAAATTAAATTGTCTGGCTTGACGCTTCGATACAGTTTGGTTG
TTCTTGATAATCTGCCAGTATAACGATTTATTTGGATCACATTTTAAAGG
ATTGATTGGTTTGGGTTGCAACATTAATAATTTCTGCGCGATAGTTTGGA
CACCAATGATACTCGCCATCTTGTTTCAAATGAAACCACTGCTTTTCAAC
GATAACAAGCTGAATTTAACTCCAATTTATCCTTTGACAGAACATCCTAC
ATGAACTAACCTTTATTACAAAACACAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00015372-protein

>TCONS_00015372-protein ID=TCONS_00015372-protein|Name=TCONS_00015372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MASIIGVQTIAQKLLMLQPKPINPLKCDPNKSLYWQIIKNNQTVSKRQAR
QFNLGNTQTFTDPIKAAMFLLQREYGESSLFKNDLHEAVFIPPTFVSQQY
TKKSTV
Run BLAST on NCBI

transcript from alignment at sc0000210:89803..90233

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015372 ID=TCONS_00015372|Name=TCONS_00015372|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0000210:89803..90233 (Clytia hemisphaerica)
GTTTTGTGTTTTGTAATAAAGGTTAGTTCATGTAGGATGTTCTGTCAAAG
GATAAATTGGAGTTAAATTCAGCTTGTTATCGTTGAAAAGCAGTGGTTTC
ATTTGAAACAAGATGGCGAGTATCATTGGTGTCCAAACTATCGCGCAGAA
ATTATTAATGTTGCAACCCAAACCAATCAATCCTTTAAAATGTGATCCAA
ATAAATCGTTATACTGGCAGATTATCAAGAACAACCAAACTGTATCGAAG
CGTCAAGCCAGACAATTTAATTTAGGGAACACCCAAACGTTTACCGACCC
AATCAAAGCTGCTATGTTCCTCCTTCAAAGAGAATACGGTGAATCTTCAC
TTTTCAAGAACGATTTACACGAAGCTGTCTTCATACCTCCAACGTTTGTT
TCACAACAATATACGAAGAAATCAACCGTTG

Coding sequence (CDS) from alignment at sc0000210:89803..90233

>TCONS_00015372 ID=TCONS_00015372|Name=TCONS_00015372|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000210:89803..90233 (Clytia hemisphaerica)
ATGGCGAGTATCATTGGTGTCCAAACTATCGCGCAGAAATTATTAATGTT
GCAACCCAAACCAATCAATCCTTTAAAATGTGATCCAAATAAATCGTTAT
ACTGGCAGATTATCAAGAACAACCAAACTGTATCGAAGCGTCAAGCCAGA
CAATTTAATTTAGGGAACACCCAAACGTTTACCGACCCAATCAAAGCTGC
TATGTTCCTCCTTCAAAGAGAATACGGTGAATCTTCACTTTTCAAGAACG
ATTTACACGAAGCTGTCTTCATACCTCCAACGTTTGTTTCACAACAATAT
ACGAAGAAATCAACCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008595XLOC_008595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015372-proteinTCONS_00015372-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015372-exon-sc0000210-1491911889:89803..90233TCONS_00015372-exon-sc0000210-1491911889:89803..90233Clytia hemisphaericaexon
TCONS_00015372-exon-sc0000210-1510915933:89803..90233TCONS_00015372-exon-sc0000210-1510915933:89803..90233Clytia hemisphaericaexon
TCONS_00015372-exon-sc0000210-1575043694:89803..90233TCONS_00015372-exon-sc0000210-1575043694:89803..90233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:89803..90233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15981	0.15584	1.08567	0.885131	7.32742	4.76842	7.07965	9.91013	2.1547	5.31761	3.30163	1.99244	14.0573	10.9561	6.44357	10.2106	5.06808	8.27831	14.869	19.3789	7.44064	5.33966	3.38739	3.49112	9.09377	7.65658	3.14711	3.38254	17.3437	10.287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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