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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015364 ID=TCONS_00015364|Name=TCONS_00015364|organism=Clytia hemisphaerica|type=transcript|length=4302bpRun BLAST on NCBI protein sequence of TCONS_00015364-protein >TCONS_00015364-protein ID=TCONS_00015364-protein|Name=TCONS_00015364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1149bp MIASQTYNFSHDLDRQSVASVKKILLHPITFKDAQHADEGDQLRTKYKALRun BLAST on NCBI transcript from alignment at sc0000210:314596..380032- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015364 ID=TCONS_00015364|Name=TCONS_00015364|organism=Clytia hemisphaerica|type=transcript|length=65437bp|location=Sequence derived from alignment at sc0000210:314596..380032- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000210:314596..380032- >TCONS_00015364 ID=TCONS_00015364|Name=TCONS_00015364|organism=Clytia hemisphaerica|type=CDS|length=62100bp|location=Sequence derived from alignment at sc0000210:314596..380032- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015364 vs. Swiss-Prot (Human)
Match: UBP36 (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3) HSP 1 Score: 395.201 bits (1014), Expect = 4.969e-116 Identity = 217/488 (44.47%), Postives = 303/488 (62.09%), Query Frame = 2
Query: 290 DLDRQSVASVKKILLHPITFKDAQHA--DEGDQLRTKYKALN------SNYKPG------KMKSANLTNKMNDDLPQPQVVLFPEEKVELHWKESRKIGPGLVNLGNTCFLNSVLQVLTYTPPLLNYILTGYHKKNCCASGFCMQCELTNHFLKIARPHQQMGAIKPTPIIQKLRCIGKNFRFGRQEDAHEFLRFVIEAIQKSEYHGRPKLDKISKETTVANAIFGGFYRSQVKCLQCQHESNTYDPIMDVNLDIKECNSILHAFKKSVFPDRLDGDNKYFCDRCRKKTVAQKRGTIHKAPNVLTLQLKRF-DFSKMFGGKISKDIHFPEDLNIRPYMSNTKLEPVFYKLYAVLVHSGYSCNSGHYYCYVRGSNGIWYEMNDSRVSQVSVKVVLSAQAYILFYVK---AKKTPSNLPRPLSATHSNTSPHQQL----QNKQNLTYG-PQKPLIGPQKPSPMKDVPLNIDQNNKKNANSSAPYGVPVKR 1684
+L + +S KK+LL I F+ A + + + L++KY LN S +K G + S + D +P PQ VLFP E++ L W+ ++G GL NLGNTCFLN+ +Q LTYTPPL NY+L+ H ++C FCM C + NH ++ AIKP I+ L+ I ++FRFG QEDAHEFLR+ I+A+QK+ +G KLD+ ++ TT+ + IFGG+ RS+VKC C+ S+TYDP +DV L+I++ +I+ A + V D L G+N Y C +C+KK A KR TIH+ NVLTL LKRF +FS GGKI+KD+ +PE LNIRPYMS +PV Y LYAVLVHSGYSC++GHYYCYV+ SNG WY+MNDS V +VKVVL+ QAY+LFY++ +KK+P L +S T S++ P + +K+N+ G PL G ++ D K +++ GVP+ R
Sbjct: 23 ELGKLLASSAKKVLLQKIEFEPASKSFSYQLEALKSKYVLLNPKTEGASRHKSGDDPPARRQGSEHTYESCGDGVPAPQKVLFPTERLSLRWERVFRVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAF--ANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKSVSDTYDPYLDVALEIRQAANIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFS---GGKITKDVGYPEFLNIRPYMSQNNGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRIPGSKKSPEGL---ISRTGSSSLPGRPSVIPDHSKKNIGNGIISSPLTGKRQ-----------DSGTMKKPHTTEEIGVPISR 491 The following BLAST results are available for this feature:
BLAST of TCONS_00015364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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