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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015356 ID=TCONS_00015356|Name=TCONS_00015356|organism=Clytia hemisphaerica|type=transcript|length=851bp
NNATAAAACAGCAAAAATACAGCAGTCAGCACTAGGcaaatgaagaactg
aaaaaggtcCATGTGGAAGAACTGAGGCCTTAAATACGCATGAGAGTGAG
GCTGTCCCAAGAGTCCGgatatatatcaaaacaaaccatttgcatctaaa
ctctgatatacaAAACATATATCAGAACCGAAAATCTTGAAAGACTTTTA
AGCTTTACTGCCAAAAATGAGTTCCTTAGTTGGCAAATGTATTATGCAGC
AGTGTTTATCAGCCAAACTGATGGTCAAGCCAGCTGAAGATCAACCAAGG
TGTTGTTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTAC
CCAAAATTGTGAAATCCATACTTGAAGTTCGGCTGTCCTTTTCTGAGGAA
AATCAAAAACGAGTTTCTATACTGGACTTGCCTGGTGACGTCCTGATCGT
CCCTCAaGCCACTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCAATATC
ATAATAATGTTTCTAAGGAGCTTGGTCAACAGTTGTATTCTGATTTCGTT
GCACAGATCAAGgaatcttttgaaaaaaacagaACATCCAAACCGAATGA
TTGTGTTGTGCATAGCGGTACGTATGGTAACCTGCAGGTCTTAAACATGG
AAACGAACGGCCCATACACAACCATTCTcgaattttagtttttttttgta
aatagatTTAATAGTTTTTCTTATGATAGGTCCTTAGCGGAGAagttttt
atgaaaatgtcttatttttatattattagCCACAAATTTACTTACAATTC
AATAAGGGTCAAATTTGTGGACAATGCTTTGTTGGTAGCGTGGAGTTTAA
C Run BLAST on NCBI transcript from alignment at sc0000210:172821..177818- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015356 ID=TCONS_00015356|Name=TCONS_00015356|organism=Clytia hemisphaerica|type=transcript|length=4998bp|location=Sequence derived from alignment at sc0000210:172821..177818- (Clytia hemisphaerica)
NNATAAAACAGCAAAAATACAGCAGTCAGCACTAGGCAAATGAAGAACTG
AAAAAGGTCCATGTGGAAGAACTGAGGCCTTAAATACGCATGAGAGTGAG
GCTGTCCCAAGAGTCCGGATATATATCAAAACAAACCATTTGCATCTAAA
CTCTGATATACAAAACATATATCAGAACCGAAAATCTTGAAAGACTTTTA
AGCTTTACTGCCAAAAATGAGTTCCTTAGTTGGCAAATGTATTATGCAGC
AGTGTTTATCAGCCAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGC
CCTGCTCAATATGTCCAAGTATATAAAATGTTTGTGATCTGAATATTGTA
TTAACTTGTTCATGGTTATATACTTTAATTCATGAAACTCATTTGAAACG
CAAACATAAATTTCAGGTACTTTTCCATCTTGAATTTAACTGATTGTTTC
GTGGACAAAAAGTATAATAATGACGAGGTATTGAAGGGGAAAGAGTTAGA
TAGTTTGTGTATAAAATTACATTCCCCCTAATTGTCATTTAATTCAGATC
AACCAAGGTGTTGTTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGA
TCATTTACCCAAAATTGGTGAGTTTCAAAGAAGTCTCTTCATTTTCAAAA
AATGCCTTTTGCTTGTATTACCACAAAGGAAGAATGTGCTAAAATGTTGG
ATCCAAGTGTACCACAAATGTTCCAGGGCGTCTCAGGAAATTAGACTGCA
AATTCAGGTATTTGAATTCTGGTTGTTAGGATGTGCTGGTTAATCTTTCA
AAAGCTTCTTTTGAGGTCATGAGCTCATGTTAAATGTTAGACTAAAAGGT
TTTCCTCGATTAACCAAATCAATGCCTTACTCATTTTGTATAATCTAGCT
TTCATCTTGAGTAATGAGAGTAGGCCTACCCCCCCCCCCCCAAAACTTTT
TTCTCAAATTTTAAAAGACGGTTTTTTTTTTTTTTTTAAAAAGAGGGTTT
CTCTGGGGAAAAGGGGGGGGGGCCCCCCCCCCCCCCAAGATATTTTCTCA
AAATATTAAAGATATGTATCATTTCTTTATTATAGTGAAATCCATACTTG
AAGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTG
GACTTGCCTGGTGACGTCCTGATCGTCCCTCAAGTATTCATTTTATTTTA
TGATTCTTTCCATTTGGAATTTGGGCTATCTTTGTGCTTTAGAGCAAAGC
AGAGAACAAAGAGCTGAAATATACAATCTTTATGGCCCAAATAAAGGATT
TTGCACAATGTTTTTTGATTCTCATATCTTGAGGGTATCTAAATTTTTCA
AATATTCTAAAACCACTGACCTTTGGGGAACAAACTATGACACATACTTT
AAAATTTTTAAGCCTGAGGTATGGTTTTGACAGTTCACTTTTCACGCTGC
CTATTTTAATTGTATAGACTATAGCCTATTGTAATTGTGAGATAGGCAGA
AGGTTTGCTGTCTAAAGTCAATGTATAGCATTCTTTCAACGTCAATATGT
AATGTAATCTCTTTCAATCTTTTCCAGGGAAGATTTTAACTGCCAACTTT
CTGGCTACTTTAACAATAGAAGAAACAGTAGAAATTCAGCCGTCTTAAAA
CCAGAGCTAAACCTCCCTTGCTGAAACTAAAAGCTACCATTCAGTAATTA
ACGATTTCTATAATTTCAGGCCACTCTCGGTGGAAGAATGAAAGGCAAAG
CCATTCAGTAAGAACAAATACATTATAAACCATCATTCTGTGAAAATTTT
TCAACAAGACCCACTGTCCTTTATAAACCATGGGTCAAGCTATATCCCCC
ATTGATCGGAGTTTTTTCCAAAGTTCGACCGCGCTATTATCCCAAATCAA
AATAATAAAGGATAAGTAGATCGAGCTATACCATACATTATACCTCTATT
GAGTAAGTGCTACCATTAGGGTACCACGTTCAAAAAAACTCTGAGCAAAA
GGTTCTGCTTGGCCGGGATTGAGAAAATACCTCTAGGATTTATATAAAGC
TCAGTGACCAGATCAAAAGAATTAGAGCCAAATCTACTTTTCATAATTTG
ACCATTTTCACCCGTTTGCAAAGTATCNAACTAATGCCAAATCTACTTTT
CATAATTTGACCATTTTCACCCGTTTGGAAAGTATTTATTATTTATTTAT
CATGTTGGAAAAAAAACTTTTATACAAACGATTTATATACTCTCCATAGT
TCTAAAACCACAATTTTTCATTTCTTCTTCTTTTTTATATCCTACCTTTT
TGTTTAGATATCATAATAATGTTTCTAAGGAGCTTGGTCAACAGTTGTAT
TCTGATTTCGTTGCACAGATCAAGGTTAGTGCTTTAGTGAGAATTGCAAT
TTTTATCTTGCTCAAAAAATGGTGTTTCATGACAATATATTACAATATAT
ATAATATAAACTTGAACTTTGATGGGTCAAAAGCTATACTGAATAATTAT
TTGAAGGGGTATACCCTCTATGAAACATCCGTAATGACCCATCAAAATTT
AAGTTGATTCTTTCAAAACAGGGTAAATTATTTCTGGCACGCCTGATAGG
ATAAAATGACGTCGAATTTCTTGAAAAGCTCACGGAATCAGACCAAAGCT
CCTAAAGTTATAGGTGTAAATACGTTAACTCTTATGAATTTTTTTATCAT
TTTTTATCACCATTGCAAGTCTTGAAATAAAGATCTGACATTTTCTTTGA
CCGACTTGAAATCGAGCCATGCCACTGCCATTAAATATTGCATCAATTGT
CTGAAATGGAAGCATAATATAATATGTATATTATATATCTTTCTATAATT
TTTAACCTTCAAGATTATATAGGGCTAAAAGATTGTTGTGCAAAAAATCC
TATGTCTTAACATTTATACTTTTCTTTTTACCAGGAATCTTTTGAAAAAA
ACAGAACATCCAAACCGAATGATTGTGTTGTGCATAGCGGTAACTGCTTG
TCTTTCTTTAAAGGGATTATCAGATGATTTGAGATAATTAGGCTATTGTC
CTTAATAAAACCTATAACTATTTTTTCCTAACTTTTTTTCCGAAGTCTGC
ATATCACAGTTTAAATTTTCTAAAAATGGGTTCATATAACTGAAAATAGA
AAATGGTTAGGCCTACTTCTTTTTCGAAATTCTTTGGATTTTTCTACTAC
CGTACAAAAAAATCCAAGAAAAACTCGAAAACTTGCGAACGAAAAATAAA
TTCCGAGTTAGCTAACTCGAAAAAAGGTTTTGTGAAAAAGAAATTCGAGT
TAGCTAACTCGAAAAGGTTTTTACGAAAAATAAAATTCGAGTTATTTTAA
CTCGAAAAATATTTTTTGAAAATAAAAAATCGAGTTAGAGTCGAGTGACG
TCAGAATTTGCACTTTCATGACGTCATAATTTAGCTAACTCGAAAATTCC
TAACTCGAAAATGGCTAACTCCAAGTTTTCTAACTCGAAGATTCCGGGCC
TCAAAAATTTTCAGCTTTTGCTCAGAAATCCCACATGTCTAATATCTCAA
ACCATAGTCCGTATAAAAAACTCTGGTTTGGAAGCCTTTTGTTTTTTTCC
ATTGTTTCTTACTTGGACTTGTGCTTGAGAAATTAGTTTGTTTTGCTCAC
TTTTTGATCATGTGATTAAATCCTAAACCAATCACATGAGGAATACTTGG
CAACGTGATCAAAAACTGAGCAAATCGATTTTTATCTTTTGATATTAACA
AAGGAAAAGCTAACAAAAAGTTAAAACAATAAGCTTCCAGACCAGTGTTT
TTTATAAGGACTATGCTCAAACCATCTGATTAATCCCTTTAACTCAAAAT
GGAGTAATTTATTAGAATATTTGATTTAAACCTTGCTTGTCATTCTCTAT
CATTTTTCATTCAAAGTTTTTTTCTCACAACATTCTGTCTTAATACGATC
TAGTCCTTTTACATCAGCTATCATCAATTTTATATGATCGACGACAATTC
AGTCACAAAACCGTGGTATGCCACTTTTTAGGTTCGATCATTATACATAT
ATCAACCTTTAAAACGCGAGGAGACTGGGTTGAAGTTTACCAGGAAGTAA
TGTCGTCGAAATGCCTGAAGTCACATAGTGACCTCATAGTCCTCCCCCTT
TTAAAAGCCTGCTAGGACACTACTATGAGTCGGTGTATTGAGATCCTTAC
TACCGACAAAGAACTTTGACATGATTTTATGTAAATTCATTACCAATACT
TGATAATAGCGAAAAATACTAGAAAAGGATTTTAAACCTTTCTTAAGCAA
GAAAAAGTGAAATGTTAAGATTTGCGCCGGCGTTTGTGTGAAAACCACGC
AGGTTACCCGTTTTGGATTGAAAATAAGTGGCTTCATTTCCCATCCAAAA
ATCTTCTGGCTCTAAACTTATGGTTGTATAGGTGTATTCATGCAGCCATA
CAATCATTTTTTCAAAATGACCAGTTCTACATACATGGAGACATGAAGAA
AGGAATAAATTTCGTCCCCGGTAGGAAAGTACCCTGGAAATTGATTCATA
TTTCATCCACACTCAAAAATAAATGTTTAAAAATTGCACTCCAGAAGCAT
CCCCACTGGATTTTTTAACCTTTGATTAATATAATTTTTATCCCCATTGG
GATTTCAGTAGGAATTTTTATCGCCACTGAGGAAAAAGGTTCCAGCGGGG
CTGTGAGACAGGGGTGTTAAAAGCAAAGTGCCACCCTTTTTAAATAAATA
ACGTTTATTTTTAGGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAA
CGAACGGCCCATACACAACCATTCTCGAATTTTAGTTTTTTTTTGTAAAT
AGATTTAATAGTTTTTCTTATGATAGGTCCTTAGCGGAGAAGTTTTTATG
AAAATGTCTTATTTTTATATTATTAGCCACAAATTTACTTACAATTCAAT
AAGGGTCAAATTTGTGGACAATGCTTTGTTGGTAGCGTGGAGTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015356-exon-sc0000210-1575043694:177530..177818 | TCONS_00015356-exon-sc0000210-1575043694:177530..177818 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:177202..177271 | TCONS_00015356-exon-sc0000210-1575043694:177202..177271 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:176636..176733 | TCONS_00015356-exon-sc0000210-1575043694:176636..176733 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:176062..176099 | TCONS_00015356-exon-sc0000210-1575043694:176062..176099 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:175445..175511 | TCONS_00015356-exon-sc0000210-1575043694:175445..175511 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:174830..174884 | TCONS_00015356-exon-sc0000210-1575043694:174830..174884 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1575043694:172821..173054 | TCONS_00015356-exon-sc0000210-1575043694:172821..173054 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:177530..177818 | TCONS_00015356-exon-sc0000210-1510915933:177530..177818 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:177202..177271 | TCONS_00015356-exon-sc0000210-1510915933:177202..177271 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:176636..176733 | TCONS_00015356-exon-sc0000210-1510915933:176636..176733 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:176062..176099 | TCONS_00015356-exon-sc0000210-1510915933:176062..176099 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:175445..175511 | TCONS_00015356-exon-sc0000210-1510915933:175445..175511 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:174830..174884 | TCONS_00015356-exon-sc0000210-1510915933:174830..174884 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1510915933:172821..173054 | TCONS_00015356-exon-sc0000210-1510915933:172821..173054 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:177530..177818 | TCONS_00015356-exon-sc0000210-1491911889:177530..177818 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:177202..177271 | TCONS_00015356-exon-sc0000210-1491911889:177202..177271 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:176636..176733 | TCONS_00015356-exon-sc0000210-1491911889:176636..176733 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:176062..176099 | TCONS_00015356-exon-sc0000210-1491911889:176062..176099 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:175445..175511 | TCONS_00015356-exon-sc0000210-1491911889:175445..175511 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:174830..174884 | TCONS_00015356-exon-sc0000210-1491911889:174830..174884 | Clytia hemisphaerica | exon |
| TCONS_00015356-exon-sc0000210-1491911889:172821..173054 | TCONS_00015356-exon-sc0000210-1491911889:172821..173054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000210 | supercontig | sc0000210:172821..177818 - |
Blast
BLAST of TCONS_00015356 vs. Swiss-Prot (Human)
Match: DTD2 (Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo sapiens GN=DTD2 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.201e-39 Identity = 66/136 (48.53%), Postives = 95/136 (69.85%), Query Frame = 2
Query: 275 SSQLKINQGVVVFICFLKDAAIDHLPKIVKSILEVRLSFSEENQKRVSILDLPGDVLIVPQATLGGRMKGKAIQYHNNVSKELGQQLYSDFVAQIKESFEKNRTSKPNDCVVHSGTYGNLQVLNMETNGPYTTILE 682
+ +++ +G+V+++CF K A + LPK+V ++L V+LS EN K VSILDLPG++LI+PQATLGGR+KG+ +QYH+N KE G +LYS FV ++ N VV GTYGN QVL ++TNGP+T ++E
Sbjct: 33 AQWVEVQRGLVIYVCFFKGADKELLPKMVNTLLNVKLS-ETENGKHVSILDLPGNILIIPQATLGGRLKGRNMQYHSNSGKEEGFELYSQFVTLCEKEVAANSKCAEARVVVEHGTYGNRQVLKLDTNGPFTHLIE 167
The following BLAST results are available for this feature:
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