TCONS_00015354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015354
Unique NameTCONS_00015354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015354 ID=TCONS_00015354|Name=TCONS_00015354|organism=Clytia hemisphaerica|type=transcript|length=598bp
CATGAAACTCATTTGAAACGCAAACATAAATTTCAGATCAACCAAGGTGT
TGTTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCA
AAATTGTGAAATCCATACTTGAAGTTCGGCTGTCCTTTTCTGAGGAAAAT
CAAAAACGAGTTTCTATACTGGACTTGCCTGGTGACGTCCTGATCGTCCC
TCAaGCCACTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCAATATCATA
ATAATGTTTCTAAGGAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCA
CAGATCAAGgaatcttttgaaaaaaacagaACATCCAAACCGAATGATTG
TGTTGTGCATAGCGGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAA
CGAACGGCCCATACACAACCATTCTcgaattttagtttttttttgtaaat
agatTTAATAGTTTTTCTTATGATAGGTCCTTAGCGGAGAagtttttatg
aaaatgtcttatttttatattattagCCACAAATTTACTTACAATTCAAT
AAGGGTCAAATTTGTGGACAATGCTTTGTTGGTAGCGTGGAGTTTAAC
Run BLAST on NCBI

transcript from alignment at sc0000210:172821..177438-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015354 ID=TCONS_00015354|Name=TCONS_00015354|organism=Clytia hemisphaerica|type=transcript|length=4618bp|location=Sequence derived from alignment at sc0000210:172821..177438- (Clytia hemisphaerica)
CATGAAACTCATTTGAAACGCAAACATAAATTTCAGGTACTTTTCCATCT
TGAATTTAACTGATTGTTTCGTGGACAAAAAGTATAATAATGACGAGGTA
TTGAAGGGGAAAGAGTTAGATAGTTTGTGTATAAAATTACATTCCCCCTA
ATTGTCATTTAATTCAGATCAACCAAGGTGTTGTTGTGTTCATTTGTTTT
CTAAAAGATGCAGCAATCGATCATTTACCCAAAATTGGTGAGTTTCAAAG
AAGTCTCTTCATTTTCAAAAAATGCCTTTTGCTTGTATTACCACAAAGGA
AGAATGTGCTAAAATGTTGGATCCAAGTGTACCACAAATGTTCCAGGGCG
TCTCAGGAAATTAGACTGCAAATTCAGGTATTTGAATTCTGGTTGTTAGG
ATGTGCTGGTTAATCTTTCAAAAGCTTCTTTTGAGGTCATGAGCTCATGT
TAAATGTTAGACTAAAAGGTTTTCCTCGATTAACCAAATCAATGCCTTAC
TCATTTTGTATAATCTAGCTTTCATCTTGAGTAATGAGAGTAGGCCTACC
CCCCCCCCCCCAAAACTTTTTTCTCAAATTTTAAAAGACGGTTTTTTTTT
TTTTTTTAAAAAGAGGGTTTCTCTGGGGAAAAGGGGGGGGGGCCCCCCCC
CCCCCCAAGATATTTTCTCAAAATATTAAAGATATGTATCATTTCTTTAT
TATAGTGAAATCCATACTTGAAGTTCGGCTGTCCTTTTCTGAGGAAAATC
AAAAACGAGTTTCTATACTGGACTTGCCTGGTGACGTCCTGATCGTCCCT
CAAGTATTCATTTTATTTTATGATTCTTTCCATTTGGAATTTGGGCTATC
TTTGTGCTTTAGAGCAAAGCAGAGAACAAAGAGCTGAAATATACAATCTT
TATGGCCCAAATAAAGGATTTTGCACAATGTTTTTTGATTCTCATATCTT
GAGGGTATCTAAATTTTTCAAATATTCTAAAACCACTGACCTTTGGGGAA
CAAACTATGACACATACTTTAAAATTTTTAAGCCTGAGGTATGGTTTTGA
CAGTTCACTTTTCACGCTGCCTATTTTAATTGTATAGACTATAGCCTATT
GTAATTGTGAGATAGGCAGAAGGTTTGCTGTCTAAAGTCAATGTATAGCA
TTCTTTCAACGTCAATATGTAATGTAATCTCTTTCAATCTTTTCCAGGGA
AGATTTTAACTGCCAACTTTCTGGCTACTTTAACAATAGAAGAAACAGTA
GAAATTCAGCCGTCTTAAAACCAGAGCTAAACCTCCCTTGCTGAAACTAA
AAGCTACCATTCAGTAATTAACGATTTCTATAATTTCAGGCCACTCTCGG
TGGAAGAATGAAAGGCAAAGCCATTCAGTAAGAACAAATACATTATAAAC
CATCATTCTGTGAAAATTTTTCAACAAGACCCACTGTCCTTTATAAACCA
TGGGTCAAGCTATATCCCCCATTGATCGGAGTTTTTTCCAAAGTTCGACC
GCGCTATTATCCCAAATCAAAATAATAAAGGATAAGTAGATCGAGCTATA
CCATACATTATACCTCTATTGAGTAAGTGCTACCATTAGGGTACCACGTT
CAAAAAAACTCTGAGCAAAAGGTTCTGCTTGGCCGGGATTGAGAAAATAC
CTCTAGGATTTATATAAAGCTCAGTGACCAGATCAAAAGAATTAGAGCCA
AATCTACTTTTCATAATTTGACCATTTTCACCCGTTTGCAAAGTATCNAA
CTAATGCCAAATCTACTTTTCATAATTTGACCATTTTCACCCGTTTGGAA
AGTATTTATTATTTATTTATCATGTTGGAAAAAAAACTTTTATACAAACG
ATTTATATACTCTCCATAGTTCTAAAACCACAATTTTTCATTTCTTCTTC
TTTTTTATATCCTACCTTTTTGTTTAGATATCATAATAATGTTTCTAAGG
AGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGTTAGT
GCTTTAGTGAGAATTGCAATTTTTATCTTGCTCAAAAAATGGTGTTTCAT
GACAATATATTACAATATATATAATATAAACTTGAACTTTGATGGGTCAA
AAGCTATACTGAATAATTATTTGAAGGGGTATACCCTCTATGAAACATCC
GTAATGACCCATCAAAATTTAAGTTGATTCTTTCAAAACAGGGTAAATTA
TTTCTGGCACGCCTGATAGGATAAAATGACGTCGAATTTCTTGAAAAGCT
CACGGAATCAGACCAAAGCTCCTAAAGTTATAGGTGTAAATACGTTAACT
CTTATGAATTTTTTTATCATTTTTTATCACCATTGCAAGTCTTGAAATAA
AGATCTGACATTTTCTTTGACCGACTTGAAATCGAGCCATGCCACTGCCA
TTAAATATTGCATCAATTGTCTGAAATGGAAGCATAATATAATATGTATA
TTATATATCTTTCTATAATTTTTAACCTTCAAGATTATATAGGGCTAAAA
GATTGTTGTGCAAAAAATCCTATGTCTTAACATTTATACTTTTCTTTTTA
CCAGGAATCTTTTGAAAAAAACAGAACATCCAAACCGAATGATTGTGTTG
TGCATAGCGGTAACTGCTTGTCTTTCTTTAAAGGGATTATCAGATGATTT
GAGATAATTAGGCTATTGTCCTTAATAAAACCTATAACTATTTTTTCCTA
ACTTTTTTTCCGAAGTCTGCATATCACAGTTTAAATTTTCTAAAAATGGG
TTCATATAACTGAAAATAGAAAATGGTTAGGCCTACTTCTTTTTCGAAAT
TCTTTGGATTTTTCTACTACCGTACAAAAAAATCCAAGAAAAACTCGAAA
ACTTGCGAACGAAAAATAAATTCCGAGTTAGCTAACTCGAAAAAAGGTTT
TGTGAAAAAGAAATTCGAGTTAGCTAACTCGAAAAGGTTTTTACGAAAAA
TAAAATTCGAGTTATTTTAACTCGAAAAATATTTTTTGAAAATAAAAAAT
CGAGTTAGAGTCGAGTGACGTCAGAATTTGCACTTTCATGACGTCATAAT
TTAGCTAACTCGAAAATTCCTAACTCGAAAATGGCTAACTCCAAGTTTTC
TAACTCGAAGATTCCGGGCCTCAAAAATTTTCAGCTTTTGCTCAGAAATC
CCACATGTCTAATATCTCAAACCATAGTCCGTATAAAAAACTCTGGTTTG
GAAGCCTTTTGTTTTTTTCCATTGTTTCTTACTTGGACTTGTGCTTGAGA
AATTAGTTTGTTTTGCTCACTTTTTGATCATGTGATTAAATCCTAAACCA
ATCACATGAGGAATACTTGGCAACGTGATCAAAAACTGAGCAAATCGATT
TTTATCTTTTGATATTAACAAAGGAAAAGCTAACAAAAAGTTAAAACAAT
AAGCTTCCAGACCAGTGTTTTTTATAAGGACTATGCTCAAACCATCTGAT
TAATCCCTTTAACTCAAAATGGAGTAATTTATTAGAATATTTGATTTAAA
CCTTGCTTGTCATTCTCTATCATTTTTCATTCAAAGTTTTTTTCTCACAA
CATTCTGTCTTAATACGATCTAGTCCTTTTACATCAGCTATCATCAATTT
TATATGATCGACGACAATTCAGTCACAAAACCGTGGTATGCCACTTTTTA
GGTTCGATCATTATACATATATCAACCTTTAAAACGCGAGGAGACTGGGT
TGAAGTTTACCAGGAAGTAATGTCGTCGAAATGCCTGAAGTCACATAGTG
ACCTCATAGTCCTCCCCCTTTTAAAAGCCTGCTAGGACACTACTATGAGT
CGGTGTATTGAGATCCTTACTACCGACAAAGAACTTTGACATGATTTTAT
GTAAATTCATTACCAATACTTGATAATAGCGAAAAATACTAGAAAAGGAT
TTTAAACCTTTCTTAAGCAAGAAAAAGTGAAATGTTAAGATTTGCGCCGG
CGTTTGTGTGAAAACCACGCAGGTTACCCGTTTTGGATTGAAAATAAGTG
GCTTCATTTCCCATCCAAAAATCTTCTGGCTCTAAACTTATGGTTGTATA
GGTGTATTCATGCAGCCATACAATCATTTTTTCAAAATGACCAGTTCTAC
ATACATGGAGACATGAAGAAAGGAATAAATTTCGTCCCCGGTAGGAAAGT
ACCCTGGAAATTGATTCATATTTCATCCACACTCAAAAATAAATGTTTAA
AAATTGCACTCCAGAAGCATCCCCACTGGATTTTTTAACCTTTGATTAAT
ATAATTTTTATCCCCATTGGGATTTCAGTAGGAATTTTTATCGCCACTGA
GGAAAAAGGTTCCAGCGGGGCTGTGAGACAGGGGTGTTAAAAGCAAAGTG
CCACCCTTTTTAAATAAATAACGTTTATTTTTAGGTACGTATGGTAACCT
GCAGGTCTTAAACATGGAAACGAACGGCCCATACACAACCATTCTCGAAT
TTTAGTTTTTTTTTGTAAATAGATTTAATAGTTTTTCTTATGATAGGTCC
TTAGCGGAGAAGTTTTTATGAAAATGTCTTATTTTTATATTATTAGCCAC
AAATTTACTTACAATTCAATAAGGGTCAAATTTGTGGACAATGCTTTGTT
GGTAGCGTGGAGTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008583XLOC_008583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015354-exon-sc0000210-1575043694:177403..177438TCONS_00015354-exon-sc0000210-1575043694:177403..177438Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:177202..177271TCONS_00015354-exon-sc0000210-1575043694:177202..177271Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:176636..176733TCONS_00015354-exon-sc0000210-1575043694:176636..176733Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:176062..176099TCONS_00015354-exon-sc0000210-1575043694:176062..176099Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:175445..175511TCONS_00015354-exon-sc0000210-1575043694:175445..175511Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:174830..174884TCONS_00015354-exon-sc0000210-1575043694:174830..174884Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1575043694:172821..173054TCONS_00015354-exon-sc0000210-1575043694:172821..173054Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:177403..177438TCONS_00015354-exon-sc0000210-1510915933:177403..177438Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:177202..177271TCONS_00015354-exon-sc0000210-1510915933:177202..177271Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:176636..176733TCONS_00015354-exon-sc0000210-1510915933:176636..176733Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:176062..176099TCONS_00015354-exon-sc0000210-1510915933:176062..176099Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:175445..175511TCONS_00015354-exon-sc0000210-1510915933:175445..175511Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:174830..174884TCONS_00015354-exon-sc0000210-1510915933:174830..174884Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1510915933:172821..173054TCONS_00015354-exon-sc0000210-1510915933:172821..173054Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:177403..177438TCONS_00015354-exon-sc0000210-1491911889:177403..177438Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:177202..177271TCONS_00015354-exon-sc0000210-1491911889:177202..177271Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:176636..176733TCONS_00015354-exon-sc0000210-1491911889:176636..176733Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:176062..176099TCONS_00015354-exon-sc0000210-1491911889:176062..176099Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:175445..175511TCONS_00015354-exon-sc0000210-1491911889:175445..175511Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:174830..174884TCONS_00015354-exon-sc0000210-1491911889:174830..174884Clytia hemisphaericaexon
TCONS_00015354-exon-sc0000210-1491911889:172821..173054TCONS_00015354-exon-sc0000210-1491911889:172821..173054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:172821..177438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.12001	3.19303	3.87381	4.64593	9.83559e-08	0	0.240435	0	3.14218	0.28225	3.65777	0.537231	0.591185	1.16372	0.793766	2.98558	5.67744	3.95079	0	1.52466	1.23257	0	0.505211	0	0	0	2.40065	2.75567	2.74	0.581433
Blast
[Close]
BLAST of TCONS_00015354 vs. Swiss-Prot (Human)
Match: DTD2 (Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo sapiens GN=DTD2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.436e-40
Identity = 66/132 (50.00%), Postives = 93/132 (70.45%), Query Frame = 1 
Query:   34 QINQGVVVFICFLKDAAIDHLPKIVKSILEVRLSFSEENQKRVSILDLPGDVLIVPQATLGGRMKGKAIQYHNNVSKELGQQLYSDFVAQIKESFEKNRTSKPNDCVVHSGTYGNLQVLNMETNGPYTTILE 429
            ++ +G+V+++CF K A  + LPK+V ++L V+LS   EN K VSILDLPG++LI+PQATLGGR+KG+ +QYH+N  KE G +LYS FV   ++    N        VV  GTYGN QVL ++TNGP+T ++E
Sbjct:   37 EVQRGLVIYVCFFKGADKELLPKMVNTLLNVKLS-ETENGKHVSILDLPGNILIIPQATLGGRLKGRNMQYHSNSGKEEGFELYSQFVTLCEKEVAANSKCAEARVVVEHGTYGNRQVLKLDTNGPFTHLIE 167
The following BLAST results are available for this feature:
BLAST of TCONS_00015354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTD21.436e-4050.00Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo s... [more]
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