|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015343 ID=TCONS_00015343|Name=TCONS_00015343|organism=Clytia hemisphaerica|type=transcript|length=3234bpRun BLAST on NCBI protein sequence of TCONS_00015343-protein >TCONS_00015343-protein ID=TCONS_00015343-protein|Name=TCONS_00015343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1041bp MATMSMKSLLHSDDESDEIAQPITPTTHPPSVTVSGARGSALKSMFSKGTRun BLAST on NCBI transcript from alignment at sc0000210:83626..109691- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015343 ID=TCONS_00015343|Name=TCONS_00015343|organism=Clytia hemisphaerica|type=transcript|length=26066bp|location=Sequence derived from alignment at sc0000210:83626..109691- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000210:83626..109691- >TCONS_00015343 ID=TCONS_00015343|Name=TCONS_00015343|organism=Clytia hemisphaerica|type=CDS|length=31260bp|location=Sequence derived from alignment at sc0000210:83626..109691- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015343 vs. Swiss-Prot (Human)
Match: TEX2 (Testis-expressed protein 2 OS=Homo sapiens GN=TEX2 PE=1 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 4.346e-55 Identity = 157/553 (28.39%), Postives = 247/553 (44.67%), Query Frame = 1
Query: 1681 LNRCLLYLKPDDLPIRRIWNKKYPMKLCIPQTA--LVKKQINSTLEEISLQMNDILQNDFAVXXXXXXXXXXCLKSGTEDEEIYLFSTTGREKEDLFYRMQLCIKA------------------------------LKHQVTFDELKENLVSKSPAQ-------------SYPHYMIDLITESERVMQRN---------IKGKKMEPHL--------AWLNIFIGRAFWDFWHESYWIDKLHQKIQTRLTKLNTPPFITSIKLKELNSGHNVPIIHKGSVPTLDEYGVWTDLQITYKGYFTLTLETQLNVDYYVGLVSSIVKQKAGTDPKYHAQLSKLTKLSELQHDEEDHQTLPDGRGNQNAPHDQSILDDSLEEEAVLMHDVLHEAYLNDMDSQDSTDEPDETDGLDPFMSDPRTKAFLESNAGKKVVNLVGWLAKSKIAKKVAETEFAKKAYERAYEKFRKMPIILRVDIQNVKGNLAINLPPPPSNRLWFGFRNQPVIFISATPKVGEKQVRLTYLTNWIERKLKEEFKKYLVLPSMQDISIKLMDSQL 3153
L+ +YL P L +RIWNKKYP+ + + Q + K Q + E + + + D +E +S D+ +YLF TGREKE+ F R L K L H + + + P Q Y YM + + R QR+ GKK+ AW+N +GR FWDF E YW D + +KIQ +L+K+ P F+ + L EL+ G VP I + P +D G+W DL+++Y G F +TLET++N+ K G +P L + K+ E I + A + D E+ +D D P+ + G + P + ++ + K++ V + KSK +K ETEF KK E + P++L V++Q +G LA+N+PPPP++R+W+GFR P + + A PK+GE++V L ++T+WIE+KL++EF+K V+P+M D+ I +M S +
Sbjct: 611 LSDSKIYLVPKTLARKRIWNKKYPICIELGQQDDFMSKAQTDKETSE------EKPPAEGSEDPKKPPRPQEGTRSSQRDQILYLFGRTGREKEEWFRRFILASKLKSEIKKSSGVSGGKPGLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKMLLDYSVYMGRCVPQESRSPQRSPLQSAESSPTAGKKLPEVPPSEEEEQEAWVNALLGRIFWDFLGEKYWSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLWIDLEMSYNGSFLMTLETKMNL------------TKLGKEP-----LVEALKVGE-------------------------IGKEGCRPRAFCLADSDEESSSAGSSEED--DAPEPSGGDKQLL--PGAEGYVGGHRTSKIMRFVDKITKSKYFQKATETEFIKKKIE----EVSNTPLLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKPPHVELKARPKLGEREVTLVHVTDWIEKKLEQEFQKVFVMPNMDDVYITIMHSAM 1107 The following BLAST results are available for this feature:
BLAST of TCONS_00015343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.