TCONS_00015328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015328
Unique NameTCONS_00015328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015328 ID=TCONS_00015328|Name=TCONS_00015328|organism=Clytia hemisphaerica|type=transcript|length=4141bp
CTTTGTCACGCGATAAAGTGACTCTTTTTAAATGGTATAGTGACTTTGCA
GGCAGGCAAGAAACATTCAGAAAACGCAGAGAAAATCTTGGTTCGCTTTA
CAACAAAAAAAATGACGAATTGTTGTTCCTCCCTTTGGAGAGGTTGGGTA
CGAATTTGTTCTGCCATTAATGGCTTTTTCGAACGTTCTTTCGTTAAATG
GAGTGGTATTGTGTTCGATCACCCATGGAAAGTGATCCTAAGTGGTTTAT
TAATTGCTCTTGGGCTCATGGCTGGTTTCGCCAGATTCAATCCTCAAACA
CAAACTGAACGATTATTCTTTCCCGAACACAGTCGAAGTCGCGATGATTT
AGAGCGCGCGGAGAAAactttcccgtcaaaatttaaACCGGATCAATTTT
TCATCACAATGGCGGATGGTGTATCGTCTGTGTTGAACAGTAAAGCCTTG
AAATTAGGTTTAAAATATCATAACCGGATCATGAATGAAACTGGTATCGA
ACAAATATGTTTGGAATCTAACAAATCTTTAACAGGTGTACCATGTGTTT
TCCTGGACCCTTTATTCGTGTTCAGTTACAACGAATCATCAATCACAGAT
GCGTCTATTCAACCCATTCTCACAAACGCTCTTCGAAACCGGAAAATTAT
TTTCCCGAACGGGATAACAGCGGAAAGAAATTTCCCATCCATCTTCGGGC
GATATGAGTATGATAACATTACTCAAAGAATCTCAGCCACAGCTTTAAGG
TTCATGTATTTTAACAAATTCCCTGAAACTGATTCCACACATAAATTAAC
GTCAGacattcagaaaaaaatgatcGATATTTTGTTAGATGCGGGAGTTC
CGGAGGCTGAAAGAAACGGCATGAAACTATACTTGTTGACAGGTCGAAGT
ACGGACGATGGGATTTCTGAAAGCTCCGGTGGCGACATCTCATTGGTTGC
TGTCTCGATTACCCTGATGTGTACTTTCGCAACTGTTGTTCTTTTTCGTC
TGAGAAATCGAGTCAATGGGCACGTCACAGTGGGATTTGCAGGTATTGGA
TGCATCGCACTTGGGATTGGCTCTGGTTTCGGAATGGTCATGTTGAGTGG
CCAGTACTTCGTGGCTTTCGTTGGAACGCTTCCTTTCCTCGTCCTTGGTG
TGGGCATTGATGATATGTTTATCATTCTGGATGCACTGGACAGCCTACCA
TCTGACTTCACCGGTAAAAATCGTTTACAAAAGACCATGGCTAAAGTTGG
TGCGTCAGTAACCATGACTACAGTGACTGACGTCATCGCTTTTGCTATCT
CCTCCAGCACTGATTTTCCCGCCATTCGTTATTTCTGCATGTATGCACTA
ACAAGCATCCTTTTCGCGTACCTGCTTATAATGACTGTCTTTTTAGCAGC
TTTGGCGCTTGATATTAAAAGGATTGAGGTTGGTAATTGGGATTGGTTTT
GCTGCAAGAAACAAAAAGATAACAATCCATGGAGTGAAGAAGATATGAAC
ACATTATCAAAAACTGTTATGAAGAAATGGGCggaatttttaatgaaaac
acCCGTGCGTATCGTAGTGGTTTTTTTATCGCTCGTTTTGTTAGCGGCAG
GTATCTACGGGACCACACAATTGGCGGAAAAATTTGATATCAGGCAGCTT
GCACCTGATGGGTCGTATTTCATTGATTATTTAGATAACGAGCGAATGCA
TTATCCAGTTGGATTTCAAGTCAGTATTATAAACGATGACGAGAATTTTG
ATTATACAAACCCCCGTCTTCAAGGGGAATATAATTATTTATCCAACATA
TGCAAAGAAAATTCTTATATGAAGAAAACTACTGTGAACTGGTTGCAAGC
ATTTTTAGAATCTAATGAATATAAGAGTAAcccaaatatgacattttaTC
AACGTCTcggtttgtttttaaaagaatttccgGAATACGGACGCGACATT
AAATGGCATACGGAAAACGAACAAAGAATCCGGGCATCCAAAATACAATG
TCAAGATTTAGACACTGATTCATGGGACTTCCGTAAGAAAGCCATGTTGT
CTCTCCGCGATGAGTTCGATTCGAAATCGAACATATCGAATAGTACTTTT
CCAATTTCGTTTAATTATTTTTACCGGGAGCAAATGGTTTCTGTTCCCTC
CGAAACTATGATGAATTTGGTGTTGTGTGCTATTGCAATTCTGATCATTA
CCACACCTTATCTGGTTCACCCTCTTGTCATCTTAATGGTTTTCGGAGGC
TTCGTTGCTTTGGTGTTCGAACTTTTCGGATTGATGGTCATTTGGGATGT
GGCTTTGAATTCCATCTCAATGATCACCTCCATAATGGCTATTGGATTTG
CCGTCGATTATTCCGCCCACGTTGCGCATGCGTATTTGCTAGTTGAAGGC
GATACACCAGAACAACGCATGATCAACGCCATCAGTTCTATTGGTGCAAG
TGTCTTTATGGGAGGTTTCACAACCTTCCTTGGTATCTTAGTGCTCATTT
TCGGACAGTCCGAAATTTTCCggattttcttcaaaatggtTTTCGGAATC
GTCGTTTTGGGATTGTTAAATGGATTGCTCTTCCTTCCTGTCTATCTATC
ATTGTTTGTTCGAAACAAGGTAGATATTCGCCATACTTCAAACTACAATC
AAGATGAACGCCTGCCGCCCTCGGGTGGTGAAAAAAGACCTTCAAAGAAG
ATGAAAGAAATGAACAATAAAGTaggcgatgacgtcatcgaaaatcCTCA
TTCACCTGAATTTAAACCTGTAAATGGTTCAATCAAAAGTAACGATTTGG
TGTAACAATGCACGAACTATGGGTTTGAAAGAATCCTTAAATTTCAGTTT
CCCACATTACTGAAGGAGCTGACTTCACTTTTCATATACTGCATGTGTTC
TTTTTTCATAAGCAAGtgtccctatatcaggctcgcatcacattatgctt
agcattttTGGTACCAAAagctgagcctgcatatgcttataaacgttatg
tttatagaaaaaaaaatttatatagcTATGTAAAGATTTTTCTAACcgat
ttttttggaatatttattTCGTTTTTGTACGGTTTTATTTAGATTCATGT
AAATACTTGTTTTTGTACAGAAATGACCCTCAACATGTAAATAGTGCCTT
TAAATCACATTCAGTTAATCTTCAATtcaccttttcataaatttgtcTGA
CACGCTTAAAACCTTCTCAATTTGTATAGGCTTTCAACGATGTAACAGAC
CAAGTGCTGAGCTcacccagctagcacacaatgttgtttcgacgtctatc
taatgttcacaacgttcGTATAACGTTAgaagaacgttaaaacaacgttg
tgtgtcagcccAGTTATTGCAGACGTTGGGACAGTCTGATTCTCTGACCt
ctacaaaattgaaaatagcaTAAAGAGCTCTGATTTGCAATCGAGTACAT
TAACGGCAGTCTAGGGCTGCATTGgctaaaagaaaaaacacgTGCAGAAG
ATTTATAGTTTGTTGTATTtttcttctcaattttaaaaaatatattcctA
GAATTTATAATTAAGtaacataaaatgaaaatttcagtcATAAGTCTGGC
TGCCAGATCTGCAGGAAAACAAATTTCGAAGCCTTCTTCTAAATCTTTTG
AATTTCCCTCCTTTCTGAGGGCGGCGAGGGGCGTCATTGGATTCGAAACT
GTCAACAGAAGGCGGACAGTAAGTTACTTCCATACGGTATGAGGTATCAC
TAGAACTGGAACTACACTGAATGGTGCTTGAGATGGGCGGGCGTGGCACA
AATGGCTCCATTGGGGTGGGTTCGAGGGCGGGGTTATCATCTCTCACATG
GTGAATGACAACGCTCTCTTCATTCAAAAGAGCTTTCTTCTTTCGATGTT
CTTCGACCAGCTTTGGTATTTGGCCTGGCTTATATTCGGGAAAACCCTTC
CGCGCCAATATTTCATTCTTTGCTTTATAACAAGAGCCGGAATCCTGTTT
TTGGGAGCAACTGACAGTAGGTGTAACACAAGATGACTCTTTAGCAATAG
GGAAAGAGAGTTTGTTTTTGTCGAAAGCAGTATTTGGCTTTTCTGAACAA
GTCTCGTCACCAGAGCTAGAGCCAGGACTCTGCGGTATATT
Run BLAST on NCBI

transcript from alignment at sc0000210:266416..275562+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015328 ID=TCONS_00015328|Name=TCONS_00015328|organism=Clytia hemisphaerica|type=transcript|length=9147bp|location=Sequence derived from alignment at sc0000210:266416..275562+ (Clytia hemisphaerica)
CTTTGTCACGCGATAAAGTGACTCTTTTTAAATGGTATAGTGACTTTGCA
GGCAGGCAAGAAACATTCAGAAAACGCAGGTAACGTTTTGCAGTGTTTCA
ATCTTTGCCACTAATGGAGACTTTGGACTGGTTTCTCCACCGAAAATACG
ATTATAAAAATTTTGTGGTGggtttaatttcgcgaaaatggcaaaatttc
gtgaaatcgcggaatttaatctcgcgaaatttaatctcgcgaaatttaat
ctcgcgaaagttaGTCCGATTAATACATAAGATATCTCTAAATTTTGCGA
AATGGGAGAAAGTTAAAGTTGGTCTATAATGCTGTGTCAGCAAATTATTG
GAGGAGATACGTTAAATGATGTCCTTTTAAAATTTCGCATTGCATTTAAA
GTAAATATGATCGACCTAGTTCCTTGGATCTATATGATattattagttac
acggtcAGCGAGGGGTGCAATACGGAATATATTGGATCAGTAAAAAGCCG
TTTTGGGCGAGGCTTGCTGCGGCTATGAACTGATAtgtatacagttgacg
ctctctaattcgacgttctactattcgataggctcccttattcgatgaaa
cttaaagtccccttgaagatcgaattagagagcgtcaactgtatgctCTA
TTAAATTCTTACAGTCAACCCTCTCTAATTTGAACCTCTATTATtagaat
ctttctgtaattcgatttTAAGCATTTGTCCCTTCAGCTGGAAAATCGCA
CGAAATCCTCTcaattattcgaatctttctctaattcgaataaacaTTTG
agaatcgaattagagagagtcaactgtatatgTATATGCGCTATTAATTT
CTTATATGTTTCAGAGAAAATCTTGGTTCGCTTTACAACAAAAAAAATGA
CGAATTGTTGTTCCTCCCTTTGGAGAGGTTGGGTACGAATTTGTTCTGCC
ATTAATGGCTTTTTCGAACGTTCTTTCGTTAAATGGAGTGGTATTGTGTT
CGATCACCCATGGAAAGTGATCCTAAGTGGTTTATTAATTGCTCTTGGGC
TCATGGCTGGTTTCGCCAGATTCAATCCTCAAACACAAACTGAACGATTA
TTCTTTCCCGAACACAGTCGAAGTCGCGATGATTTAGAGCGCGCGGAGAA
AactttcccgtcaaaatttaaACCGGATCAATTTTTCATCACAATGGCGG
ATGGTGTATCGTCTGTGTTGAACAGTAAAGCCTTGAAATTAGGTTTAAAA
TATCATAACCGGATCATGAATGAAACTGGTATCGAACAAATATGTTTGGA
ATCTAACAAATCTTTAACAGGTGTACCATGTGTTTTCCTGGACCCTTTAT
TCGTGTTCAGTTACAACGAATCATCAATCACAGATGCGTCTATTCAACCC
ATTCTCACAAACGCTCTTCGAAACCGGAAAATTATTTTCCCGAACGGGAT
AACAGCGGAAAGAAATTTCCCATCCATCTTCGGGCGATATGAGTATGATA
ACATTACTCAAAGAATCTCAGCCACAGCTTTAAGGTTCATGTATTTTAAC
AAATTCCCTGAAACTGATTCCACACATAAATTAACGTCAGacattcagaa
aaaaatgatcGATATTTTGTTAGATGCGGGAGTTCCGGAGGCTGAAAGAA
ACGGCATGAAACTATACTTGTTGACAGGTCGAAGTACGGACGATGGGATT
TCTGAAAGCTCCGGTGGCGACATCTCATTGGTTGCTGTCTCGATTACCCT
GATGTGTACTTTCGCAACTGTTGTTCTTTTTCGTCTGAGAAATCGAGTCA
ATGGGCACGTCACAGTGGGTAAGAAATTTTTCTATGAACCCTTTAACGTG
TGCGACTTTTTATTTGTCCGTGCCTTAAATATAGATTTAGaagtataaaa
tataaaaatataaaatataaaagattttcaaggctGGACCTaaattttcg
acaatttttgGTATATCAGATAACACCCGAGATACTTTTTGCACGGAACG
TGATGACGAGATATCTTGTTAGCAGTAATTTTGGCACGGAACAGGGTTAA
AGGGTTCATGAGCATGGATCGACGCTCGAATTATATTTCTTAATGGGTGT
AAAATAATCTTAAAAGAGGGGTGCAAGATTTTGATGACACTGttattatc
tattcataataaaAGAAGATAATTACCGTGTCATTGTACAGTGGACTCTC
GccaattcgaacttctattattcgaatctctctttaattcgaattaaTTC
TGAGTACCCTTCAGAGGAAAACCCTTGTAAAATGCTTTCTACAAATCGAg
tctctctgttattcgaatagACTTCCCGTTCGacttcgaattagcgagaa
ctgaatgtattttcttttattcGAAATTATTTAAAATCTTATTGGTTTGA
AAAGTGACCCACGTGACTTTCTGTAGTGAGTAGTCAGCACTTTTTTAATA
CGAGATCTTTTCATACCACAGGATTTGCAGGTATTGGATGCATCGCACTT
GGGATTGGCTCTGGTTTCGGAATGGTCATGTTGAGTGGCCAGTACTTCGT
GGCTTTCGTTGGAACGCTTCCTTTCCTCGTCCTTGGTGTGGGCATTGATG
ATATGTTTATCATTCTGGATGGTGAGTTTCTggtcaaaaacctgtttttc
ctgtttgaataatcgaggcaaaTTTTAAAACGCTCCTATGTCAGAATTAC
TGACCGTTATAAACCCTGGAATAATCTTTGATATTAGTTTTTTGGTACCC
ATCACATACCCCGCATCATCACATACCCCGCATCATCACATCGAGTATTC
AAGGAAAGATAATTCTAgcactctcgatgcatttacaccgctattcaGCA
GACGCTAACATTAGGGCACCACTCTGATCAAAGGATTTTAGTTGGGcggg
attgagaaactgcctccagggttttttataaagTTCAGTGATGTTGAAAT
CCACCAATTTCTTTATGAGTGATTAAAGCATTTTTGTCCTTGGTGCTGGT
GGGATCGGGCAAGAGCTTTTTATCCTTGTTTGATATTGAGAAATATTGAA
GATTGTCATCATAGTTTTTTTGATTGATTATTTTTGttatgtcttctttt
ttgacctttCGAATTTTGCCGTTCACACAGTGTTTTGGAACGTTTTGTTT
GAATGTTCCAGGAAAAATTGCTCATGCCCCAGTTTTTTCTTTTGGAGTTT
GATGAGGAAGGGAGGGAAACTTGCTAATCCTCCTATCTTTAGACACAAGC
TTAATACAACCCTGTCTCcaagccccggtggaacttttccccACAGTGGG
GAAAAAATTTATGTCGAAATCCctaagtcaatttcccagtggggctgaaa
ttgtagggtattttgtcCTTCGGGGATGAAATTTTGGCCAGATTTTTctg
tggggctggggtcccagcgggggGTGCCTTAATTAAGTTGACTCAGTTGA
CTCTCTctgattcgatcttcaaggaaccaaagatttctttcgaattaAAG
AAGATTCGGGTTCTTTCCAGCTCAGGGGACCAAtaatttagttcgaatta
cagaaagattcgattaTAAAGGTTCGATTTAGAGAGTAACTGTATCATGT
ATGCCTTTTTTCCTTTAGCACTGGACAGCCTACCATCTGACTTCACCGGT
AAAAATCGTTTACAAAAGACCATGGCTAAAGTTGGTGCGTCAGTAACCAT
GACTACAGTGACTGACGTCATCGCTTTTGCTATCTCCTCCAGCACTGATT
TTCCCGCCATTCGTTATTTCTGCATGTATGCACTAACAAGCATCCTTTTC
GCGTACCTGCTTATAATGACTGTCTTTTTAGCAGCTTTGGCGCTTGATAT
TAAAAGGATTGAGGTTGGTAATTGGGATTGGTTTTGCTGCAAGAAACAAA
AAGATAACAATCCATGGAGTGAAGAAGATATGAACACATTATCAAAAACT
GTAAGCCTTTCTTAAAATACTACTCAAAATGTCAAAAGATATTGCGCCGG
GTTTCTGAATATTTCGTcgtctttcaaaatttcaaggtcaggGGAGAATG
ACGATTTTGGCCTTGTTGACGgccatttttgaacattttgatcCTGAGAT
TCGGTCCTGATCGAATGTTCTACgttttaagtctcatgttaaaacttaga
gttaaaactctacttttcaACTGTAAGTTAATggacttaaaaatcacttg
ccttttcgaatttttggagCCAAGGCTCTTGGGTTTTATTCATTGTATTT
GCGATGTGTTAAAACAATATCCTTAAACTTCTTAGTCTCAGTGTTTGTTa
gcgccgtgattcctactcctttgtgggtaggacccatcccgaatgcattc
ggagggctcatatctatctatctaagcTTCTTAGTATACTGGGGAGGGAG
TAAAccgaaaaactttttattatgcaataaatattgattttttcttCTCA
GCCTTTCTTTGGTTTCATGCCTCAAATTCGGTTTGTGAGAATTTGGTTCT
AGATACTCTGACATATTATTTATCTTTTCGACAGGTTATGAAGAAATGGG
CggaatttttaatgaaaacacCCGTGCGTATCGTAGTGGTTTTTTTATCG
CTCGTTTTGTTAGCGGCAGGTATCTACGGGACCACACAATTGGCGGAAAA
ATTTGATATCAGGCAGCTTGCACCTGATGGGTCGTATTTCATTGATTATT
TAGATAACGAGCGAATGCATTATCCAGTTGGATTTCAAGTCAGTATTATA
AACGATGACGAGAATTTTGATTATACAAACCCCCGTCTTCAAGGGGAATA
TAATTATTTATCCAACATATGCAAAGAAAATTCTTATATGAAGAAAACTA
CTGTGAACTGGTTGCAAGCATTTTTAGAATCTAATGAATATAAGAGTAAc
ccaaatatgacattttaTCAACGTCTcggtttgtttttaaaagaatttcc
gGAATACGGACGCGACATTAAATGGCATACGGAAAACGAACAAAGAATCC
GGGCATCCAAAATACAATGTCAAGATTTAGACACTGATTCATGGGACTTC
CGTAAGAAAGCCATGTTGTCTCTCCGCGATGAGTTCGATTCGAAATCGAA
CATATCGAATAGTACTTTTCCAATTTCGTTTAATTATTTTTACCGGGAGC
AAATGGTTTCTGTTCCCTCCGAAACTATGATGAATTTGGTGTTGTGTGCT
ATTGCAATTCTGATCATTACCACACCTTATCTGGTTCACCCTCTTGTCAT
CTTAATGGTTTTCGGAGGTAAATGTCTTTTATTTACGCCACTTAACAGTC
GAAATCTCACAAATAGAGGAACCTTCTAGGAACCTGGTGAAATACCTTTC
TCTTTCTCGTGCAtcttttgtgagtatttttgttccaTTGGGTGTCGAAT
TGAGTCAATAAAGCCTTATGCTCTTCAattgttcttaatcttttggtcat
cgaagcctcatACTCTTGTATACAGTCaattctcgctaattcgaagtCGA
ACGCTAAAttgttcgaataacagaaaGATTCGGACTATAGAAAGCATTTT
ACGAAGGTTTTCCTCTGACGGGTACTCAGAATTaaagttcgaattaaaga
acgATTCGAtttatagaagttcgaattagcgaaagcccgttttagtttgt
ttttataaaaaacgtgtaagacttCAAACAAGCTTTTTGTTTATCCCCCA
CAGGCTTCGTTGCTTTGGTGTTCGAACTTTTCGGATTGATGGTCATTTGG
GATGTGGCTTTGAATTCCATCTCAATGATCACCTCCATAATGGCTATTGG
ATTTGCCGTCGATTATTCCGCCCACGTTGCGCATGCGTATTTGCTAGTTG
AAGGCGATACACCAGAACAACGCATGATCAACGCCATCAGTTCTATTGGT
GCAAGTGTCTTTATGGGAGGTGAGTGTCTTTAGGTCGTCACAGTCTGGAT
CACTAACCTCTATAAAACCCTTCTAAGAGTAAAGACCCTCCGTTTAAAGG
ATGTCAGTAACCTAATTATTTAAAGATGAAGAAATTTGGAATTAATGATA
AAGGCAGTTAAATGTCCAACACTTTCTCACATTATGGAGAAAAGGGTGTG
TCCAGTTAACTTGACTTTGACTTCTTTTTAAAGTAAACCACTTTGTCATC
AGTCAATCTACTTTACATTCTGTTGAATATTGCAAATTTTTAATCATATT
TCCTAGtcaaagtatatatttttgaaatcaccAAGCTTTAAGCTTTCCAA
AGACGTAAAAATAACATTTATACGACCTATCtataaaaagtcttcatttt
tcttcatgttcttttcaaatttcacggAAAAAATTAACAGTAAATTAATA
AGCTCCTTCCTACCTTCCCAACGATagcaaactttttaagattgaaGCAT
TGGTTGAGAAATAACAAGTAAAGCAAAATTTAGCGCACatttatcgtgaa
tagactttaagtaATATTCGTGAAATAAGGTATTCTGTTTCATCACATTG
TTAAAGGTTCCATTGAGCATTAATAGAAGTTGTGCTGGGTGATAATTGTC
TTATTGTGTCCACAGACAGCATTTGAAAGATCTTGATAGACttttttctc
catttctttTCATTCACAGGTTTCACAACCTTCCTTGGTATCTTAGTGCT
CATTTTCGGACAGTCCGAAATTTTCCggattttcttcaaaatggtTTTCG
GAATCGTCGTTTTGGGATTGTTAAATGGATTGCTCTTCCTTCCTGTCTAT
CTATCATGTAAGTTGCTCAGTTTCTAGTCTAGGATAGGGGGTCTGTCAAT
CCTCAGTTTAGAGTGACAGAAAATGAGCTGTAACTTTAAGATTTAATACA
CATCCGTTTTCCTTGAGATGTGTGTTTTTCTTATCATAACTCAAAAAACA
ATGGTTAACCCTTTAAGTCTCATTTTAGGGGAATAAAAGCAATGATGGAA
AGGTGCCTAGTAGTAAAACTTAAAATTAATTCGCTAGAGGATAGtatcaa
gtaaagcagggccaaatttggatgttcttggatcactcgttgaccaaaaa
tgatcaaaaaacggtcaaaatctcaaaaatctcgatttttgtcaaatttt
tccattttttgactttttggcttaaaatctcgctggaaagacttactatt
gatttttttggtataaccatgaagcccaatctaATTTTTACGAGTTAGac
taaaaatgatgatttttaaCTCAATCTGGACATTANagtggatttttgtc
aaaatttttccattttttgactttttagcttaaaatctcgctggaaagac
ttacttcgccctcctatatagcccatgtccgATATAcccgacattggcac
ttaaagggttaatgtaAAACTTTTTGCTTAGACTATAAATCTAGATACGG
GGATGCaccaaattctttttttttcctttttgtaaaTAAGCAAACCAAAT
ACAGTGCTATTCGAAcctttctttaactcgaacttaTTCTGAGTAAACCC
TCGTAAATTGCATTCCATGATTCGATTCGATGACCCTTCTTAGTTTATTA
ATGTTATACAATGTTGGGATTATCTGACTTTCTCGAATCTTCGTTCTTCT
TTCTTCAGTGTTTGTTCGAAACAAGGTAGATATTCGCCATACTTCAAACT
ACAATCAAGATGAACGCCTGCCGCCCTCGGGTGGTGAAAAAAGACCTTCA
AAGAAGATGAAAGAAATGAACAATAAAGTaggcgatgacgtcatcgaaaa
tcCTCATTCACCTGAATTTAAACCTGTAAATGGTTCAATCAAAAGTAACG
ATTTGGTGTAACAATGCACGAACTATGGGTTTGAAAGAATCCTTAAATTT
CAGTTTCCCACATTACTGAAGGAGCTGACTTCACTTTTCATATACTGCAT
GTGTTCTTTTTTCATAAGCAAGtgtccctatatcaggctcgcatcacatt
atgcttagcattttTGGTACCAAAagctgagcctgcatatgcttataaac
gttatgtttatagaaaaaaaaatttatatagcTATGTAAAGATTTTTCTA
ACcgatttttttggaatatttattTCGTTTTTGTACGGTTTTATTTAGAT
TCATGTAAATACTTGTTTTTGTACAGAAATGACCCTCAACATGTAAATAG
TGCCTTTAAATCACATTCAGTTAATCTTCAATtcaccttttcataaattt
gtcTGACACGCTTAAAACCTTCTCAATTTGTATAGGCTTTCAACGATGTA
ACAGACCAAGTGCTGAGCTcacccagctagcacacaatgttgtttcgacg
tctatctaatgttcacaacgttcGTATAACGTTAgaagaacgttaaaaca
acgttgtgtgtcagcccAGTTATTGCAGACGTTGGGACAGTCTGATTCTC
TGACCtctacaaaattgaaaatagcaTAAAGAGCTCTGATTTGCAATCGA
GTACATTAACGGCAGTCTAGGGCTGCATTGgctaaaagaaaaaacacgTG
CAGAAGATTTATAGTTTGTTGTATTtttcttctcaattttaaaaaatata
ttcctAGAATTTATAATTAAGtaacataaaatgaaaatttcagtcATAAG
TCTGGCTGCCAGATCTGCAGGAAAACAAATTTCGAAGCCTTCTTCTAAAT
CTTTTGAATTTCCCTCCTTTCTGAGGGCGGCGAGGGGCGTCATTGGATTC
GAAACTGTCAACAGAAGGCGGACAGTAAGTTACTTCCATACGGTATGAGG
TATCACTAGAACTGGAACTACACTGAATGGTGCTTGAGATGGGCGGGCGT
GGCACAAATGGCTCCATTGGGGTGGGTTCGAGGGCGGGGTTATCATCTCT
CACATGGTGAATGACAACGCTCTCTTCATTCAAAAGAGCTTTCTTCTTTC
GATGTTCTTCGACCAGCTTTGGTATTTGGCCTGGCTTATATTCGGGAAAA
CCCTTCCGCGCCAATATTTCATTCTTTGCTTTATAACAAGAGCCGGAATC
CTGTTTTTGGGAGCAACTGACAGTAGGTGTAACACAAGATGACTCTTTAG
CAATAGGGAAAGAGAGTTTGTTTTTGTCGAAAGCAGTATTTGGCTTTTCT
GAACAAGTCTCGTCACCAGAGCTAGAGCCAGGACTCTGCGGTATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008575XLOC_008575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015328-exon-sc0000210-1491911889:266416..266494TCONS_00015328-exon-sc0000210-1491911889:266416..266494Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:266416..266494TCONS_00015328-exon-sc0000210-1510915933:266416..266494Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:266416..266494TCONS_00015328-exon-sc0000210-1575043694:266416..266494Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:267280..268233TCONS_00015328-exon-sc0000210-1491911889:267280..268233Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:267280..268233TCONS_00015328-exon-sc0000210-1510915933:267280..268233Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:267280..268233TCONS_00015328-exon-sc0000210-1575043694:267280..268233Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:268887..269036TCONS_00015328-exon-sc0000210-1491911889:268887..269036Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:268887..269036TCONS_00015328-exon-sc0000210-1510915933:268887..269036Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:268887..269036TCONS_00015328-exon-sc0000210-1575043694:268887..269036Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:270034..270365TCONS_00015328-exon-sc0000210-1491911889:270034..270365Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:270034..270365TCONS_00015328-exon-sc0000210-1510915933:270034..270365Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:270034..270365TCONS_00015328-exon-sc0000210-1575043694:270034..270365Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:270950..271682TCONS_00015328-exon-sc0000210-1491911889:270950..271682Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:270950..271682TCONS_00015328-exon-sc0000210-1510915933:270950..271682Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:270950..271682TCONS_00015328-exon-sc0000210-1575043694:270950..271682Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:272119..272334TCONS_00015328-exon-sc0000210-1491911889:272119..272334Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:272119..272334TCONS_00015328-exon-sc0000210-1510915933:272119..272334Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:272119..272334TCONS_00015328-exon-sc0000210-1575043694:272119..272334Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:273035..273172TCONS_00015328-exon-sc0000210-1491911889:273035..273172Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:273035..273172TCONS_00015328-exon-sc0000210-1510915933:273035..273172Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:273035..273172TCONS_00015328-exon-sc0000210-1575043694:273035..273172Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1491911889:274024..275562TCONS_00015328-exon-sc0000210-1491911889:274024..275562Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1510915933:274024..275562TCONS_00015328-exon-sc0000210-1510915933:274024..275562Clytia hemisphaericaexon
TCONS_00015328-exon-sc0000210-1575043694:274024..275562TCONS_00015328-exon-sc0000210-1575043694:274024..275562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:266416..275562 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.171434	0.0703894	0.0612966	0.0332752	0.837517	0.592828	4.64961	2.26559	6.70724	5.23134	3.80459	5.07568	0.40069	0.141073	0.389383	0.988899	4.17586	2.6451	1.93549	0.0170558	4.90872	4.08706	2.09543	0.402214	2.8784	1.58659	1.89293	0	0.570834	0.0918298
Blast
[Close]
BLAST of TCONS_00015328 vs. Swiss-Prot (Human)
Match: PTHD3 (Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 5.493e-25
Identity = 111/381 (29.13%), Postives = 180/381 (47.24%), Query Frame = 1 
Query:  964 LMCTFATVVLFRLRNRVNGHVTVGFAGIGCIALGIGSGFGMVMLSGQYFVAFVGTLPFLVLGVGIDDMFIILDALD--SLPSDFTGKNRLQKTMAKVGASVTMTTVTDVIAFAISSSTDFPAIRYFCMYALTSILFAYLLIMTVFLAALALDIKR-------IEVGNWDW-----FCCKKQKDNNPWSEEDMNTLSKTVMKKWAEFLMKTPVRIXXXXXXXXXXAAGIYGTTQLAEKFDIRQLAPDGSYFIDYLDNERMHYP-VGFQVSIINDDENFDYTNPRLQGEYNYLSNICKENSYMKKT-TVNWLQA---FLESNEYKSNPNMTFYQRLGLFLKEFPEYGRDIKWHTENEQRIRASKIQCQDLDTDSWDFRKKAML 2049
            L+  FA    FR     N      F  I    L + SGFG+++  G  FV  V   PFL+LGVG+DDMFI++ A    +L  D   + R+    +K   S+T+TT+T+++A      + F +++ FC+Y   ++LF Y   +T F A +ALD KR       ++  +  W     FCC            D++ +S      +  FL ++  +  VVF+ ++ + + IYG   + E  D+R LA D SY   Y + E  ++   G +V +I   +  DY +  ++ +    + I ++N Y+ K  T  WL A   +L+ N    N   TF   +  FL  FP +  DI   + NE       IQ  D+ + +   +KK +L
Sbjct:  393 LIILFAVTSCFRFDCIRNKMCVAAFGVISAF-LAVVSGFGLLLHIGVPFVIIVANSPFLILGVGVDDMFIMISAWHKTNLADDI--RERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISLFFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIV-TKKVDYWDKDVRQKLENCTKIFEKNVYVDKNLTEFWLDAYVQYLKGNSQDPNEKNTFMNNIPDFLSNFPNFQHDINISSSNEIISSRGFIQTTDVSSSA---KKKILL 766
The following BLAST results are available for this feature:
BLAST of TCONS_00015328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTHD35.493e-2529.13Patched domain-containing protein 3 OS=Homo sapien... [more]
back to top