TCONS_00015326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015326
Unique NameTCONS_00015326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015326 ID=TCONS_00015326|Name=TCONS_00015326|organism=Clytia hemisphaerica|type=transcript|length=4192bp
GAATCACTCACCCTTCTGAGTGTCTTAGAAACAAAAATATACGAAAAGTC
TAATCAATGGAATTGACAACATCACGTGCACCCTAATTAAAAACCATTGT
TTCAAATCACATGGAATATTTTCATTAAGGAGAAAATCTTGGTTCGCTTT
ACAACAAAAAAAATGACGAATTGTTGTTCCTCCCTTTGGAGAGGTTGGGT
ACGAATTTGTTCTGCCATTAATGGCTTTTTCGAACGTTCTTTCGTTAAAT
GGAGTGGTATTGTGTTCGATCACCCATGGAAAGTGATCCTAAGTGGTTTA
TTAATTGCTCTTGGGCTCATGGCTGGTTTCGCCAGATTCAATCCTCAAAC
ACAAACTGAACGATTATTCTTTCCCGAACACAGTCGAAGTCGCGATGATT
TAGAGCGCGCGGAGAAAactttcccgtcaaaatttaaACCGGATCAATTT
TTCATCACAATGGCGGATGGTGTATCGTCTGTGTTGAACAGTAAAGCCTT
GAAATTAGGTTTAAAATATCATAACCGGATCATGAATGAAACTGGTATCG
AACAAATATGTTTGGAATCTAACAAATCTTTAACAGGTGTACCATGTGTT
TTCCTGGACCCTTTATTCGTGTTCAGTTACAACGAATCATCAATCACAGA
TGCGTCTATTCAACCCATTCTCACAAACGCTCTTCGAAACCGGAAAATTA
TTTTCCCGAACGGGATAACAGCGGAAAGAAATTTCCCATCCATCTTCGGG
CGATATGAGTATGATAACATTACTCAAAGAATCTCAGCCACAGCTTTAAG
GTTCATGTATTTTAACAAATTCCCTGAAACTGATTCCACACATAAATTAA
CGTCAGacattcagaaaaaaatgatcGATATTTTGTTAGATGCGGGAGTT
CCGGAGGCTGAAAGAAACGGCATGAAACTATACTTGTTGACAGGTCGAAG
TACGGACGATGGGATTTCTGAAAGCTCCGGTGGCGACATCTCATTGGTTG
CTGTCTCGATTACCCTGATGTGTACTTTCGCAACTGTTGTTCTTTTTCGT
CTGAGAAATCGAGTCAATGGGCACGTCACAGTGGGATTTGCAGGTATTGG
ATGCATCGCACTTGGGATTGGCTCTGGTTTCGGAATGGTCATGTTGAGTG
GCCAGTACTTCGTGGCTTTCGTTGGAACGCTTCCTTTCCTCGTCCTTGGT
GTGGGCATTGATGATATGTTTATCATTCTGGATGCACTGGACAGCCTACC
ATCTGACTTCACCGGTAAAAATCGTTTACAAAAGACCATGGCTAAAGTTG
GTGCGTCAGTAACCATGACTACAGTGACTGACGTCATCGCTTTTGCTATC
TCCTCCAGCACTGATTTTCCCGCCATTCGTTATTTCTGCATGTATGCACT
AACAAGCATCCTTTTCGCGTACCTGCTTATAATGACTGTCTTTTTAGCAG
CTTTGGCGCTTGATATTAAAAGGATTGAGGTTGGTAATTGGGATTGGTTT
TGCTGCAAGAAACAAAAAGATAACAATCCATGGAGTGAAGAAGATATGAA
CACATTATCAAAAACTGTTATGAAGAAATGGGCggaatttttaatgaaaa
cacCCGTGCGTATCGTAGTGGTTTTTTTATCGCTCGTTTTGTTAGCGGCA
GGTATCTACGGGACCACACAATTGGCGGAAAAATTTGATATCAGGCAGCT
TGCACCTGATGGGTCGTATTTCATTGATTATTTAGATAACGAGCGAATGC
ATTATCCAGTTGGATTTCAAGTCAGTATTATAAACGATGACGAGAATTTT
GATTATACAAACCCCCGTCTTCAAGGGGAATATAATTATTTATCCAACAT
ATGCAAAGAAAATTCTTATATGAAGAAAACTACTGTGAACTGGTTGCAAG
CATTTTTAGAATCTAATGAATATAAGAGTAAcccaaatatgacattttaT
CAACGTCTcggtttgtttttaaaagaatttccgGAATACGGACGCGACAT
TAAATGGCATACGGAAAACGAACAAAGAATCCGGGCATCCAAAATACAAT
GTCAAGATTTAGACACTGATTCATGGGACTTCCGTAAGAAAGCCATGTTG
TCTCTCCGCGATGAGTTCGATTCGAAATCGAACATATCGAATAGTACTTT
TCCAATTTCGTTTAATTATTTTTACCGGGAGCAAATGGTTTCTGTTCCCT
CCGAAACTATGATGAATTTGGTGTTGTGTGCTATTGCAATTCTGATCATT
ACCACACCTTATCTGGTTCACCCTCTTGTCATCTTAATGGTTTTCGGAGG
CTTCGTTGCTTTGGTGTTCGAACTTTTCGGATTGATGGTCATTTGGGATG
TGGCTTTGAATTCCATCTCAATGATCACCTCCATAATGGCTATTGGATTT
GCCGTCGATTATTCCGCCCACGTTGCGCATGCGTATTTGCTAGTTGAAGG
CGATACACCAGAACAACGCATGATCAACGCCATCAGTTCTATTGGTGCAA
GTGTCTTTATGGGAGGTTTCACAACCTTCCTTGGTATCTTAGTGCTCATT
TTCGGACAGTCCGAAATTTTCCggattttcttcaaaatggtTTTCGGAAT
CGTCGTTTTGGGATTGTTAAATGGATTGCTCTTCCTTCCTGTCTATCTAT
CATTGTTTGTTCGAAACAAGGTAGATATTCGCCATACTTCAAACTACAAT
CAAGATGAACGCCTGCCGCCCTCGGGTGGTGAAAAAAGACCTTCAAAGAA
GATGAAAGAAATGAACAATAAAGTaggcgatgacgtcatcgaaaatcCTC
ATTCACCTGAATTTAAACCTGTAAATGGTTCAATCAAAAGTAACGATTTG
GTGTAACAATGCACGAACTATGGGTTTGAAAGAATCCTTAAATTTCAGTT
TCCCACATTACTGAAGGAGCTGACTTCACTTTTCATATACTGCATGTGTT
CTTTTTTCATAAGCAAGtgtccctatatcaggctcgcatcacattatgct
tagcattttTGGTACCAAAagctgagcctgcatatgcttataaacgttat
gtttatagaaaaaaaaatttatatagcTATGTAAAGATTTTTCTAACcga
tttttttggaatatttattTCGTTTTTGTACGGTTTTATTTAGATTCATG
TAAATACTTGTTTTTGTACAGAAATGACCCTCAACATGTAAATAGTGCCT
TTAAATCACATTCAGTTAATCTTCAATtcaccttttcataaatttgtcTG
ACACGCTTAAAACCTTCTCAATTTGTATAGGCTTTCAACGATGTAACAGA
CCAAGTGCTGAGCTcacccagctagcacacaatgttgtttcgacgtctat
ctaatgttcacaacgttcGTATAACGTTAgaagaacgttaaaacaacgtt
gtgtgtcagcccAGTTATTGCAGACGTTGGGACAGTCTGATTCTCTGACC
tctacaaaattgaaaatagcaTAAAGAGCTCTGATTTGCAATCGAGTACA
TTAACGGCAGTCTAGGGCTGCATTGgctaaaagaaaaaacacgTGCAGAA
GATTTATAGTTTGTTGTATTtttcttctcaattttaaaaaatatattcct
AGAATTTATAATTAAGtaacataaaatgaaaatttcagtcATAAGTCTGG
CTGCCAGATCTGCAGGAAAACAAATTTCGAAGCCTTCTTCTAAATCTTTT
GAATTTCCCTCCTTTCTGAGGGCGGCGAGGGGCGTCATTGGATTCGAAAC
TGTCAACAGAAGGCGGACAGTAAGTTACTTCCATACGGTATGAGGTATCA
CTAGAACTGGAACTACACTGAATGGTGCTTGAGATGGGCGGGCGTGGCAC
AAATGGCTCCATTGGGGTGGGTTCGAGGGCGGGGTTATCATCTCTCACAT
GGTGAATGACAACGCTCTCTTCATTCAAAAGAGCTTTCTTCTTTCGATGT
TCTTCGACCAGCTTTGGTATTTGGCCTGGCTTATATTCGGGAAAACCCTT
CCGCGCCAATATTTCATTCTTTGCTTTATAACAAGAGCCGGAATCCTGTT
TTTGGGAGCAACTGACAGTAGGTGTAACACAAGATGACTCTTTAGCAATA
GGGAAAGAGAGTTTGTTTTTGTCGAAAGCAGTATTTGGCTTTTCTGAACA
AGTCTCGTCACCAGAGCTAGAGCCAGGACTCTGCGGTATATT
Run BLAST on NCBI

transcript from alignment at sc0000210:260296..275562+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015326 ID=TCONS_00015326|Name=TCONS_00015326|organism=Clytia hemisphaerica|type=transcript|length=15267bp|location=Sequence derived from alignment at sc0000210:260296..275562+ (Clytia hemisphaerica)
GAATCACTCACCCTTCTGAGTGTCTTAGAAACAAAAGTAAGGTAAGCATA
TTGATATTTTGTTATTTACTGTGCAAtgttgtacacgtttttttataaga
acataccaaatttttgaagccttcggatgttcttaactttttgagtttta
agcctataaatgttgaaaattaaaaaattatgaaattgagTATATCGTTA
TAAAGAAAAGCTTGCACATCACTAAAACTAAGTTACGTAAATGTAAACAG
CATTATTCGAATTCCACTtctcttatttttctttcaacatCAATTGTCTC
TTAATATTATCTTACTTCAGATATACGAAAAGTCTAATCAATGGAATTGA
CAACATCACGTGCACCCTAATTAAAAACCATTGTTTCAAATCACATGGAA
TATTTTCATTAAGGGTATGTGAGATTTTGATTATATAACTTTATCTGAAA
TGATCGTGATTTCTAAGCTTATATAAGTTTTTTTACATTGATtggacgtt
tttttataagaacatgcattgaagaatttttgaagcctcaaaatgttctt
aaaaatttgtttttattttcaaccttttgtgaatattttcgtccattttc
ctaagaaatcctGTGTCTTATaatctgcaaagccttaaaatgttctgata
ttttggccatcattatgttcttttatagtttgttcttataggtacagaaa
aaaacgtgtagctatAGGATTTATGAGTTCTATTTATTTCCTATttactt
attgatttttgatgattgaataatttatttattcCATTGATTAAACAAAC
CACTGATTGTAAAGAAACTTAAATTCCTATCCTAAAACAGGTTCATTATT
TAGTTTGTCCAATATTTTGGTTGAGGGTTTGATCAAAGGTGACACCTAAG
TTGTCTTTCTGTTTTTCACTTTCCATTGTCACAAAAGCGTattgcagtgg
tagagcatccggctgcGATGCgcaaggtcgtgggttcaatcctcggccgg
gtcataccaaagacttcgcACTTAGTACAAAAATTGTATTTGATGCCTCT
CAGCTCGATACTCAGCAATTAAGGGAAGGATCAAGgataagtggagcaat
ccagggagaagccctctcctaccttcaggtagatagctatcgaaagagca
GCGTTTGGGTCGCCTCCGGCTGCGGTCgtagacttacttactttacttaC
TAAATCATGCTAGATAAAAGAAACGAGTTGCCAAGAATAGTAGTGAGACT
GCTGGATGTTATCGAGTTTGGAGTAAAATTTGGAACAATTTTGACCACGA
TTTCGAAATTTATCTCAAATCGAAGTACCACATTGAGAACAATtcggttt
tattttttatttttcaagaacCTTTTTATGTTGTGTAATTATATTTGAGT
TGCATAAATTATTCTAAATGCTTCGCTCATGATAAACCGGAATGCGGTTT
TTAAATGAATTCATTGATTGAAACGTTGTTATGGTCTTAGTTGAATTTGT
CAATAAATAGGAATGTGTCATCTGGGCTACTCAGTATAAGGCGTATAACG
ATGCTTTGTTGGGTTTTGATGCACTCCTTTTGTTTGGTGGAAGAGCGGAA
TCGAGGCTTTTTTTCGGGCGGATCTGCGGAATTCGAGGAAATTTTGGACG
GAATTTCAGAAATTAGGTCCTATGTCGGGGGGCCGGAAAAATTTGTTCTG
TTTCAAACAAACGGAACCTAACAAGAAATTGGTCGGAATTTCGGAATCgt
gacaaaatattttaaattttcgaaattcgtGACGAAAGtcttgaatttca
aagaaacgTTTCGGTTGTGGAAATTTTGTGTTCGTTTAGACGGTTTGATG
GAAACCAAGGAAAAAATTGACGGCATGGCAGTATCGGGTGTACGCCCTga
atccccccccccctgccGGTACAAAAAGTTACATCTTTAGAGACTGGATT
TCGGTTTCAGCTTTTTGAACGTATGTTACTTTCTCAAAAAGGgaagtttt
aatttttaattttatacaattttttataagaacatccaaatctttaaagc
atctaatgttcctaactttttgagatttaatgctaaatgttcttattttc
accaatttgtgagtattttgcaCACTTTCCTAGAGAAATCGGATGTTTTG
AATGTGTTCTTAAATTTATtcatcgaagcctcatgttcttatttataaaC
AAAGAAGTATCAAAGTTCATTAAGAAGTTTAGGGTATCAATGAAAGATTT
TAATATCTTTGAAACTGTTTCATCTTAAAGTTAAGTTAATAAGAGTATAT
CGAAGAGAATTCGAAGTAAATAAGGATGCTTTACCAGGAAAAGTTGTTCC
TTTCTTTACCTTTTCTTTTCGTTTCTCTTTTTTGTGCATGATAAGGGATA
CAATGTCATAAAGCTTCCTTTTTGCTGTGATGCAGGTGTAAAAATGAGGA
CATTAAAAAAGTTTCTTCCATTGGTCTAACATAATGACTGACCACTTTTT
TTCACTTAATTGCTCGTATACCCCCTTCtcacccactgggaccccttccc
actgaaaaaattggccCAAATATGGTCCTgattggaaaattatactctta
tTTCTGTCCCAACtggaaataatcagataagcaaatcctcactgtaaaat
aATGTACTattttttcatccccactgaattttctgacttgaaagaACAAA
ATTCAAGTCACCAGCCATAAAAAAGCATAGGAGTATATAATCCCTGTCGG
AttttggtcctttatttctacccccccccctggctgaaaATATCCTACCG
GATCTGTGAGCAGGGAATATGCTCGTGTGTCATATTTCGATGCCTTGATT
CTTAAAAGATTTCGGTGTATTTTCAATACCAGTCAGTATATGTCATACtt
tcctgtctcacagccccggtagaactaccattgaaatcccaatggggata
gaaattctattgttccaaggtcaaaaaatccagtgagtctgtgacacagg
ggtgtgttaTAATTTAGAGCGACGAAGTTATGATTCTAAGAAGATTCAAT
ACTTTCAATCATTCTTACTCAGGAAGTTGATCGAAAaactaaaagtccta
gattagtGGGCCATCCACATGAATATCGACTCTACCTATCTCTATATCCC
TAAAGGTCACTCTAGTGCTAGAACAACCTCTTTACTTTCAAGAAGTTTAA
TTTGGAAAGTaatgttataaaaaaatatcacaaaagaTTTTGCAAATGAA
ACACTGAAATGAAGTTATGAAGTTATGGAGTTTCTATCAAACTTTACTAT
TTATTGTTTTATCGTTCTTCTATATTGGAATGTATTAAGTTTTGAGtttg
aaatgtttgaaaagtCTCATTCTCcatacttttaaattttgatcgTTTGT
CCCAACAATTGTACATGGGGCCCTCAGAATATCCAAGCTTATCTTTCTGC
TTTTATAGTCTTTTGAATTCCATATAGTGCTCATATTGTGcttatcaaaa
aaagttttcgaaaaggGAAATCCGTATTCTTCcttttttgttcgtttttt
tagattttttctgaATGAGACTTTCTGTTATTCTTTTCTGTTTCTCATTG
GGATTGTTGGCAGTTTGTTAATTGTATGAAATTGGAGAATAATCCAGAAA
TTTTGGGATGTTTGCCTTTATACCCTATTTAATTATATGgctgattacat
ttagcttagatttgtaaaggacgagcggggcgataaatccgtaatagccc
cgttttttgtaatcgccctgatgtaaacaaaaatttctattggttgaaag
aaaagtatcgtacgatattttgattggttaacaaaatatcgtacgaaatt
ttTAAGccaatcaaaataagagtgttagtcgaatgtttttttatagtttc
gaatgtttttataagtttcgaaaagaatagcgattgagtgttcttcaatt
cttttttttgaccatacaattaacgcggaataacatggtattctcgggtg
attttggattaataacccctcgtttcattgaaaacacttcaaaatagccc
tcactacgttcaggctattttgaaatgttttcaatgaacctcggggttat
taatctcaaatcaccctctaaaccatgttattactagtacttaTTACTTT
TACCCTCAATGTCACTCTCTAACTCTCAACTTTGGACATTCGAGACTTAT
GTTTGTTGTTGAGATCGCAGTCGCAGATATAGTTTTTCGACCACATCtaa
ggaaaaaaaattgatcaaaatggCGCTGTATTTTTACAATCGTAAAATAT
AATAGTTGTAAAATATTTAATCGAATTTATGGTCACCCTAGACAATCGAA
TTTATATGACGTATATTAGCTAACATCTCTAAATTGGTAGAAATCTGTAT
GTGATGTAAGCATTTACTATAATGCAAGTTACacgatttttcttttataa
gaatacgctatatataagaatattcatgatgaaatttgcaaaattccatg
taaattgccaattatcctCAGCTATTCATTCTAGaagctttcacaaaaat
gcccaATTTTTAGCTTGAGATATGCATTTTGTATGCTAAATTTAGTTGGA
GTTTGGTCCTAACCTAATAATATTGTAAGAATATTTAAGAGtgatttttt
tcccaaaaagttaagaatattcatgatgaaatggaaaaacaccatcctta
taaaaaattgtCTACCTTATCAGGGAatacttcgtcggggaaaatttttg
tcgggaaaaattttcgtcggggaaaaatattcgtcacttggccaaagttt
cgtcacttttccccgacgaagttttccccgataaggtatagatttatttc
acttttttcagATAGTGGGTAGTTTGAGGGTTTATTTTTGGGCCCCTTCG
TCAAACTGATAAGATTCAACAAGAGCCTCGTTCTAGTGAAACAACGGGTT
GAAATGTCATTTATCGAAACAAGACGTGGGTCCtgagttttgtatttttt
attattgCTTGGTTATATACACGTTTTACTATAAGAACATCTTAGGTTCT
TAAATCCTTCGTATGCTCTTAACATTTTCAGAGTCTTTTATTCTAAATCT
CATCATTTTGTATAATTTCTTAAGATATCgaatgttttagagtccatTCA
GATTTAAtttgctcttaatattttgatcatcgaaggcttatgttcttata
tagtttgttcttataaaaaaccttcAGGTCTCTTTTCTTCTCAAGATTAG
AGTTTGAGGAGATCTCTTAAAAGATATCGTAAAAAGAAGATATGTGAAAA
TGGAAATACGTTTCACaaggttaaaggttttgtttctaaataagagtgat
aacgtttgcttactcattaattttaattcacaagctttttcacactggat
tgacacggatgtggagcaagattggtcagaaagaggggaaaaaatttttt
ttggcttatatcagcataatataacaataggcacacactttcctgatatg
aaatatgtgtctgatatgaaacgggaacacttatgtaaaaataaaacctt
taagtattATATAATCATTTGCATTcattttttccccttttttcaacttg
ttAACTCATAGAGGTCAGGTTAGCAATGAAAAAGTTttggttttgaagaa
aatgaaaaatacaaggGAAAGTTTGTTATTTGAtgttatattttgaattt
ttatggaGCAAATATGTCTGTCCCttcataatatttttaaagTCGAATGA
CCAAAATCTAAGAACAAATTGAGAACAATTTTTAAGATAATGTAGATGAG
CAATTTGAACTAGCAATAGAATTCGAATGTCGAAAATAAATTATTCTCCG
CGTACAAAAAAAGAGAGCTATGAGTACTATGAGTACTAGTTAGTCGGTAT
TGCAAAAGAGTTTTTCATTTGCTATCATGATACctcaattattttgaaat
gaattcttttttataattgaATTGGCATTGAGATTTCGAATAATTATGGT
TTTCTTTGATTAGCTTAGACAGTCCGTTGGTAAGAGAAACGCTACTGAGA
GAGGAAATAAATCACATTATTTTTGATGATAAAACATTTACTATTTCTTT
TGCATTTAACAACATTGATACTTTGTCACGCGATAAAGTGACTCTTTTTA
AATGGTATAGTGACTTTGCAGGCAGGCAAGAAACATTCAGAAAACGCAGG
TAACGTTTTGCAGTGTTTCAATCTTTGCCACTAATGGAGACTTTGGACTG
GTTTCTCCACCGAAAATACGATTATAAAAATTTTGTGGTGggtttaattt
cgcgaaaatggcaaaatttcgtgaaatcgcggaatttaatctcgcgaaat
ttaatctcgcgaaatttaatctcgcgaaagttaGTCCGATTAATACATAA
GATATCTCTAAATTTTGCGAAATGGGAGAAAGTTAAAGTTGGTCTATAAT
GCTGTGTCAGCAAATTATTGGAGGAGATACGTTAAATGATGTCCTTTTAA
AATTTCGCATTGCATTTAAAGTAAATATGATCGACCTAGTTCCTTGGATC
TATATGATattattagttacacggtcAGCGAGGGGTGCAATACGGAATAT
ATTGGATCAGTAAAAAGCCGTTTTGGGCGAGGCTTGCTGCGGCTATGAAC
TGATAtgtatacagttgacgctctctaattcgacgttctactattcgata
ggctcccttattcgatgaaacttaaagtccccttgaagatcgaattagag
agcgtcaactgtatgctCTATTAAATTCTTACAGTCAACCCTCTCTAATT
TGAACCTCTATTATtagaatctttctgtaattcgatttTAAGCATTTGTC
CCTTCAGCTGGAAAATCGCACGAAATCCTCTcaattattcgaatctttct
ctaattcgaataaacaTTTGagaatcgaattagagagagtcaactgtata
tgTATATGCGCTATTAATTTCTTATATGTTTCAGAGAAAATCTTGGTTCG
CTTTACAACAAAAAAAATGACGAATTGTTGTTCCTCCCTTTGGAGAGGTT
GGGTACGAATTTGTTCTGCCATTAATGGCTTTTTCGAACGTTCTTTCGTT
AAATGGAGTGGTATTGTGTTCGATCACCCATGGAAAGTGATCCTAAGTGG
TTTATTAATTGCTCTTGGGCTCATGGCTGGTTTCGCCAGATTCAATCCTC
AAACACAAACTGAACGATTATTCTTTCCCGAACACAGTCGAAGTCGCGAT
GATTTAGAGCGCGCGGAGAAAactttcccgtcaaaatttaaACCGGATCA
ATTTTTCATCACAATGGCGGATGGTGTATCGTCTGTGTTGAACAGTAAAG
CCTTGAAATTAGGTTTAAAATATCATAACCGGATCATGAATGAAACTGGT
ATCGAACAAATATGTTTGGAATCTAACAAATCTTTAACAGGTGTACCATG
TGTTTTCCTGGACCCTTTATTCGTGTTCAGTTACAACGAATCATCAATCA
CAGATGCGTCTATTCAACCCATTCTCACAAACGCTCTTCGAAACCGGAAA
ATTATTTTCCCGAACGGGATAACAGCGGAAAGAAATTTCCCATCCATCTT
CGGGCGATATGAGTATGATAACATTACTCAAAGAATCTCAGCCACAGCTT
TAAGGTTCATGTATTTTAACAAATTCCCTGAAACTGATTCCACACATAAA
TTAACGTCAGacattcagaaaaaaatgatcGATATTTTGTTAGATGCGGG
AGTTCCGGAGGCTGAAAGAAACGGCATGAAACTATACTTGTTGACAGGTC
GAAGTACGGACGATGGGATTTCTGAAAGCTCCGGTGGCGACATCTCATTG
GTTGCTGTCTCGATTACCCTGATGTGTACTTTCGCAACTGTTGTTCTTTT
TCGTCTGAGAAATCGAGTCAATGGGCACGTCACAGTGGGTAAGAAATTTT
TCTATGAACCCTTTAACGTGTGCGACTTTTTATTTGTCCGTGCCTTAAAT
ATAGATTTAGaagtataaaatataaaaatataaaatataaaagattttca
aggctGGACCTaaattttcgacaatttttgGTATATCAGATAACACCCGA
GATACTTTTTGCACGGAACGTGATGACGAGATATCTTGTTAGCAGTAATT
TTGGCACGGAACAGGGTTAAAGGGTTCATGAGCATGGATCGACGCTCGAA
TTATATTTCTTAATGGGTGTAAAATAATCTTAAAAGAGGGGTGCAAGATT
TTGATGACACTGttattatctattcataataaaAGAAGATAATTACCGTG
TCATTGTACAGTGGACTCTCGccaattcgaacttctattattcgaatctc
tctttaattcgaattaaTTCTGAGTACCCTTCAGAGGAAAACCCTTGTAA
AATGCTTTCTACAAATCGAgtctctctgttattcgaatagACTTCCCGTT
CGacttcgaattagcgagaactgaatgtattttcttttattcGAAATTAT
TTAAAATCTTATTGGTTTGAAAAGTGACCCACGTGACTTTCTGTAGTGAG
TAGTCAGCACTTTTTTAATACGAGATCTTTTCATACCACAGGATTTGCAG
GTATTGGATGCATCGCACTTGGGATTGGCTCTGGTTTCGGAATGGTCATG
TTGAGTGGCCAGTACTTCGTGGCTTTCGTTGGAACGCTTCCTTTCCTCGT
CCTTGGTGTGGGCATTGATGATATGTTTATCATTCTGGATGGTGAGTTTC
TggtcaaaaacctgtttttcctgtttgaataatcgaggcaaaTTTTAAAA
CGCTCCTATGTCAGAATTACTGACCGTTATAAACCCTGGAATAATCTTTG
ATATTAGTTTTTTGGTACCCATCACATACCCCGCATCATCACATACCCCG
CATCATCACATCGAGTATTCAAGGAAAGATAATTCTAgcactctcgatgc
atttacaccgctattcaGCAGACGCTAACATTAGGGCACCACTCTGATCA
AAGGATTTTAGTTGGGcgggattgagaaactgcctccagggttttttata
aagTTCAGTGATGTTGAAATCCACCAATTTCTTTATGAGTGATTAAAGCA
TTTTTGTCCTTGGTGCTGGTGGGATCGGGCAAGAGCTTTTTATCCTTGTT
TGATATTGAGAAATATTGAAGATTGTCATCATAGTTTTTTTGATTGATTA
TTTTTGttatgtcttcttttttgacctttCGAATTTTGCCGTTCACACAG
TGTTTTGGAACGTTTTGTTTGAATGTTCCAGGAAAAATTGCTCATGCCCC
AGTTTTTTCTTTTGGAGTTTGATGAGGAAGGGAGGGAAACTTGCTAATCC
TCCTATCTTTAGACACAAGCTTAATACAACCCTGTCTCcaagccccggtg
gaacttttccccACAGTGGGGAAAAAATTTATGTCGAAATCCctaagtca
atttcccagtggggctgaaattgtagggtattttgtcCTTCGGGGATGAA
ATTTTGGCCAGATTTTTctgtggggctggggtcccagcgggggGTGCCTT
AATTAAGTTGACTCAGTTGACTCTCTctgattcgatcttcaaggaaccaa
agatttctttcgaattaAAGAAGATTCGGGTTCTTTCCAGCTCAGGGGAC
CAAtaatttagttcgaattacagaaagattcgattaTAAAGGTTCGATTT
AGAGAGTAACTGTATCATGTATGCCTTTTTTCCTTTAGCACTGGACAGCC
TACCATCTGACTTCACCGGTAAAAATCGTTTACAAAAGACCATGGCTAAA
GTTGGTGCGTCAGTAACCATGACTACAGTGACTGACGTCATCGCTTTTGC
TATCTCCTCCAGCACTGATTTTCCCGCCATTCGTTATTTCTGCATGTATG
CACTAACAAGCATCCTTTTCGCGTACCTGCTTATAATGACTGTCTTTTTA
GCAGCTTTGGCGCTTGATATTAAAAGGATTGAGGTTGGTAATTGGGATTG
GTTTTGCTGCAAGAAACAAAAAGATAACAATCCATGGAGTGAAGAAGATA
TGAACACATTATCAAAAACTGTAAGCCTTTCTTAAAATACTACTCAAAAT
GTCAAAAGATATTGCGCCGGGTTTCTGAATATTTCGTcgtctttcaaaat
ttcaaggtcaggGGAGAATGACGATTTTGGCCTTGTTGACGgccattttt
gaacattttgatcCTGAGATTCGGTCCTGATCGAATGTTCTACgttttaa
gtctcatgttaaaacttagagttaaaactctacttttcaACTGTAAGTTA
ATggacttaaaaatcacttgccttttcgaatttttggagCCAAGGCTCTT
GGGTTTTATTCATTGTATTTGCGATGTGTTAAAACAATATCCTTAAACTT
CTTAGTCTCAGTGTTTGTTagcgccgtgattcctactcctttgtgggtag
gacccatcccgaatgcattcggagggctcatatctatctatctaagcTTC
TTAGTATACTGGGGAGGGAGTAAAccgaaaaactttttattatgcaataa
atattgattttttcttCTCAGCCTTTCTTTGGTTTCATGCCTCAAATTCG
GTTTGTGAGAATTTGGTTCTAGATACTCTGACATATTATTTATCTTTTCG
ACAGGTTATGAAGAAATGGGCggaatttttaatgaaaacacCCGTGCGTA
TCGTAGTGGTTTTTTTATCGCTCGTTTTGTTAGCGGCAGGTATCTACGGG
ACCACACAATTGGCGGAAAAATTTGATATCAGGCAGCTTGCACCTGATGG
GTCGTATTTCATTGATTATTTAGATAACGAGCGAATGCATTATCCAGTTG
GATTTCAAGTCAGTATTATAAACGATGACGAGAATTTTGATTATACAAAC
CCCCGTCTTCAAGGGGAATATAATTATTTATCCAACATATGCAAAGAAAA
TTCTTATATGAAGAAAACTACTGTGAACTGGTTGCAAGCATTTTTAGAAT
CTAATGAATATAAGAGTAAcccaaatatgacattttaTCAACGTCTcggt
ttgtttttaaaagaatttccgGAATACGGACGCGACATTAAATGGCATAC
GGAAAACGAACAAAGAATCCGGGCATCCAAAATACAATGTCAAGATTTAG
ACACTGATTCATGGGACTTCCGTAAGAAAGCCATGTTGTCTCTCCGCGAT
GAGTTCGATTCGAAATCGAACATATCGAATAGTACTTTTCCAATTTCGTT
TAATTATTTTTACCGGGAGCAAATGGTTTCTGTTCCCTCCGAAACTATGA
TGAATTTGGTGTTGTGTGCTATTGCAATTCTGATCATTACCACACCTTAT
CTGGTTCACCCTCTTGTCATCTTAATGGTTTTCGGAGGTAAATGTCTTTT
ATTTACGCCACTTAACAGTCGAAATCTCACAAATAGAGGAACCTTCTAGG
AACCTGGTGAAATACCTTTCTCTTTCTCGTGCAtcttttgtgagtatttt
tgttccaTTGGGTGTCGAATTGAGTCAATAAAGCCTTATGCTCTTCAatt
gttcttaatcttttggtcatcgaagcctcatACTCTTGTATACAGTCaat
tctcgctaattcgaagtCGAACGCTAAAttgttcgaataacagaaaGATT
CGGACTATAGAAAGCATTTTACGAAGGTTTTCCTCTGACGGGTACTCAGA
ATTaaagttcgaattaaagaacgATTCGAtttatagaagttcgaattagc
gaaagcccgttttagtttgtttttataaaaaacgtgtaagacttCAAACA
AGCTTTTTGTTTATCCCCCACAGGCTTCGTTGCTTTGGTGTTCGAACTTT
TCGGATTGATGGTCATTTGGGATGTGGCTTTGAATTCCATCTCAATGATC
ACCTCCATAATGGCTATTGGATTTGCCGTCGATTATTCCGCCCACGTTGC
GCATGCGTATTTGCTAGTTGAAGGCGATACACCAGAACAACGCATGATCA
ACGCCATCAGTTCTATTGGTGCAAGTGTCTTTATGGGAGGTGAGTGTCTT
TAGGTCGTCACAGTCTGGATCACTAACCTCTATAAAACCCTTCTAAGAGT
AAAGACCCTCCGTTTAAAGGATGTCAGTAACCTAATTATTTAAAGATGAA
GAAATTTGGAATTAATGATAAAGGCAGTTAAATGTCCAACACTTTCTCAC
ATTATGGAGAAAAGGGTGTGTCCAGTTAACTTGACTTTGACTTCTTTTTA
AAGTAAACCACTTTGTCATCAGTCAATCTACTTTACATTCTGTTGAATAT
TGCAAATTTTTAATCATATTTCCTAGtcaaagtatatatttttgaaatca
ccAAGCTTTAAGCTTTCCAAAGACGTAAAAATAACATTTATACGACCTAT
CtataaaaagtcttcatttttcttcatgttcttttcaaatttcacggAAA
AAATTAACAGTAAATTAATAAGCTCCTTCCTACCTTCCCAACGATagcaa
actttttaagattgaaGCATTGGTTGAGAAATAACAAGTAAAGCAAAATT
TAGCGCACatttatcgtgaatagactttaagtaATATTCGTGAAATAAGG
TATTCTGTTTCATCACATTGTTAAAGGTTCCATTGAGCATTAATAGAAGT
TGTGCTGGGTGATAATTGTCTTATTGTGTCCACAGACAGCATTTGAAAGA
TCTTGATAGACttttttctccatttctttTCATTCACAGGTTTCACAACC
TTCCTTGGTATCTTAGTGCTCATTTTCGGACAGTCCGAAATTTTCCggat
tttcttcaaaatggtTTTCGGAATCGTCGTTTTGGGATTGTTAAATGGAT
TGCTCTTCCTTCCTGTCTATCTATCATGTAAGTTGCTCAGTTTCTAGTCT
AGGATAGGGGGTCTGTCAATCCTCAGTTTAGAGTGACAGAAAATGAGCTG
TAACTTTAAGATTTAATACACATCCGTTTTCCTTGAGATGTGTGTTTTTC
TTATCATAACTCAAAAAACAATGGTTAACCCTTTAAGTCTCATTTTAGGG
GAATAAAAGCAATGATGGAAAGGTGCCTAGTAGTAAAACTTAAAATTAAT
TCGCTAGAGGATAGtatcaagtaaagcagggccaaatttggatgttcttg
gatcactcgttgaccaaaaatgatcaaaaaacggtcaaaatctcaaaaat
ctcgatttttgtcaaatttttccattttttgactttttggcttaaaatct
cgctggaaagacttactattgatttttttggtataaccatgaagcccaat
ctaATTTTTACGAGTTAGactaaaaatgatgatttttaaCTCAATCTGGA
CATTANagtggatttttgtcaaaatttttccattttttgactttttagct
taaaatctcgctggaaagacttacttcgccctcctatatagcccatgtcc
gATATAcccgacattggcacttaaagggttaatgtaAAACTTTTTGCTTA
GACTATAAATCTAGATACGGGGATGCaccaaattctttttttttcctttt
tgtaaaTAAGCAAACCAAATACAGTGCTATTCGAAcctttctttaactcg
aacttaTTCTGAGTAAACCCTCGTAAATTGCATTCCATGATTCGATTCGA
TGACCCTTCTTAGTTTATTAATGTTATACAATGTTGGGATTATCTGACTT
TCTCGAATCTTCGTTCTTCTTTCTTCAGTGTTTGTTCGAAACAAGGTAGA
TATTCGCCATACTTCAAACTACAATCAAGATGAACGCCTGCCGCCCTCGG
GTGGTGAAAAAAGACCTTCAAAGAAGATGAAAGAAATGAACAATAAAGTa
ggcgatgacgtcatcgaaaatcCTCATTCACCTGAATTTAAACCTGTAAA
TGGTTCAATCAAAAGTAACGATTTGGTGTAACAATGCACGAACTATGGGT
TTGAAAGAATCCTTAAATTTCAGTTTCCCACATTACTGAAGGAGCTGACT
TCACTTTTCATATACTGCATGTGTTCTTTTTTCATAAGCAAGtgtcccta
tatcaggctcgcatcacattatgcttagcattttTGGTACCAAAagctga
gcctgcatatgcttataaacgttatgtttatagaaaaaaaaatttatata
gcTATGTAAAGATTTTTCTAACcgatttttttggaatatttattTCGTTT
TTGTACGGTTTTATTTAGATTCATGTAAATACTTGTTTTTGTACAGAAAT
GACCCTCAACATGTAAATAGTGCCTTTAAATCACATTCAGTTAATCTTCA
ATtcaccttttcataaatttgtcTGACACGCTTAAAACCTTCTCAATTTG
TATAGGCTTTCAACGATGTAACAGACCAAGTGCTGAGCTcacccagctag
cacacaatgttgtttcgacgtctatctaatgttcacaacgttcGTATAAC
GTTAgaagaacgttaaaacaacgttgtgtgtcagcccAGTTATTGCAGAC
GTTGGGACAGTCTGATTCTCTGACCtctacaaaattgaaaatagcaTAAA
GAGCTCTGATTTGCAATCGAGTACATTAACGGCAGTCTAGGGCTGCATTG
gctaaaagaaaaaacacgTGCAGAAGATTTATAGTTTGTTGTATTtttct
tctcaattttaaaaaatatattcctAGAATTTATAATTAAGtaacataaa
atgaaaatttcagtcATAAGTCTGGCTGCCAGATCTGCAGGAAAACAAAT
TTCGAAGCCTTCTTCTAAATCTTTTGAATTTCCCTCCTTTCTGAGGGCGG
CGAGGGGCGTCATTGGATTCGAAACTGTCAACAGAAGGCGGACAGTAAGT
TACTTCCATACGGTATGAGGTATCACTAGAACTGGAACTACACTGAATGG
TGCTTGAGATGGGCGGGCGTGGCACAAATGGCTCCATTGGGGTGGGTTCG
AGGGCGGGGTTATCATCTCTCACATGGTGAATGACAACGCTCTCTTCATT
CAAAAGAGCTTTCTTCTTTCGATGTTCTTCGACCAGCTTTGGTATTTGGC
CTGGCTTATATTCGGGAAAACCCTTCCGCGCCAATATTTCATTCTTTGCT
TTATAACAAGAGCCGGAATCCTGTTTTTGGGAGCAACTGACAGTAGGTGT
AACACAAGATGACTCTTTAGCAATAGGGAAAGAGAGTTTGTTTTTGTCGA
AAGCAGTATTTGGCTTTTCTGAACAAGTCTCGTCACCAGAGCTAGAGCCA
GGACTCTGCGGTATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008575XLOC_008575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015326-exon-sc0000210-1491911889:260296..260331TCONS_00015326-exon-sc0000210-1491911889:260296..260331Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:260296..260331TCONS_00015326-exon-sc0000210-1510915933:260296..260331Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:260296..260331TCONS_00015326-exon-sc0000210-1575043694:260296..260331Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:260616..260709TCONS_00015326-exon-sc0000210-1491911889:260616..260709Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:260616..260709TCONS_00015326-exon-sc0000210-1510915933:260616..260709Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:260616..260709TCONS_00015326-exon-sc0000210-1575043694:260616..260709Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:267280..268233TCONS_00015326-exon-sc0000210-1491911889:267280..268233Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:267280..268233TCONS_00015326-exon-sc0000210-1510915933:267280..268233Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:267280..268233TCONS_00015326-exon-sc0000210-1575043694:267280..268233Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:268887..269036TCONS_00015326-exon-sc0000210-1491911889:268887..269036Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:268887..269036TCONS_00015326-exon-sc0000210-1510915933:268887..269036Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:268887..269036TCONS_00015326-exon-sc0000210-1575043694:268887..269036Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:270034..270365TCONS_00015326-exon-sc0000210-1491911889:270034..270365Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:270034..270365TCONS_00015326-exon-sc0000210-1510915933:270034..270365Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:270034..270365TCONS_00015326-exon-sc0000210-1575043694:270034..270365Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:270950..271682TCONS_00015326-exon-sc0000210-1491911889:270950..271682Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:270950..271682TCONS_00015326-exon-sc0000210-1510915933:270950..271682Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:270950..271682TCONS_00015326-exon-sc0000210-1575043694:270950..271682Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:272119..272334TCONS_00015326-exon-sc0000210-1491911889:272119..272334Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:272119..272334TCONS_00015326-exon-sc0000210-1510915933:272119..272334Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:272119..272334TCONS_00015326-exon-sc0000210-1575043694:272119..272334Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:273035..273172TCONS_00015326-exon-sc0000210-1491911889:273035..273172Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:273035..273172TCONS_00015326-exon-sc0000210-1510915933:273035..273172Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:273035..273172TCONS_00015326-exon-sc0000210-1575043694:273035..273172Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1491911889:274024..275562TCONS_00015326-exon-sc0000210-1491911889:274024..275562Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1510915933:274024..275562TCONS_00015326-exon-sc0000210-1510915933:274024..275562Clytia hemisphaericaexon
TCONS_00015326-exon-sc0000210-1575043694:274024..275562TCONS_00015326-exon-sc0000210-1575043694:274024..275562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:260296..275562 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.98531e-09	5.78045e-09	1.28419e-09	3.58185e-09	1.63092e-07	4.56456e-08	0.977969	2.03275	5.6303e-05	0.929806	0.432205	0.336778	1.71778	0.449712	3.96415e-09	0.142876	1.82372e-07	3.76472e-08	2.46341e-07	0.690529	0.229593	0.348616	0.27695	0.953702	1.41167e-07	7.88216e-08	4.01722e-08	0.161222	2.27795e-08	2.9943e-08
Blast
[Close]
BLAST of TCONS_00015326 vs. Swiss-Prot (Human)
Match: PTHD3 (Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 5.595e-25
Identity = 111/381 (29.13%), Postives = 180/381 (47.24%), Query Frame = 1 
Query: 1015 LMCTFATVVLFRLRNRVNGHVTVGFAGIGCIALGIGSGFGMVMLSGQYFVAFVGTLPFLVLGVGIDDMFIILDALD--SLPSDFTGKNRLQKTMAKVGASVTMTTVTDVIAFAISSSTDFPAIRYFCMYALTSILFAYLLIMTVFLAALALDIKR-------IEVGNWDW-----FCCKKQKDNNPWSEEDMNTLSKTVMKKWAEFLMKTPVRIXXXXXXXXXXAAGIYGTTQLAEKFDIRQLAPDGSYFIDYLDNERMHYP-VGFQVSIINDDENFDYTNPRLQGEYNYLSNICKENSYMKKT-TVNWLQA---FLESNEYKSNPNMTFYQRLGLFLKEFPEYGRDIKWHTENEQRIRASKIQCQDLDTDSWDFRKKAML 2100
            L+  FA    FR     N      F  I    L + SGFG+++  G  FV  V   PFL+LGVG+DDMFI++ A    +L  D   + R+    +K   S+T+TT+T+++A      + F +++ FC+Y   ++LF Y   +T F A +ALD KR       ++  +  W     FCC            D++ +S      +  FL ++  +  VVF+ ++ + + IYG   + E  D+R LA D SY   Y + E  ++   G +V +I   +  DY +  ++ +    + I ++N Y+ K  T  WL A   +L+ N    N   TF   +  FL  FP +  DI   + NE       IQ  D+ + +   +KK +L
Sbjct:  393 LIILFAVTSCFRFDCIRNKMCVAAFGVISAF-LAVVSGFGLLLHIGVPFVIIVANSPFLILGVGVDDMFIMISAWHKTNLADDI--RERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISLFFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIV-TKKVDYWDKDVRQKLENCTKIFEKNVYVDKNLTEFWLDAYVQYLKGNSQDPNEKNTFMNNIPDFLSNFPNFQHDINISSSNEIISSRGFIQTTDVSSSA---KKKILL 766
The following BLAST results are available for this feature:
BLAST of TCONS_00015326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTHD35.595e-2529.13Patched domain-containing protein 3 OS=Homo sapien... [more]
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