|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015310 ID=TCONS_00015310|Name=TCONS_00015310|organism=Clytia hemisphaerica|type=transcript|length=1863bp
ATAAAAAACGAACTAAAGGACACTGGGTTTGAGTTTGAGTTCATAAAGAT
TGTTGCCAAACGAGTCTTCTTGATTCTCAAGTGGGTGGAATTAAGCTTCT
CAAAGTAGCATGTAGCAATAAGTCTGTAAGTATAAGTGTTCTTTCTCAGA
CCAACGTTTCCGGATCATTGTCTTTAACCGGGTAGTCTTCAGTTACGGAA
ATGACCCGTTCTCCTTTAACAGCTCCGTGCGAAAGACCCCACGAAATATC
AGTGAAGTAATACACACAGTATAAGAAATTATATACTGTGATGAAAGGGG
AAACAAATTTACTGACAACGCTACCGGTGAACAAGAACAAACCATACTTC
TTTAACGTGATAGCGAagaaaaggaaataaaaataCGGGATACCGAAAAC
AAGAACCATGAGGATAATTTGAACCAATTGGAGATCAGTGATATGACTCA
TCAAAAGGGCGGTACTGACTAGCCTTGTGACGCATGTGTGAATACGGAAT
AAGTCTATAGCAGCTAAAACTCGGACAAACCAAGGGATATTTGTACCAGT
AAGGAGAAAGAAATATCCGGTGATGGCGTTAGATGTCCACCGCTTACGTT
GTGAACGGAAATGTTTGAAGGTTTGCGGCGGGACGGTAAAACAGCGTGCT
TCACCATCAGTGACCAGGCGGACGTCTTTGGAATGCTGGAGGACGCAATT
AGTGTAACGTCGGTCGGTTCCCTGTAGCCGGTTCTTGACTTGAAAGATAT
GTGTACGGCTTGGTAGCTTCTGATAGCGCGTCGAGGCTTCAATGATACAA
TCATGCGTGATATTGACCATATTGGTACAGCCTGGCATACAGGTTGGTTT
TCCCCACATTGATTCTGTCAAACGTCTGATAAGCTGTCCGTAGTAATACT
GGAAACCTTGGAAGAGTGACCAGAAACGGTATTTCTCTGGAACCATAACA
ATTCCAGTTACGCCGGATATTTTCGGGTTTTTTTGCATGATTTTGCTATG
GCGACGTAATGTGTTTGATGAAATAACCGAATCAGCATCagtatgaaaaa
tgaaatggaaCTCCGTGATGTTATAAAATTTGAGCAGAACTTGGCGAATT
TCCGTGAAAGTTGAATCAACAAAGATATTATCAACGAGGATCAAGGAATC
TTTTTTACCAGCATTTTCATGTTTGAGCATTAAAATTAAATCATATCCGT
TGTACGTACAGAAGAAAATACTGACTTGATTTAGTTTTTGTTTATAAGTC
TTATATTTGAAGGATTCAATTAAAATCATGCTTGAAAATATCTCACCAAA
ACGTAGATAGCCGTCACAAACCATTACAATTCTCCTGTGTACAAGCTTTG
TTTCCTCTTGCGCGATTAGCGAATCCAGCGTAGCGGTCACTTCTTTAGCT
TCTTCTTTGTAGGTAGGGATGACACacaaaacattacgtaatgcttcgtC
ATCATCCTCATCCGCTTGCATCCGCACGCATGGCTTGAAAAGAATAcgga
tcaaaacaaagaaagtgtctCTGAAATGAGTAACGCCCACCACCAGCATA
TTGATAACGCCCACCGGTGAAGTAACACCCAAGGTGATTAAACATCCATT
TAATAGAACAATGAAAAGTAGATACAAGAAATGCTGCAAATTCATCTTTT
GGtcaaaaaatatccaaattgTTTCTTAGTGCTAGTAGCTTGATGCTAAT
TTCTTAGTGCAcaaattctttcttttctttctccaCCAAGTACAACAGAA
CTCCCACAGAGagatttaaaatcaaaagttaaGAGTCAAAATTTTCGTGG
ATTTATCTTCATGCAAACATTGAATTACTTGACTACTGTGTCATTTCCCC
TGTAAGTACTTAC Run BLAST on NCBI protein sequence of TCONS_00015310-protein >TCONS_00015310-protein ID=TCONS_00015310-protein|Name=TCONS_00015310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=499bp
MNLQHFLYLLFIVLLNGCLITLGVTSPVGVINMLVVGVTHFRDTFFVLIR
ILFKPCVRMQADEDDDEALRNVLCVIPTYKEEAKEVTATLDSLIAQEETK
LVHRRIVMVCDGYLRFGEIFSSMILIESFKYKTYKQKLNQVSIFFCTYNG
YDLILMLKHENAGKKDSLILVDNIFVDSTFTEIRQVLLKFYNITEFHFIF
HTDADSVISSNTLRRHSKIMQKNPKISGVTGIVMVPEKYRFWSLFQGFQY
YYGQLIRRLTESMWGKPTCMPGCTNMVNITHDCIIEASTRYQKLPSRTHI
FQVKNRLQGTDRRYTNCVLQHSKDVRLVTDGEARCFTVPPQTFKHFRSQR
KRWTSNAITGYFFLLTGTNIPWFVRVLAAIDLFRIHTCVTRLVSTALLMS
HITDLQLVQIILMVLVFGIPYFYFLFFAITLKKYGLFLFTGSVVSKFVSP
FITVYNFLYCVYYFTDISWGLSHGAVKGERVISVTEDYPVKDNDPETLV Run BLAST on NCBI transcript from alignment at sc0000208:250455..252317 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015310 ID=TCONS_00015310|Name=TCONS_00015310|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0000208:250455..252317 (Clytia hemisphaerica)
GTAAGTACTTACAGGGGAAATGACACAGTAGTCAAGTAATTCAATGTTTG
CATGAAGATAAATCCACGAAAATTTTGACTCttaacttttgattttaaat
ctCTCTGTGGGAGTTCTGTTGTACTTGGtggagaaagaaaagaaagaatt
tgTGCACTAAGAAATTAGCATCAAGCTACTAGCACTAAGAAAcaatttgg
atattttttgaCCAAAAGATGAATTTGCAGCATTTCTTGTATCTACTTTT
CATTGTTCTATTAAATGGATGTTTAATCACCTTGGGTGTTACTTCACCGG
TGGGCGTTATCAATATGCTGGTGGTGGGCGTTACTCATTTCAGagacact
ttctttgttttgatccgTATTCTTTTCAAGCCATGCGTGCGGATGCAAGC
GGATGAGGATGATGacgaagcattacgtaatgttttgtGTGTCATCCCTA
CCTACAAAGAAGAAGCTAAAGAAGTGACCGCTACGCTGGATTCGCTAATC
GCGCAAGAGGAAACAAAGCTTGTACACAGGAGAATTGTAATGGTTTGTGA
CGGCTATCTACGTTTTGGTGAGATATTTTCAAGCATGATTTTAATTGAAT
CCTTCAAATATAAGACTTATAAACAAAAACTAAATCAAGTCAGTATTTTC
TTCTGTACGTACAACGGATATGATTTAATTTTAATGCTCAAACATGAAAA
TGCTGGTAAAAAAGATTCCTTGATCCTCGTTGATAATATCTTTGTTGATT
CAACTTTCACGGAAATTCGCCAAGTTCTGCTCAAATTTTATAACATCACG
GAGttccatttcatttttcatactGATGCTGATTCGGTTATTTCATCAAA
CACATTACGTCGCCATAGCAAAATCATGCAAAAAAACCCGAAAATATCCG
GCGTAACTGGAATTGTTATGGTTCCAGAGAAATACCGTTTCTGGTCACTC
TTCCAAGGTTTCCAGTATTACTACGGACAGCTTATCAGACGTTTGACAGA
ATCAATGTGGGGAAAACCAACCTGTATGCCAGGCTGTACCAATATGGTCA
ATATCACGCATGATTGTATCATTGAAGCCTCGACGCGCTATCAGAAGCTA
CCAAGCCGTACACATATCTTTCAAGTCAAGAACCGGCTACAGGGAACCGA
CCGACGTTACACTAATTGCGTCCTCCAGCATTCCAAAGACGTCCGCCTGG
TCACTGATGGTGAAGCACGCTGTTTTACCGTCCCGCCGCAAACCTTCAAA
CATTTCCGTTCACAACGTAAGCGGTGGACATCTAACGCCATCACCGGATA
TTTCTTTCTCCTTACTGGTACAAATATCCCTTGGTTTGTCCGAGTTTTAG
CTGCTATAGACTTATTCCGTATTCACACATGCGTCACAAGGCTAGTCAGT
ACCGCCCTTTTGATGAGTCATATCACTGATCTCCAATTGGTTCAAATTAT
CCTCATGGTTCTTGTTTTCGGTATCCCGtatttttatttccttttctTCG
CTATCACGTTAAAGAAGTATGGTTTGTTCTTGTTCACCGGTAGCGTTGTC
AGTAAATTTGTTTCCCCTTTCATCACAGTATATAATTTCTTATACTGTGT
GTATTACTTCACTGATATTTCGTGGGGTCTTTCGCACGGAGCTGTTAAAG
GAGAACGGGTCATTTCCGTAACTGAAGACTACCCGGTTAAAGACAATGAT
CCGGAAACGTTGGTCTGAGAAAGAACACTTATACTTACAGACTTATTGCT
ACATGCTACTTTGAGAAGCTTAATTCCACCCACTTGAGAATCAAGAAGAC
TCGTTTGGCAACAATCTTTATGAACTCAAACTCAAACCCAGTGTCCTTTA
GTTCGTTTTTTAT Coding sequence (CDS) from alignment at sc0000208:250455..252317 >TCONS_00015310 ID=TCONS_00015310|Name=TCONS_00015310|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000208:250455..252317 (Clytia hemisphaerica)
ATGAATTTGCAGCATTTCTTGTATCTACTTTTCATTGTTCTATTAAATGG
ATGTTTAATCACCTTGGGTGTTACTTCACCGGTGGGCGTTATCAATATGC
TGGTGGTGGGCGTTACTCATTTCAGagacactttctttgttttgatccgT
ATTCTTTTCAAGCCATGCGTGCGGATGCAAGCGGATGAGGATGATGacga
agcattacgtaatgttttgtGTGTCATCCCTACCTACAAAGAAGAAGCTA
AAGAAGTGACCGCTACGCTGGATTCGCTAATCGCGCAAGAGGAAACAAAG
CTTGTACACAGGAGAATTGTAATGGTTTGTGACGGCTATCTACGTTTTGG
TGAGATATTTTCAAGCATGATTTTAATTGAATCCTTCAAATATAAGACTT
ATAAACAAAAACTAAATCAAGTCAGTATTTTCTTCTGTACGTACAACGGA
TATGATTTAATTTTAATGCTCAAACATGAAAATGCTGGTAAAAAAGATTC
CTTGATCCTCGTTGATAATATCTTTGTTGATTCAACTTTCACGGAAATTC
GCCAAGTTCTGCTCAAATTTTATAACATCACGGAGttccatttcattttt
catactGATGCTGATTCGGTTATTTCATCAAACACATTACGTCGCCATAG
CAAAATCATGCAAAAAAACCCGAAAATATCCGGCGTAACTGGAATTGTTA
TGGTTCCAGAGAAATACCGTTTCTGGTCACTCTTCCAAGGTTTCCAGTAT
TACTACGGACAGCTTATCAGACGTTTGACAGAATCAATGTGGGGAAAACC
AACCTGTATGCCAGGCTGTACCAATATGGTCAATATCACGCATGATTGTA
TCATTGAAGCCTCGACGCGCTATCAGAAGCTACCAAGCCGTACACATATC
TTTCAAGTCAAGAACCGGCTACAGGGAACCGACCGACGTTACACTAATTG
CGTCCTCCAGCATTCCAAAGACGTCCGCCTGGTCACTGATGGTGAAGCAC
GCTGTTTTACCGTCCCGCCGCAAACCTTCAAACATTTCCGTTCACAACGT
AAGCGGTGGACATCTAACGCCATCACCGGATATTTCTTTCTCCTTACTGG
TACAAATATCCCTTGGTTTGTCCGAGTTTTAGCTGCTATAGACTTATTCC
GTATTCACACATGCGTCACAAGGCTAGTCAGTACCGCCCTTTTGATGAGT
CATATCACTGATCTCCAATTGGTTCAAATTATCCTCATGGTTCTTGTTTT
CGGTATCCCGtatttttatttccttttctTCGCTATCACGTTAAAGAAGT
ATGGTTTGTTCTTGTTCACCGGTAGCGTTGTCAGTAAATTTGTTTCCCCT
TTCATCACAGTATATAATTTCTTATACTGTGTGTATTACTTCACTGATAT
TTCGTGGGGTCTTTCGCACGGAGCTGTTAAAGGAGAACGGGTCATTTCCG
TAACTGAAGACTACCCGGTTAAAGACAATGATCCGGAAACGTTGGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015310-exon-sc0000208-1491911889:250455..252317 | TCONS_00015310-exon-sc0000208-1491911889:250455..252317 | Clytia hemisphaerica | exon |
| TCONS_00015310-exon-sc0000208-1510915933:250455..252317 | TCONS_00015310-exon-sc0000208-1510915933:250455..252317 | Clytia hemisphaerica | exon |
| TCONS_00015310-exon-sc0000208-1575043694:250455..252317 | TCONS_00015310-exon-sc0000208-1575043694:250455..252317 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000208 | supercontig | sc0000208:250455..252317 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029044 | Nucleotide-diphossugar_trans |
Blast
The following BLAST results are available for this feature:
|
