TCONS_00015309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015309
Unique NameTCONS_00015309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015309 ID=TCONS_00015309|Name=TCONS_00015309|organism=Clytia hemisphaerica|type=transcript|length=300bp
tgaaaaaagagtgcacacttatcgtgaatagactttagaaagGCTTAAAG
GATTTTCCGTCAGtgaataaaaattttcacagtgaATTTGTGAACTGAAT
TTTCGAAAAGGCGTCCTTTTATAACGTTAAATTATCAAATGcgttttgga
caatttttcacGATTTTTAATATGTACATTTTATTcatagattttttcta
tttattaTTAACAATTTACTTTAGTTGAAAATAGCTGACCTGATTTGTAA
TTTCAACGGAATTGGCTTCAAAGCAAAGATGAGTATCTTTTTAAAGCCGG
Run BLAST on NCBI

transcript from alignment at sc0000208:224561..224860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015309 ID=TCONS_00015309|Name=TCONS_00015309|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0000208:224561..224860 (Clytia hemisphaerica)
CCGGCTTTAAAAAGATACTCATCTTTGCTTTGAAGCCAATTCCGTTGAAA
TTACAAATCAGGTCAGCTATTTTCAACTAAAGTAAATTGTTAAtaataaa
tagaaaaaatctatgAATAAAATGTACATATTAAAAATCgtgaaaaattg
tccaaaacgCATTTGATAATTTAACGTTATAAAAGGACGCCTTTTCGAAA
ATTCAGTTCACAAATtcactgtgaaaatttttattcaCTGACGGAAAATC
CTTTAAGCctttctaaagtctattcacgataagtgtgcactcttttttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008559XLOC_008559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015309-exon-sc0000208-1491911889:224561..224860TCONS_00015309-exon-sc0000208-1491911889:224561..224860Clytia hemisphaericaexon
TCONS_00015309-exon-sc0000208-1510915933:224561..224860TCONS_00015309-exon-sc0000208-1510915933:224561..224860Clytia hemisphaericaexon
TCONS_00015309-exon-sc0000208-1575043694:224561..224860TCONS_00015309-exon-sc0000208-1575043694:224561..224860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:224561..224860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.415492	0	0.449921	0.495917	0.534959	0.414882	1.04249	1.98392	0	0	0	0.559019	0.529133	0	0.749863	0.508756	0.595135	0.62899	0	1.76265	0.830979	0.569555	0.453372	2.56714	2.59861	1.12715	1.18564	1.13946	2.67122	1.71355
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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