TCONS_00015297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015297
Unique NameTCONS_00015297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015297 ID=TCONS_00015297|Name=TCONS_00015297|organism=Clytia hemisphaerica|type=transcript|length=883bp
CGAGGATTAACTCAACTCTTCCTGGAAGTTCACCCAACCAAAGTGCAACA
GTAACAGCTGGAACACCACCAGGCAGAACACCACCAGGTAGCACTCATCA
AAGCAGGATTGTTGATGGATCACCTTTTCTTCGCGAAACATTCAGCCCGA
GGATTAACTCAACTCTTCCTGGAGGTTCACCCAACCGTTGTGCTATTGAA
CGACTGCAGCGACCAACAAAAGAGGCAAATTCCTTAGTTGGGCAGCAATC
TTTGTCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCA
TTGACATGCAGTTCCCAATGAGTGAAGCAAgatATCAAAAGCTCATGCTT
GAGCGGATGCTTGAGATTTCAAAGTGTCAAGAGGAAATCAGAAGTAGGCT
TGTCCTGTTGGAGAGTGGTACTGCTGCTGGTCCATCTCGAGCGGTGTCAG
AGAAGGCAAAGTTATTACCCCGTCATCCTTTCACCAACGTAAATGACTTT
GAAGAATGGGAAAAAGATCTAGACGATGGTCAAGCAAATCAATTAACCAA
AGAGTTTGTCAGAATTGGAGGCAAAGACAAGATGGCATTAATGCGTAGTT
GCATCGATAGTTTAATGGATCGAACAACCCAGTCAAAATTTAACTTGGCT
GCTTCTGTTAAAcgaaatattcgaaaaaagaagCCGTTTGGCAACACAAA
GACGTTCAAATGTCTGATTGATGCAGGGCAAAAGTTATTCAGGAAGGTCA
ATTCCAAAGGCGTTGCGAAAGGCCCAACACAGCAAGATCTGCGAACTTGC
ATTGGAAACGTCTTCAAGCATGCGAAGCCAGGAGAAGAGGAGAAGATCGA
CGACAATGAACCGGCGAACGACGAACGTGAACG
Run BLAST on NCBI

transcript from alignment at sc0000208:413241..416160-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015297 ID=TCONS_00015297|Name=TCONS_00015297|organism=Clytia hemisphaerica|type=transcript|length=2920bp|location=Sequence derived from alignment at sc0000208:413241..416160- (Clytia hemisphaerica)
CGAGGATTAACTCAACTCTTCCTGGAAGTTCACCCAACCAAAGTGCAACA
GTAACAGCTGGAACACCACCAGGCAGAACACCACCAGGTAGCACTCATCA
AAGCAGGATTGTTGATGGATCACCTTTTCTTCGCGAAACATTCAGCCCGA
GGATTAACTCAACTCTTCCTGGAGGTTCACCCAACCGTTGTGGTAATATT
TGTGGTACTCTCACTATTACCCCTGTTTTCTTACCACATCTCTCCCTCCC
TGAGAGTACTAATCCATGTGAAAATTCATGGTGGAAAATTTTTTTGTCAG
GGAGTAGGGGCATAGTGCATAGTGTGTGGGACTTGGAAAGTCAGCATTCA
GGTGGGAGTTTCTCGAGTGGTGGGACCTGAAATTTTAGGTGGAGCCTTGA
ACCCCTGCACACTGTGGGGGGGGGGGTAAATTTGCTCATTAGAAATTTTG
TAATTTGTAGTTTGAATTTACATTATTGTTCGTTCAAAAGTTACGCAAAT
GACGTAAAAACAGGGTTTTTGGTGGCTTCGGCTAATTCAATAATATTAAA
TGAAACTATATTATTCTGGAGATTCGCACCATGATGTTTGTTGAATATGA
ATTTCATTCAAACCTTTTTCTCTCATAATAAGCAGATATTCTCTGATTAT
CAATTTAGCTATTGAACGACTGCAGCGACCAACAAAAGAGGCAAATTCCT
TAGTTGGGCAGCAATCTTTGTGTAAGTTTCTGTCTTTTTTATTCAAAATA
TTTTTTTGCAACTTAGAACCCTGGGGGATTTCTATACAACAGCTTTCAAA
ATTGGACCCTTACAGTGCAGCTTATAATCGTTTAAAACGTACCCTTACAG
TGCATTCCATTCTTGGTGCAGCATAAAACAATGTCTTGAAAATTCTCGTC
CTTAAAATCAGCCTTGGCTATATCAGTAAAATTGTCAAAAGTATAAAATT
TTGGGGTTTTTAAAGTAAAAACACATTAATTAGAACAATTTTTACGAAGC
AGATAAATGGAACAGGGGGCACTATTAAAATCTCAGACATATATGAGTAC
TANACATTAATTAGAACAATTTTGACGAAGCAGATAAATGGAACAGGGGG
TACTATTAAAATCTCAGACATGAGTACTAAAAGGGTTCTTCGGAATGAAA
CTGATTCTTCTCTTGACTCTCTCGTTCTCATTTCGTTGGTAGGTAACACA
AAAAGGCATTTTAGTACTGACCCCTACACCATCCCTTCCCTGCTGTTGAG
TCAAATAACTTGTTTGTTTCTACACTCTAACAAAAACAAGGTCACACTTT
AAATGTTATTCTGTTTTAGCTTCCCATGACAAGGACCATCCACATCCCTT
GTCAGCTGAAATCATTGACATGCAGTTCCCAATGAGTGAAGCAAGTGAGT
AACTTTACATGCCTTATAGTTTGGTCTTAAACTTGTTCTTTTAACTTTTA
TTTTTCGAGTAGGGACCATTCAAAAAAATTTGTACGCTCAGTAGGATAAG
GGTCAGCCTGAAAGTATCTAAAATATTCCTGTTGTGATTTAATCCTCTTT
GATAATTTTATTTTCAGGATATCAAAAGCTCATGCTTGAGCGGATGCTTG
AGATTTCAAAGTGTCAAGAGGAAATCAGAAGTAGGCTTGTCCTGTTGGAG
AGTGGTACTGCTGCTGGTCCATCTCGAGCGGTGTCAGAGAAGGCAAAGTT
ATTACCCCGTCATCCTTTCACCAACGTAAATGACTTTGAAGAATGGGAAA
AAGATCTAGACGATGGTCAAGCAAATCAATTAGTGAGTATTTCCTGATAC
ACTCCTTTATCTATTTATTGTACACTTGCGTGCGTGTATGATCGCAGAGA
CCATGGTTTTCAGTCTGAAAGAATAGCCCAGTTTTTGGCAATGAAAGTTT
TAATATGTGCACAGTTNATACACTCCTTTATCTATTTTTTGTACACTTGC
GTGTGTGTATGATCGGATTCAAATACTTTAGGATTAAATTTTCATTGATA
AAAGGCCTAAATCTTTGAGAGACAAAGTTGAAGACGCAGACCATGGTTTT
CAGTCTGAAAGAATAGCCCAGTTTTTGGCAATAAAAGATTTAATATGTGC
ACAGTTTGTTAAATTATAATCGAACCACACTTTTTCTGCTAGACCAAAGA
GTTTGTCAGAATTGGAGGCAAAGACAAGATGGCATTAATGCGTAGTTGCA
TCGATAGGTAATTTTGCAAAATAGTTTTGAAAAGTTTTTAACAGAGAGAC
CGTTCAAAATTTGAACCAAAGTTTAATAAGCTATTCGTCCTTTGGTCGAA
ATCATCATTAAACTTTGGCAGAATAAATGAATCGAAATTGTTTCAGTGTG
ATGATCACAATTAAAGTCTTATGTTTGTAGATATGGAGACTGCAGTACAA
ATAGTGAAGATCTTATTTAGTTCTGTTCATGATTTTTCGACCAGACATTT
TGAATAAAATCTCTGATTCATTGTATAAACTAAATAATAACACTATCTTT
TTTAGTTTAATGGATCGAACAACCCAGTCAAAATTTAACTTGGCTGCTTC
TGTTAAACGAAATATTCGAAAAAAGAAGCCGTTTGGCAACACAAAGACGT
TCAAATGTCTGATTGGTAAGTTCCATGCTTCATCAATATAGTACACACCC
AGCGAACGGGCAACGTCATCTAACGTAACGTCGTTTCTATAGATAATTTG
TAAGGTTCTTAAGGGAATGAGGATAGTGACTACTAATGACTTATTTTTTT
GTTACAGATGCAGGGCAAAAGTTATTCAGGAAGGTCAATTCCAAAGGCGT
TGCGAAAGGCCCAACACAGCAAGATCTGCGAACTTGCATTGGAAACGTCT
TCAAGCATGCGAAGCCAGGAGAAGAGGAGAAGATCGACGACAATGAACCG
GCGAACGACGAACGTGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008548XLOC_008548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015297-exon-sc0000208-1575043694:415969..416160TCONS_00015297-exon-sc0000208-1575043694:415969..416160Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:415440..415502TCONS_00015297-exon-sc0000208-1575043694:415440..415502Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:414767..414841TCONS_00015297-exon-sc0000208-1575043694:414767..414841Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:414379..414593TCONS_00015297-exon-sc0000208-1575043694:414379..414593Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:413954..414018TCONS_00015297-exon-sc0000208-1575043694:413954..414018Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:413546..413655TCONS_00015297-exon-sc0000208-1575043694:413546..413655Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1575043694:413241..413403TCONS_00015297-exon-sc0000208-1575043694:413241..413403Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:415969..416160TCONS_00015297-exon-sc0000208-1510915933:415969..416160Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:415440..415502TCONS_00015297-exon-sc0000208-1510915933:415440..415502Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:414767..414841TCONS_00015297-exon-sc0000208-1510915933:414767..414841Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:414379..414593TCONS_00015297-exon-sc0000208-1510915933:414379..414593Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:413954..414018TCONS_00015297-exon-sc0000208-1510915933:413954..414018Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:413546..413655TCONS_00015297-exon-sc0000208-1510915933:413546..413655Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1510915933:413241..413403TCONS_00015297-exon-sc0000208-1510915933:413241..413403Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:415969..416160TCONS_00015297-exon-sc0000208-1491911889:415969..416160Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:415440..415502TCONS_00015297-exon-sc0000208-1491911889:415440..415502Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:414767..414841TCONS_00015297-exon-sc0000208-1491911889:414767..414841Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:414379..414593TCONS_00015297-exon-sc0000208-1491911889:414379..414593Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:413954..414018TCONS_00015297-exon-sc0000208-1491911889:413954..414018Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:413546..413655TCONS_00015297-exon-sc0000208-1491911889:413546..413655Clytia hemisphaericaexon
TCONS_00015297-exon-sc0000208-1491911889:413241..413403TCONS_00015297-exon-sc0000208-1491911889:413241..413403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:413241..416160 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0346877	0	0	0	0	0	2.22898e-05	0	0.220055	0	0	0.167097	0.175083	0	0.76346	0.441676	1.64832	1.30154	0.554763	0.00907095	0	0.907061	0	0.67738	0.748915	1.22692	0	0	0.595285	0.213257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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