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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015284 ID=TCONS_00015284|Name=TCONS_00015284|organism=Clytia hemisphaerica|type=transcript|length=999bp
CTAAATCAAGCTATAGTCCATTAAGTTGGGTGGGTTTGCAGTATAAAAAC
GTGGAGTTTGGCATTTCAAATTCATCTTGCATTCTGAAGACAACAAAATA
ActtcaagaagaagaagaaaacaacaaaaatgaagGCTTTCATTCTCATC
ACCCTCTTGGCTGCTGCCTACTCTCTCGAAGTTGGAACCCAAACTGGTAC
CACACCACCAGCTGTCCCATGCCCAGACTCCTTGTGCAAAGGAAAAGCTG
ACGGAAACTTCGAATATCACTACTATGGCCGATACAGAGCCAACTACTTC
CTCCAATGCTCAAACGGATTAGCTTCATGCCAACCATGCTTCCCATTGTC
TTTGGAATTCAGCGAACCATGTAACCAATGTTTGTACAACCGAAAAGACG
AATGTGTCAGCACACAACCATGGGAACCAGCAACCACCTTCGCTTGCCCA
GACAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACATCAAAGACGA
TCACCAACCACGACAATACGTTGCTTGCTTCCACGGACAAACTGTCGGAT
GTATCGCTTGCCCATCAGGACTTTTGTTCAACGAGGAATGGAACGCCTGT
TTGTACGAAGGAAAATACAAGACTGAACCAGAATCACCACCAAAACACTA
AACGGTGTGTTAATCAAAATCGATTCAAATCACAAGAAAGATCTAAATGG
CGATCTAAATTCACAAtgaactaaaaatgaaaacactttaTTCAGAGCAT
TTTAAACtctcaagttttcaaaattttacgcaTCCTTCTCTCGAAGGATT
GTTTTTATTCTGTCACATTGTATATTTGAGTATTTAAATACAATAAAAAC
TCTCTCTCTTGAATCAAATGGTCTTCTTAATAATATTTTCGTGCTTACCC
TTAAAGATATGTACTAGTAGAGACAGGTTTTTCCTCGAAAGGGGTTACTA
GTGTTGGAGAATGTCGGGTATGTGTGAACATGAAAGCTTCCGAAAACTT Run BLAST on NCBI protein sequence of TCONS_00015284-protein >TCONS_00015284-protein ID=TCONS_00015284-protein|Name=TCONS_00015284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MKAFILITLLAAAYSLEVGTQTGTTPPAVPCPDSLCKGKADGNFEYHYYG
RYRANYFLQCSNGLASCQPCFPLSLEFSEPCNQCLYNRKDECVSTQPWEP
ATTFACPDKCPARGPHFSGNIKDDHQPRQYVACFHGQTVGCIACPSGLLF
NEEWNACLYEGKYKTEPESPPKH Run BLAST on NCBI transcript from alignment at sc0000208:259407..260574- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015284 ID=TCONS_00015284|Name=TCONS_00015284|organism=Clytia hemisphaerica|type=transcript|length=1168bp|location=Sequence derived from alignment at sc0000208:259407..260574- (Clytia hemisphaerica)
CTAAATCAAGCTATAGTCCATTAAGTTGGGTGGGTTTGCAGTATAAAAAC
GTGGAGTTTGGCATTTCAAATTCATCTTGCATTCTGAAGACAACAAAATA
ACTTCAAGAAGAAGAAGAAAACAACAAAAATGAAGGCTTTCATTCTCATC
ACCCTCTTGGCTGGTAAGCATTTTATTTTTCCATATCATCTAAACTAAGA
CATAAGGTGGGAAAGTCAAATTTTTAATACGATCTTTGGAAAAATTTTGG
CCATCTACCGGTACATCTAACTTCAATGCTTATTCAGTGCTTTTGTTTAA
AAACTAACAAAATCTGTTCTTTATTTTCTCAGCTGCCTACTCTCTCGAAG
TTGGAACCCAAACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCC
TTGTGCAAAGGAAAAGCTGACGGAAACTTCGAATATCACTACTATGGCCG
ATACAGAGCCAACTACTTCCTCCAATGCTCAAACGGATTAGCTTCATGCC
AACCATGCTTCCCATTGTCTTTGGAATTCAGCGAACCATGTAACCAATGT
TTGTACAACCGAAAAGACGAATGTGTCAGCACACAACCATGGGAACCAGC
AACCACCTTCGCTTGCCCAGACAAATGCCCAGCCCGTGGACCACACTTCA
GTGGAAACATCAAAGACGATCACCAACCACGACAATACGTTGCTTGCTTC
CACGGACAAACTGTCGGATGTATCGCTTGCCCATCAGGACTTTTGTTCAA
CGAGGAATGGAACGCCTGTTTGTACGAAGGAAAATACAAGACTGAACCAG
AATCACCACCAAAACACTAAACGGTGTGTTAATCAAAATCGATTCAAATC
ACAAGAAAGATCTAAATGGCGATCTAAATTCACAATGAACTAAAAATGAA
AACACTTTATTCAGAGCATTTTAAACTCTCAAGTTTTCAAAATTTTACGC
ATCCTTCTCTCGAAGGATTGTTTTTATTCTGTCACATTGTATATTTGAGT
ATTTAAATACAATAAAAACTCTCTCTCTTGAATCAAATGGTCTTCTTAAT
AATATTTTCGTGCTTACCCTTAAAGATATGTACTAGTAGAGACAGGTTTT
TCCTCGAAAGGGGTTACTAGTGTTGGAGAATGTCGGGTATGTGTGAACAT
GAAAGCTTCCGAAAACTT Coding sequence (CDS) from alignment at sc0000208:259407..260574- >TCONS_00015284 ID=TCONS_00015284|Name=TCONS_00015284|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000208:259407..260574- (Clytia hemisphaerica)
CTGCCTACTCTCTCGAAGTTGGAACCCAAACTGGTACCACACCACCAGCT
GTCCCATGCCCAGACTCCTTGTGCAAAGGAAAAGCTGACGGAAACTTCGA
ATATCACTACTATGGCCGATACAGAGCCAACTACTTCCTCCAATGCTCAA
ACGGATTAGCTTCATGCCAACCATGCTTCCCATTGTCTTTGGAATTCAGC
GAACCATGTAACCAATGTTTGTACAACCGAAAAGACGAATGTGTCAGCAC
ACAACCATGGGAACCAGCAACCACCTTCGCTTGCCCAGACAAATGCCCAG
CCCGTGGACCACACTTCAGTGGAAACATCAAAGACGATCACCAACCACGA
CAATACGTTGCTTGCTTCCACGGACAAACTGTCGGATGTATCGCTTGCCC
ATCAGGACTTTTGTTCAACGAGGAATGGAACGCCTGTTTGTACGAAGGAA
AATACAAGACTGAACCAGAATCACCACCAAAACACTAAATGAAGGCTTTC
ATTCTCATCACCCTCTTGGCTGCTGCCTACTCTCTCGAAGTTGGAACCCA
AACTGGTACCACACCACCAGCTGTCCCATGCCCAGACTCCTTGTGCAAAG
GAAAAGCTGACGGAAACTTCGAATATCACTACTATGGCCGATACAGAGCC
AACTACTTCCTCCAATGCTCAAACGGATTAGCTTCATGCCAACCATGCTT
CCCATTGTCTTTGGAATTCAGCGAACCATGTAACCAATGTTTGTACAACC
GAAAAGACGAATGTGTCAGCACACAACCATGGGAACCAGCAACCACCTTC
GCTTGCCCAGACAAATGCCCAGCCCGTGGACCACACTTCAGTGGAAACAT
CAAAGACGATCACCAACCACGACAATACGTTGCTTGCTTCCACGGACAAA
CTGTCGGATGTATCGCTTGCCCATCAGGACTTTTGTTCAACGAGGAATGG
AACGCCTGTTTGTACGAAGGAAAATACAAGACTGAACCAGAATCACCACC
AAAACACTAAATGAAGGCTTTCATTCTCATCACCCTCTTGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015284-exon-sc0000208-1575043694:260412..260574 | TCONS_00015284-exon-sc0000208-1575043694:260412..260574 | Clytia hemisphaerica | exon |
| TCONS_00015284-exon-sc0000208-1575043694:259407..260242 | TCONS_00015284-exon-sc0000208-1575043694:259407..260242 | Clytia hemisphaerica | exon |
| TCONS_00015284-exon-sc0000208-1510915933:260412..260574 | TCONS_00015284-exon-sc0000208-1510915933:260412..260574 | Clytia hemisphaerica | exon |
| TCONS_00015284-exon-sc0000208-1510915933:259407..260242 | TCONS_00015284-exon-sc0000208-1510915933:259407..260242 | Clytia hemisphaerica | exon |
| TCONS_00015284-exon-sc0000208-1491911889:260412..260574 | TCONS_00015284-exon-sc0000208-1491911889:260412..260574 | Clytia hemisphaerica | exon |
| TCONS_00015284-exon-sc0000208-1491911889:259407..260242 | TCONS_00015284-exon-sc0000208-1491911889:259407..260242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000208 | supercontig | sc0000208:259407..260574 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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