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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015247 ID=TCONS_00015247|Name=TCONS_00015247|organism=Clytia hemisphaerica|type=transcript|length=996bp
TATGGCCCTTTGAAGTACTATTAGATTTTGACACCTCTATTATGATTTAT
ATTCGTAGTTGGCAGTGGACGTGTTAATCTGGGTGCATGAGAAAtctatg
tttgattttttataaatctttctaatttcaactgattttactgttttttc
tacaaaaagaatattttgtaaaagtatgttaaattgttattttgaccaaa
atataCATCACAATATTGGCCAATCCGCTTCCCAGCACCATAAACATCAC
CAAAAATGATAGACTCGAAAACCATACCTCAATCATCAATAAATCAAGTC
CAAAGGTCATCAGCGCACCATGAAGAACTTTTCTCGTTTTGAAAGTCGGA
TATTTTCCATTTGGGAAACAACATTTGATCGTTTCATTATTGTCAGGTCG
AAGAAAAATTGCCGAGATTAATGTAATCACAATCGataccaataaagata
tttgatTGTAAAAACCATCATCGTAAAACCGTTGGAAATCTAAAAACCGA
CTCCGAGCAAGTGCAGCCATAATGACGTAAACTGGTCCGCAAATTACACG
TATTTCCCGTAACCATAGTTTCAATGATTCCGGCTTCCGTAAAAATTGAG
TCAGTGCAAAGAATATGGCGGTTGAAGTGTAAACTTCGActtgaaagttt
gtaaatattGCTAAATAGATGAAGACTGTCAAAACAGCAAGCTTTTTCTT
CTCATCAGTGAAATGTTTGTTTCTGAGGAACCATGCAGCCACGCCAGTTA
TACCAATTAGAAACAGTTTAAATGGGTAAGACAAAGCAAAGAAGCTAACG
AAGTATATACCAATTACACAACCCAAGTCCCATATGATAGATGAGAAGTG
TTCTGATAATTTGAagcttttcttataaaagactGTTAACATCCGCCCCA
AGAAACAAGCAATCGTCCATTTTTGGAGGGCGTGATGAGTAGTAACAGAG
CTTAGGGTATCTTCAAGATttgatattaatgacattttctGTAAGT Run BLAST on NCBI protein sequence of TCONS_00015247-protein >TCONS_00015247-protein ID=TCONS_00015247-protein|Name=TCONS_00015247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
LQKMSLISNLEDTLSSVTTHHALQKWTIACFLGRMLTVFYKKSFKLSEHF
SSIIWDLGCVIGIYFVSFFALSYPFKLFLIGITGVAAWFLRNKHFTDEKK
KLAVLTVFIYLAIFTNFQVEVYTSTAIFFALTQFLRKPESLKLWLREIRV
ICGPVYVIMAALARSRFLDFQRFYDDGFYNQISLLVSIVITLISAIFLRP
DNNETIKCCFPNGKYPTFKTRKVLHGALMTFGLDLLMIEVWFSSLSFLVM
FMVLGSGLANIVMYILVKITI Run BLAST on NCBI transcript from alignment at sc0000205:298953..299948 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015247 ID=TCONS_00015247|Name=TCONS_00015247|organism=Clytia hemisphaerica|type=transcript|length=996bp|location=Sequence derived from alignment at sc0000205:298953..299948 (Clytia hemisphaerica)
ACTTACagaaaatgtcattaatatcaaATCTTGAAGATACCCTAAGCTCT
GTTACTACTCATCACGCCCTCCAAAAATGGACGATTGCTTGTTTCTTGGG
GCGGATGTTAACagtcttttataagaaaagctTCAAATTATCAGAACACT
TCTCATCTATCATATGGGACTTGGGTTGTGTAATTGGTATATACTTCGTT
AGCTTCTTTGCTTTGTCTTACCCATTTAAACTGTTTCTAATTGGTATAAC
TGGCGTGGCTGCATGGTTCCTCAGAAACAAACATTTCACTGATGAGAAGA
AAAAGCTTGCTGTTTTGACAGTCTTCATCTATTTAGCaatatttacaaac
tttcaagTCGAAGTTTACACTTCAACCGCCATATTCTTTGCACTGACTCA
ATTTTTACGGAAGCCGGAATCATTGAAACTATGGTTACGGGAAATACGTG
TAATTTGCGGACCAGTTTACGTCATTATGGCTGCACTTGCTCGGAGTCGG
TTTTTAGATTTCCAACGGTTTTACGATGATGGTTTTTACAatcaaatatc
tttattggtatCGATTGTGATTACATTAATCTCGGCAATTTTTCTTCGAC
CTGACAATAATGAAACGATCAAATGTTGTTTCCCAAATGGAAAATATCCG
ACTTTCAAAACGAGAAAAGTTCTTCATGGTGCGCTGATGACCTTTGGACT
TGATTTATTGATGATTGAGGTATGGTTTTCGAGTCTATCATTTTTGGTGA
TGTTTATGGTGCTGGGAAGCGGATTGGCCAATATTGTGATGtatattttg
gtcaaaataacaatttaacatacttttacaaaatattctttttgtagaaa
aaacagtaaaatcagttgaaattagaaagatttataaaaaatcaaacata
gaTTTCTCATGCACCCAGATTAACACGTCCACTGCCAACTACGAATATAA
ATCATAATAGAGGTGTCAAAATCTAATAGTACTTCAAAGGGCCATA Coding sequence (CDS) from alignment at sc0000205:298953..299948 >TCONS_00015247 ID=TCONS_00015247|Name=TCONS_00015247|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000205:298953..299948 (Clytia hemisphaerica)
TTACagaaaatgtcattaatatcaaATCTTGAAGATACCCTAAGCTCTGT
TACTACTCATCACGCCCTCCAAAAATGGACGATTGCTTGTTTCTTGGGGC
GGATGTTAACagtcttttataagaaaagctTCAAATTATCAGAACACTTC
TCATCTATCATATGGGACTTGGGTTGTGTAATTGGTATATACTTCGTTAG
CTTCTTTGCTTTGTCTTACCCATTTAAACTGTTTCTAATTGGTATAACTG
GCGTGGCTGCATGGTTCCTCAGAAACAAACATTTCACTGATGAGAAGAAA
AAGCTTGCTGTTTTGACAGTCTTCATCTATTTAGCaatatttacaaactt
tcaagTCGAAGTTTACACTTCAACCGCCATATTCTTTGCACTGACTCAAT
TTTTACGGAAGCCGGAATCATTGAAACTATGGTTACGGGAAATACGTGTA
ATTTGCGGACCAGTTTACGTCATTATGGCTGCACTTGCTCGGAGTCGGTT
TTTAGATTTCCAACGGTTTTACGATGATGGTTTTTACAatcaaatatctt
tattggtatCGATTGTGATTACATTAATCTCGGCAATTTTTCTTCGACCT
GACAATAATGAAACGATCAAATGTTGTTTCCCAAATGGAAAATATCCGAC
TTTCAAAACGAGAAAAGTTCTTCATGGTGCGCTGATGACCTTTGGACTTG
ATTTATTGATGATTGAGGTATGGTTTTCGAGTCTATCATTTTTGGTGATG
TTTATGGTGCTGGGAAGCGGATTGGCCAATATTGTGATGtatattttggt
caaaataacaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015247-exon-sc0000205-1491911889:298953..299948 | TCONS_00015247-exon-sc0000205-1491911889:298953..299948 | Clytia hemisphaerica | exon |
| TCONS_00015247-exon-sc0000205-1510915933:298953..299948 | TCONS_00015247-exon-sc0000205-1510915933:298953..299948 | Clytia hemisphaerica | exon |
| TCONS_00015247-exon-sc0000205-1575043694:298953..299948 | TCONS_00015247-exon-sc0000205-1575043694:298953..299948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:298953..299948 . |
Blast
The following BLAST results are available for this feature:
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