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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015242 ID=TCONS_00015242|Name=TCONS_00015242|organism=Clytia hemisphaerica|type=transcript|length=2517bp
AGacgaataaaaaaaacatgtcgaattttcaaaacaaattgctGACTTTG
AAACCAGAAATCATCGATCCTGCTAATTGCAATCCTGGCACATCGCTTTA
CCAACAGATCTTGAAAAGCTCACAAGAACGACTGGATCAACAAACCGTTC
AATTTAATCTGGGGAATGGTCACTCTTTCACCGACCCTTTACAAGCTGCA
GACCATTTACTGGTGAGAGAATATGGTGATACATTTTTGTTTGATACCAC
AAAACAACAACCTATCTTCATCCCACCTGTATTTCAATCcgtagaatttg
aaaaatcatctAACGATACAGCTGTCCTTGATTATAACATCAAAGAACAG
ATGCAGAAAACCCTGGCAAATTTGACACGAAATTCACCAACCTATTGGTT
TACTTCTGAATTACAAACATTTCTACACCTTCAAAACACCAGCCATCCTC
GTGAGGATATCATCAGAGAAAATGAGTTCAGGAAATGGGtattaaacatt
aaaattaTGTACCTAACGCTCAATTATTTGAAGATTGACAATCTTCACTA
GCATCTGTAGCAGCTAACACAAGAACTGACGTTCTCCTGCAAGTCTGTAT
CAATAAACTGAATACATTATCGCCAACGTCTTCTCTGGTGACAGAATTTC
AAACTTTATTCTTGAGACTCTCAAGAAAAGGAGGAATGAAAGCCCTTCGA
CGCAGAATTGAAAAACTGATCGAAAATAACTCTCCAATTGATTTCAATCT
GAAATGGTTTTTCGGACTTGATATAGCTGAGTTAGCTGGTGAAGAAGGCG
AACATTGCAGCTTCGATGATTTAGTATCCTTGAAAGATGAAACCTGCCTA
CAAAATGCGATAATCCTTCATTCAGCTACGTTCCTCACCGACATTGCGAG
CAAAGAGCATCAGGAGtttgattttctcattttctttcCTGCACGCAAAC
TACTAATTGGTATCGAATCAAAAAGGCAACTGACAGACACTGCTTTTACA
CAGTTGAACACTTACTATAGACTTTTTGAAGAAGGGCTAAGTGATCAGCT
TGGTCCTGGCTGGACCTTCTTTCCGGTCATCAGTGTTCAGAAAGACctag
taaaatttcaaaaccatCATTATATACACAGTGACACCGATATAAACATC
TGGTTATCAAGCATCCTGAAGAAATATCCAGTTCTCAGTGAAGCAGACAC
CACTTTATCGTTGGAGAATCTCAAAAAGGTCGTTCGAATCGTTGTTTTTA
CCATCCACCTGTCGAAAAAGAACCTCAAAACGCCTATCATTGTATCAAAT
TGGGTCGATTATATCACCGAAGCCATCAAAACTGTCTcgaatagcaacaa
tattttattttactcTGCTCGACAGCTTCCAGTGTTGACCAGCAATGATC
CTGCGTACAAGAAAGTAGTAATTCATGGTGGATTTGGTGTTGGTAAGACG
TTCTTGCTCCAGGAAAAAGCTATTATGCTTAACGAATTACCGGATTTCAA
AGGTCGTGTAATGTTTCTATCTTTAGCAAGCATAGATGCTCCTAAATCTT
TGCTTTACCATAAATTACGACACGATTTTGACCAGTGTGGAATCAAATTG
AGAAAGTTCTGTCCACTAAATATTGACTTAATGGTGAAGGAGATTCAAAA
TGATGATATAAAAGCCTTGTTGATTGATGAGTGCGATGTACTTCGGCTAC
AGGAGGACAGTTTGATCGATATACTTTTAAAACTCGTCGAGGTTATCTGG
GTTGCACCAAATGCCAAAAGTCAATACGCAGGTCGAGATAATTTCCTTCG
TGATGATTTCCTCTTCCTGAATTTGTCACAAAATTTACGAAATAGCAGAG
CAACTGCTCAGATGGCGAAGAAACATGCGGAGAAAAGTAATTATCTTTAC
AAGGAAGGTGTGAAGATGCCACCTGCCAACTTTCCTTCTGGCTGTCCACC
AACGTTTGTCCATACATTTAAGGAGGCGGTACAGTTGGCAAGGAATCAAT
CAAATCATGGTATTCTATgcattcttgaaatttttgataacttaaagAAC
TTTGATATTAAAGAACTCAAAACGTTTACCGATTTTTTAGATCAGATGCA
AGAAGAATGGAAAATTTATGATATGAAACCATGGATAGAACAAAGCGAtt
ttaatgaatgtgaaaacCCATACAAGTACCTATGCGATGGAAAATTTCTG
TTCGCTTCCAACCGATCGGTGATAGGATTTGAGTGGCCTACAGTAATCTC
GTTTGCAAGCCgatatttttcatataattttgtAGAAGAACATGAATGTA
ATTATTTCCTAAGATGTACGACGAACCTAATCTTGGTGAACTTTCCTTAG
ATGTACGACGAACCTAATCGTGGTGAACTGAGTAGACTGAACCCTACGTA
GTACAGAGCACGAATCTGTTAGTGGATGCCGGCAGCCTATTTATTCTact
taaataatatttttacgTATTTAATTTTAAGATGAAGTTTTTTTGATAtt
caaataaatgaaaaaag Run BLAST on NCBI protein sequence of TCONS_00015242-protein >TCONS_00015242-protein ID=TCONS_00015242-protein|Name=TCONS_00015242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MKALRRRIEKLIENNSPIDFNLKWFFGLDIAELAGEEGEHCSFDDLVSLK
DETCLQNAIILHSATFLTDIASKEHQEFDFLIFFPARKLLIGIESKRQLT
DTAFTQLNTYYRLFEEGLSDQLGPGWTFFPVISVQKDLVKFQNHHYIHSD
TDINIWLSSILKKYPVLSEADTTLSLENLKKVVRIVVFTIHLSKKNLKTP
IIVSNWVDYITEAIKTVSNSNNILFYSARQLPVLTSNDPAYKKVVIHGGF
GVGKTFLLQEKAIMLNELPDFKGRVMFLSLASIDAPKSLLYHKLRHDFDQ
CGIKLRKFCPLNIDLMVKEIQNDDIKALLIDECDVLRLQEDSLIDILLKL
VEVIWVAPNAKSQYAGRDNFLRDDFLFLNLSQNLRNSRATAQMAKKHAEK
SNYLYKEGVKMPPANFPSGCPPTFVHTFKEAVQLARNQSNHGILCILEIF
DNLKNFDIKELKTFTDFLDQMQEEWKIYDMKPWIEQSDFNECENPYKYLC
DGKFLFASNRSVIGFEWPTVISFASRYFSYNFVEEHECNYFLRCTTNLIL
VNFP Run BLAST on NCBI transcript from alignment at sc0000205:189554..192070 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015242 ID=TCONS_00015242|Name=TCONS_00015242|organism=Clytia hemisphaerica|type=transcript|length=2517bp|location=Sequence derived from alignment at sc0000205:189554..192070 (Clytia hemisphaerica)
cttttttcatttatttgaaTATCAAAAAAACTTCATCTTAAAATTAAATA
cgtaaaaatattatttaagtAGAATAAATAGGCTGCCGGCATCCACTAAC
AGATTCGTGCTCTGTACTACGTAGGGTTCAGTCTACTCAGTTCACCACGA
TTAGGTTCGTCGTACATCTAAGGAAAGTTCACCAAGATTAGGTTCGTCGT
ACATCTTAGGAAATAATTACATTCATGTTCTTCTacaaaattatatgaaa
aatatcGGCTTGCAAACGAGATTACTGTAGGCCACTCAAATCCTATCACC
GATCGGTTGGAAGCGAACAGAAATTTTCCATCGCATAGGTACTTGTATGG
gttttcacattcattaaaaTCGCTTTGTTCTATCCATGGTTTCATATCAT
AAATTTTCCATTCTTCTTGCATCTGATCTAAAAAATCGGTAAACGTTTTG
AGTTCTTTAATATCAAAGTTctttaagttatcaaaaatttcaagaatgcA
TAGAATACCATGATTTGATTGATTCCTTGCCAACTGTACCGCCTCCTTAA
ATGTATGGACAAACGTTGGTGGACAGCCAGAAGGAAAGTTGGCAGGTGGC
ATCTTCACACCTTCCTTGTAAAGATAATTACTTTTCTCCGCATGTTTCTT
CGCCATCTGAGCAGTTGCTCTGCTATTTCGTAAATTTTGTGACAAATTCA
GGAAGAGGAAATCATCACGAAGGAAATTATCTCGACCTGCGTATTGACTT
TTGGCATTTGGTGCAACCCAGATAACCTCGACGAGTTTTAAAAGTATATC
GATCAAACTGTCCTCCTGTAGCCGAAGTACATCGCACTCATCAATCAACA
AGGCTTTTATATCATCATTTTGAATCTCCTTCACCATTAAGTCAATATTT
AGTGGACAGAACTTTCTCAATTTGATTCCACACTGGTCAAAATCGTGTCG
TAATTTATGGTAAAGCAAAGATTTAGGAGCATCTATGCTTGCTAAAGATA
GAAACATTACACGACCTTTGAAATCCGGTAATTCGTTAAGCATAATAGCT
TTTTCCTGGAGCAAGAACGTCTTACCAACACCAAATCCACCATGAATTAC
TACTTTCTTGTACGCAGGATCATTGCTGGTCAACACTGGAAGCTGTCGAG
CAgagtaaaataaaatattgttgctattcgAGACAGTTTTGATGGCTTCG
GTGATATAATCGACCCAATTTGATACAATGATAGGCGTTTTGAGGTTCTT
TTTCGACAGGTGGATGGTAAAAACAACGATTCGAACGACCTTTTTGAGAT
TCTCCAACGATAAAGTGGTGTCTGCTTCACTGAGAACTGGATATTTCTTC
AGGATGCTTGATAACCAGATGTTTATATCGGTGTCACTGTGTATATAATG
atggttttgaaattttactagGTCTTTCTGAACACTGATGACCGGAAAGA
AGGTCCAGCCAGGACCAAGCTGATCACTTAGCCCTTCTTCAAAAAGTCTA
TAGTAAGTGTTCAACTGTGTAAAAGCAGTGTCTGTCAGTTGCCTTTTTGA
TTCGATACCAATTAGTAGTTTGCGTGCAGgaaagaaaatgagaaaatcaa
aCTCCTGATGCTCTTTGCTCGCAATGTCGGTGAGGAACGTAGCTGAATGA
AGGATTATCGCATTTTGTAGGCAGGTTTCATCTTTCAAGGATACTAAATC
ATCGAAGCTGCAATGTTCGCCTTCTTCACCAGCTAACTCAGCTATATCAA
GTCCGAAAAACCATTTCAGATTGAAATCAATTGGAGAGTTATTTTCGATC
AGTTTTTCAATTCTGCGTCGAAGGGCTTTCATTCCTCCTTTTCTTGAGAG
TCTCAAGAATAAAGTTTGAAATTCTGTCACCAGAGAAGACGTTGGCGATA
ATGTATTCAGTTTATTGATACAGACTTGCAGGAGAACGTCAGTTCTTGTG
TTAGCTGCTACAGATGCTAGTGAAGATTGTCAATCTTCAAATAATTGAGC
GTTAGGTACAtaattttaatgtttaataCCCATTTCCTGAACTCATTTTC
TCTGATGATATCCTCACGAGGATGGCTGGTGTTTTGAAGGTGTAGAAATG
TTTGTAATTCAGAAGTAAACCAATAGGTTGGTGAATTTCGTGTCAAATTT
GCCAGGGTTTTCTGCATCTGTTCTTTGATGTTATAATCAAGGACAGCTGT
ATCGTTagatgatttttcaaattctacgGATTGAAATACAGGTGGGATGA
AGATAGGTTGTTGTTTTGTGGTATCAAACAAAAATGTATCACCATATTCT
CTCACCAGTAAATGGTCTGCAGCTTGTAAAGGGTCGGTGAAAGAGTGACC
ATTCCCCAGATTAAATTGAACGGTTTGTTGATCCAGTCGTTCTTGTGAGC
TTTTCAAGATCTGTTGGTAAAGCGATGTGCCAGGATTGCAATTAGCAGGA
TCGATGATTTCTGGTTTCAAAGTCagcaatttgttttgaaaattcgacat
gttttttttattcgtCT Coding sequence (CDS) from alignment at sc0000205:189554..192070 >TCONS_00015242 ID=TCONS_00015242|Name=TCONS_00015242|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0000205:189554..192070 (Clytia hemisphaerica)
CTAAGGAAAGTTCACCAAGATTAGGTTCGTCGTACATCTTAGGAAATAAT
TACATTCATGTTCTTCTacaaaattatatgaaaaatatcGGCTTGCAAAC
GAGATTACTGTAGGCCACTCAAATCCTATCACCGATCGGTTGGAAGCGAA
CAGAAATTTTCCATCGCATAGGTACTTGTATGGgttttcacattcattaa
aaTCGCTTTGTTCTATCCATGGTTTCATATCATAAATTTTCCATTCTTCT
TGCATCTGATCTAAAAAATCGGTAAACGTTTTGAGTTCTTTAATATCAAA
GTTctttaagttatcaaaaatttcaagaatgcATAGAATACCATGATTTG
ATTGATTCCTTGCCAACTGTACCGCCTCCTTAAATGTATGGACAAACGTT
GGTGGACAGCCAGAAGGAAAGTTGGCAGGTGGCATCTTCACACCTTCCTT
GTAAAGATAATTACTTTTCTCCGCATGTTTCTTCGCCATCTGAGCAGTTG
CTCTGCTATTTCGTAAATTTTGTGACAAATTCAGGAAGAGGAAATCATCA
CGAAGGAAATTATCTCGACCTGCGTATTGACTTTTGGCATTTGGTGCAAC
CCAGATAACCTCGACGAGTTTTAAAAGTATATCGATCAAACTGTCCTCCT
GTAGCCGAAGTACATCGCACTCATCAATCAACAAGGCTTTTATATCATCA
TTTTGAATCTCCTTCACCATTAAGTCAATATTTAGTGGACAGAACTTTCT
CAATTTGATTCCACACTGGTCAAAATCGTGTCGTAATTTATGGTAAAGCA
AAGATTTAGGAGCATCTATGCTTGCTAAAGATAGAAACATTACACGACCT
TTGAAATCCGGTAATTCGTTAAGCATAATAGCTTTTTCCTGGAGCAAGAA
CGTCTTACCAACACCAAATCCACCATGAATTACTACTTTCTTGTACGCAG
GATCATTGCTGGTCAACACTGGAAGCTGTCGAGCAgagtaaaataaaata
ttgttgctattcgAGACAGTTTTGATGGCTTCGGTGATATAATCGACCCA
ATTTGATACAATGATAGGCGTTTTGAGGTTCTTTTTCGACAGGTGGATGG
TAAAAACAACGATTCGAACGACCTTTTTGAGATTCTCCAACGATAAAGTG
GTGTCTGCTTCACTGAGAACTGGATATTTCTTCAGGATGCTTGATAACCA
GATGTTTATATCGGTGTCACTGTGTATATAATGatggttttgaaatttta
ctagGTCTTTCTGAACACTGATGACCGGAAAGAAGGTCCAGCCAGGACCA
AGCTGATCACTTAGCCCTTCTTCAAAAAGTCTATAGTAAGTGTTCAACTG
TGTAAAAGCAGTGTCTGTCAGTTGCCTTTTTGATTCGATACCAATTAGTA
GTTTGCGTGCAGgaaagaaaatgagaaaatcaaaCTCCTGATGCTCTTTG
CTCGCAATGTCGGTGAGGAACGTAGCTGAATGAAGGATTATCGCATTTTG
TAGGCAGGTTTCATCTTTCAAGGATACTAAATCATCGAAGCTGCAATGTT
CGCCTTCTTCACCAGCTAACTCAGCTATATCAAGTCCGAAAAACCATTTC
AGATTGAAATCAATTGGAGAGTTATTTTCGATCAGTTTTTCAATTCTGCG
TCGAAGGGCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015242-exon-sc0000205-1491911889:189554..192070 | TCONS_00015242-exon-sc0000205-1491911889:189554..192070 | Clytia hemisphaerica | exon |
| TCONS_00015242-exon-sc0000205-1510915933:189554..192070 | TCONS_00015242-exon-sc0000205-1510915933:189554..192070 | Clytia hemisphaerica | exon |
| TCONS_00015242-exon-sc0000205-1575043694:189554..192070 | TCONS_00015242-exon-sc0000205-1575043694:189554..192070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:189554..192070 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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