TCONS_00015238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015238
Unique NameTCONS_00015238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015238 ID=TCONS_00015238|Name=TCONS_00015238|organism=Clytia hemisphaerica|type=transcript|length=725bp
NNTTGGGATGTTGGTGGATCACTCGGTTGGGATGTTGGTGGATCACTCGG
TTGGGATGTTGGTTCAAACGTGTTGCTGTACAATGGACAAGCCGAATACT
AATACGCAACGGTGCTCGGTTTTGAGGTACGTCGTAATGAGTACGCCCAG
AACCAGACTGGCTTGGTATGTAGTGATTAAGTTGTGCTATTGCAGAGGAC
ACTAATTGAACATTACTTATTTTGGGATGTTGGAAATATTGAAGTGACTA
GTTGATTTGTCACTAGTAACGTGGTTTTTAATTTGGTAAAACGTTACTCA
GACATTTTGGGATGTTGGAAATATTGAAGTGACTAGTTTAACTGTCACTA
GTAACGTGGTTTTTAATTTGGTAAAACGTTACTCAGACATTTTGGGATGT
TGGAAATATTGAAGTGACTAGTTTAACTGTCACTAGTAACGTGGTTTTTA
ATTTGGTAAAACGTTACTCAGACATTTTGGGATGTTGGAAATATTGAAGT
GACCAGTTGAGTTGTCACTAGTAACGTGGTATAATACGTAACAAACATTG
ATCTTGGTTGAAAATTAAGTAGTCAAGACTATTTATGAACTGATGAATAT
TGATTATGTTATTGCTCACTACAAATGATTGGTTGCATTGAAAATCAAAT
AGTTTTGTCATTGGGACATGACTTTCAAAGTGGGGGTGAATGTGGGAATC
ACTAAATCGATAGCTTTATTTTTNN
Run BLAST on NCBI

transcript from alignment at sc0000205:63429..64153

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015238 ID=TCONS_00015238|Name=TCONS_00015238|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0000205:63429..64153 (Clytia hemisphaerica)
NNAAAAATAAAGCTATCGATTTAGTGATTCCCACATTCACCCCCACTTTG
AAAGTCATGTCCCAATGACAAAACTATTTGATTTTCAATGCAACCAATCA
TTTGTAGTGAGCAATAACATAATCAATATTCATCAGTTCATAAATAGTCT
TGACTACTTAATTTTCAACCAAGATCAATGTTTGTTACGTATTATACCAC
GTTACTAGTGACAACTCAACTGGTCACTTCAATATTTCCAACATCCCAAA
ATGTCTGAGTAACGTTTTACCAAATTAAAAACCACGTTACTAGTGACAGT
TAAACTAGTCACTTCAATATTTCCAACATCCCAAAATGTCTGAGTAACGT
TTTACCAAATTAAAAACCACGTTACTAGTGACAGTTAAACTAGTCACTTC
AATATTTCCAACATCCCAAAATGTCTGAGTAACGTTTTACCAAATTAAAA
ACCACGTTACTAGTGACAAATCAACTAGTCACTTCAATATTTCCAACATC
CCAAAATAAGTAATGTTCAATTAGTGTCCTCTGCAATAGCACAACTTAAT
CACTACATACCAAGCCAGTCTGGTTCTGGGCGTACTCATTACGACGTACC
TCAAAACCGAGCACCGTTGCGTATTAGTATTCGGCTTGTCCATTGTACAG
CAACACGTTTGAACCAACATCCCAACCGAGTGATCCACCAACATCCCAAC
CGAGTGATCCACCAACATCCCAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008519XLOC_008519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015238-exon-sc0000205-1491911889:63429..64153TCONS_00015238-exon-sc0000205-1491911889:63429..64153Clytia hemisphaericaexon
TCONS_00015238-exon-sc0000205-1510915933:63429..64153TCONS_00015238-exon-sc0000205-1510915933:63429..64153Clytia hemisphaericaexon
TCONS_00015238-exon-sc0000205-1575043694:63429..64153TCONS_00015238-exon-sc0000205-1575043694:63429..64153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:63429..64153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7471	12.0402	5.43187	3.87772	53.7548	36.4034	49.7639	54.9086	29.0725	21.6776	38.966	40.3751	18.4183	21.3471	18.4014	14.8973	21.7887	23.9355	19.2809	14.8623	41.2956	45.592	26.5701	27.1671	33.7558	47.32	24.2796	20.2473	26.9587	26.6956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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