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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015226 ID=TCONS_00015226|Name=TCONS_00015226|organism=Clytia hemisphaerica|type=transcript|length=1884bp
ATCATCACCTAGCAGTCCAAAGAGAAGGAATTTTTCATTATACAAAAATT
ACAACAAATATGTCGCCAAGAGACAGTGATAATGAATCAGTCGAAGAAAT
GTTTTCAtacaatgatgatgatgaggatCTCGAATATGATGAAGGAGACA
TGGAGAATGCAATTATTTTGGATGAAAATGATGCACCAGAACTGCATGAT
GCGATGGATGATCTAGATGTGGAAGAAGATCCTGAAAATGctgaagaaat
tgaaaatggtTTCATTCCCGAtgattcaaaaatgatttttcaaaaacatg
acGGCTCTATATTTTGTATAGCTGTTTCCCCGCAAAACAATGATTTGATG
GTTTCAGGTGGCGAGGATGATAAAGGAGTTCTACTTAAGATGAGTACTGA
TGAGGAATTATTTGAGCTAAAGAATCATAAGGATTCAGTTGTATGTTGTG
GATTCAACTCAGATGGAAAGTATGTCATGACTGCTGATATGAGTGGTACT
ATAATTGTTCGAAACGTAGAAGATGGAAAAATGGTTTGGGATTTTGATTG
TGGTGATTTGGAATGGTGTAAATGGCATTCGAAAGCAAATGTGATTTTTG
GCGGTACAGCTGATGGAGATATTTACATGTGGAAGATACCGAGTGGTGAT
TGCAAGATATTCCAAACTCACGGTAGTAAATCTACTTGTAGCATTCTTTC
TGCAAGTGGCAAAGAACTGTTTGCTGGTTATGAGGATGGAAGTGTAAAAA
TGTGGGATTTGAAAGCTGGTACAGCCGTTTTTCAAGATGGGGGAGATCAA
GAGGATCCGGTGATTTGTGTCACAGGACAGTCAAACGGTAAAGTTTTTGC
TTGTGGTACAAACTCTGGTCTTATAAGATTATATAATGAAACAGGCAAAT
CATTAACCATTTTAAATGATATTTCCAACAGTAACGAAGACGAAGAAAAA
TCTATTGAAGGGCTTGTTTTCCAAGATGAACATTATTTAGCTTCATGTTC
TTTGAATGGAAAAGTATGCATCTGGGATACACAAACGCAGCGTATCCGTC
ACGAGTTTAAACACACTTCAGGTGTGTCTCATATAGTATGGTTGAATAAG
TCTAATAATATTTTAGCAGTTGGTCTGGatggtgttttaaaattatggaG
TTTGAGTTCTGGTTCTATTGAGAAAGAACTTCAAGGACACCGTGGTCATG
TTTTGGATGTACAAGTTTTTGACAATGAAAAATTTGTATTGACCGCAGGT
GACGATGAAACCTGTCGTGTTTTTGAATTATAGCAATTATTTCTATAgaa
tgatgaaattttgtgatgaattTTTAAAAGAGACTTATTTTATAACAATC
CCCATTTGTCACAAGTGGACAAAAACATTGCTTTACAAAGTGTGTGAAAT
TTGAGTGAAAtttagatttaattttatgtCCAGGGATCATCAAAACATGT
TTAAGCCTTTCAGTCCTTTAGCCATTTTGGCGGTACCCTGGGGAATTCAC
CTTTGAAGGCAAAGAACTCCAGAACGATGAAGTTTATAGAGCTCTCACAG
TAACTACCGTTCAAAAAAGCATGAAGTTCTGTTAAAAATGGGCTGGTTTG
AACAGGTTCATCTCTTTTGAATAAAGTGAAAAGATCAGGCACTAAAGGAT
TTCACTGGTTATACCCATTttgtcatttaaaaatattgatcatatACCTT
TATTTAGAATACTTTATTTTACCTCGctattttactttttgaagtAAATA
TTTAGATGAATATACTTCAAGGAATTTACAGTATTACgatgaaaattttt
ctattgaTCAAAATATCTCTAACTAGCCTGCATCCTTAAAGTAAAAGCAA
ATTAATAATTTATTGCTTTTTATCTTttgtaaag Run BLAST on NCBI transcript from alignment at sc0000205:208675..212512- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015226 ID=TCONS_00015226|Name=TCONS_00015226|organism=Clytia hemisphaerica|type=transcript|length=3838bp|location=Sequence derived from alignment at sc0000205:208675..212512- (Clytia hemisphaerica)
ATCATCACCTAGCAGTCCAAAGAGGTTGGTACTACTTTGAATTCTGCTCT
TGTTGAAAAAATTGCCTAATTATATACAAATGAAAAATTCATAAAAGTGC
TATACAAAGGAGTTGATAAAAAAACGTAAATGCTAATAAAATTATTCTTT
AGGGTATATATTCAAGTACTATTTCTGGAAAGTTGTAATTGTTTAGTTTC
CAGTTGATTGTTAAGTGACTGTTTCATGGTAGCTATAAATAAAGCTTCTA
GAAACTTCTTTTCCTTATCAAATACGGTATCTTTTAAGATACATCTCCAA
TTAAATTGTTTGGTTGGGTTTTCTTTTAAACACTTAGCGAGTTATGATTA
ACGTTTTCCTGTTCAGCCCATCTAGTTTCAATATTTCGTTCTGTTTCACA
GACATAATTTTCACCACACAGCATACTCCTTTGTAAATTTGACATGCCAT
GTCTGGCTTCTTATCCTTCAAAAAAATTATTTTTTGACTTTCTTTGTTTT
CCAAATACTGAAACTTGATAACAATCGTTGGTGAGTTAGTTGAATCTTCA
AGGGAACTTTTTTTANTGAAACTTGATAACAATCGTTGGTGAGTTAGTTG
AATCTTCAAAGGAACTTTTTTTAGGTTAAGTTTTTTAATGTATTTTCGTG
TTTTAACAAAACGGATTGAAATTTTGACAGTTTATTTTTGTTTGGTATCC
AGTGTCATTTTAAAATAAACTAATAAGCATATGCTATTTCTTCTAGAAGG
AATTTTTCATTATACAAAAATTACAACAAATATGTCGCCAAGAGACAGTG
ATAATGAATCAGTCGAAGAAATGTTTTCATACAATGATGATGATGAGGAT
CTCGAATATGATGAAGGAGACATGGAGAATGCAATTATTTTGGATGAAAA
TGATGCACCAGGTAAATAATGAATGCTTCTTTTAATAAAGAGACGTTTGC
AAGCAGATGGTTTAGACAGCCAATCATGGCTCCCCCCACTTATTTAGGGG
GGTGTAAATCTAAAATCGGCCTAAAAGTGGGTGGGAGCTGTCTCATTTTT
TAAACTCAGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTAAATTTGTTGGGGGGATTTAG
AACCCCATTCGGAGCCATGCCAATTTTCTGCCCTACCTATTCAAATTGTT
AGGAGTGGGTAAAAAGCTGGCAGTTTTCAAATCTTTGCTTGGAAAAGATT
GAAAGAAGATTTTGCATTGACGTCAAAAGAGGGCAATGCGTTGACTTTAG
ACAGCCAATCTTCTGCCCAATTTAATTCATAATTAGATTAGGCATGGCGG
AAAGTGGGCCATCTAAACTAGAGCTTTAGTTTAACTTTTATATATGATTG
ACCCTAATGTCAATGTCAGGTCTGGTCAAGTTCATTATTTATTGAATTTT
TCTCAGATTTGGGTGGATCCATCATTCGTTCTGTAGAATTTAGTACCTTA
AGTGGATTAATTTTTGTGAGGGTTATAAATTTGGAAATGTTGCCAAATAG
GAAAATGAAAGAATTTAGGACTGAATTGACTTGACTTCCTCGAAAATTAT
ATTAATTTTGAAAAAAATTGTTTTGCCAAAATATCTGCTCGTGAAAATAT
ATTCAATTAAGATAGAGTTAAAATAATGAAAGCTAATGCGATAAGGTCTT
TATGTTGTTGATAAATTAGGTTAAACAAGGGTGTTATTGTTATCCTTGCT
ATAACTCATTTAACATTTATATGACCTGGTTGTTTTTGTGTAGAACTGCA
TGATGCGATGGATGATCTAGATGTGGAAGAAGATCCTGAAAATGCTGAAG
AAATTGAAAATGGTTTCATTCCCGATGATTCAAAAATGATTTTTCAAAAA
CATGACGGCTCTATATTTTGTATAGCTGTTTCCCCGCAAAACAATGATTT
GATGGTTTCAGGTGGCGAGGATGATAAAGGAGTTCTACTTAAGATGAGTA
CTGATGAGGAATTATTTGAGCTAAAGAATCATAAGGATTCAGTTGTATGT
TGTGGATTCAACTCAGATGGAAAGTATGTCATGACTGCTGATATGAGTGG
TACTATAATTGTTCGAAACGTAGAAGATGGAAAAATGGTTTGGGATTTTG
ATTGTGGTGATTTGGAATGGTGTAAATGGCATTCGAAAGCAAATGTGATT
TTTGGCGGTACAGCTGATGGAGATATTTACATGTGGAAGATACCGAGTGG
TGATTGCAAGATATTCCAAACTCACGGTAGTAAATCTACTTGTAGCATTC
TTTCTGCAAGTGGCAAAGAACTGTTTGCTGGTTATGAGGATGGAAGTGTA
AAAATGTGGGATTTGAAAGCTGGTACAGCCGTTTTTCAAGATGGGGGAGA
TCAAGAGGATCCGGTGATTTGTGTCACAGGACAGTCAAACGGTAAAGTTT
TTGCTTGTGGTACAAACTCTGGTCTTATAAGATTATATAATGAAACAGGC
AAATCATTAACCATTTTAAATGATATTTCCAACAGTAACGAAGACGAAGA
AAAATCTATTGAAGGGCTTGTTTTCCAAGATGAACATTATTTAGCTTCAT
GTTCTTTGAATGGAAAAGTATGCATCTGGGATACACAAACGCAGCGTATC
CGTCACGAGTTTAAACACACTTCAGGTGTGTCTCATATAGTATGGTTGAA
TAAGTCTAATAATATTTTAGCAGTTGGTCTGGATGGTGTTTTAAAATTAT
GGAGTTTGAGTTCTGGTTCTATTGAGAAAGAACTTCAAGGACACCGTGGT
CATGTTTTGGATGTACAAGTTTTTGACAATGAAAAATTTGTATTGACCGC
AGGTGACGATGAAACCTGTCGTGTTTTTGAATTATAGCAATTATTTCTAT
AGAATGATGAAATTTTGTGATGAATTTTTAAAAGAGACTTATTTTATAAC
AATCCCCATTTGTCACAAGTGGACAAAAACATTGCTTTACAAAGTGTGTG
AAATTTGAGTGAAATTTAGATTTAATTTTATGTCCAGGGATCATCAAAAC
ATGTTTAAGCCTTTCAGTCCTTTAGCCATTTTGGCGGTACCCTGGGGAAT
TCACCTTTGAAGGCAAAGAACTCCAGAACGATGAAGTTTATAGAGCTCTC
ACAGTAACTACCGTTCAAAAAAGCATGAAGTTCTGTTAAAAATGGGCTGG
TTTGAACAGGTTCATCTCTTTTGAATAAAGTGAAAAGATCAGGCACTAAA
GGATTTCACTGGTTATACCCATTTTGTCATTTAAAAATATTGATCATATA
CCTTTATTTAGAATACTTTATTTTACCTCGCTATTTTACTTTTTGAAGTA
AATATTTAGATGAATATACTTCAAGGAATTTACAGTATTACGATGAAAAT
TTTTCTATTGATCAAAATATCTCTAACTAGCCTGCATCCTTAAAGTAAAA
GCAAATTAATAATTTATTGCTTTTTATCTTTTGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015226-exon-sc0000205-1575043694:212489..212512 | TCONS_00015226-exon-sc0000205-1575043694:212489..212512 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1575043694:211602..211766 | TCONS_00015226-exon-sc0000205-1575043694:211602..211766 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1575043694:208675..210369 | TCONS_00015226-exon-sc0000205-1575043694:208675..210369 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1510915933:212489..212512 | TCONS_00015226-exon-sc0000205-1510915933:212489..212512 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1510915933:211602..211766 | TCONS_00015226-exon-sc0000205-1510915933:211602..211766 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1510915933:208675..210369 | TCONS_00015226-exon-sc0000205-1510915933:208675..210369 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1491911889:212489..212512 | TCONS_00015226-exon-sc0000205-1491911889:212489..212512 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1491911889:211602..211766 | TCONS_00015226-exon-sc0000205-1491911889:211602..211766 | Clytia hemisphaerica | exon |
| TCONS_00015226-exon-sc0000205-1491911889:208675..210369 | TCONS_00015226-exon-sc0000205-1491911889:208675..210369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:208675..212512 - |
Blast
BLAST of TCONS_00015226 vs. Swiss-Prot (Human)
Match: AAMP (Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 3.302e-75 Identity = 123/348 (35.34%), Postives = 191/348 (54.89%), Query Frame = 3
Query: 267 PDDSKMIFQKHDGSIFCIAVSPQNNDLMVSGGEDDKGVLLKMSTDEELFELKNHKDSVVCCGFNSDGKYVMTADMSGTIIVRNVEDGKMVWDFDCGDLEWCKWHSKANVIFGGTADGDIYMWKIPSGDCKIFQTHGSKSTCSILSASGKELFAGYEDGSVKMWDLKAGTAVFQDGGDQ--EDPVICVTGQSNGKVFACGTNSGLIRLYNE-TGKSLTILNDISNSNEDEEKSIEGLVFQDEHYLASCS---------LNGKVCIWDTQTQRIRHEFKHTSGVSHIVWLNKSNNILAVGLDGVLKLWSLSSGSIEKELQGHRGHVLDVQVFDNEKFVLTAGDDETCRVF 1274
PDDS++ F H S+FC+++ P+ N L V+GGEDDK + ++S E LFE HKDSV C GF+ D V T DMSG + V V+ + VW F+ GDLEW +WH +A V+ GTADG+ +MWK+P+GDCK FQ +TC + GK GYEDG++++WDLK G+ + G + + P+ CV +G + G+ +L + TGK + + + +++ E L CS L+G + I+D TQ +RH+ +H SG+ ++W + + LDG+++LW +G + + +GH +LD + + V+T D +VF
Sbjct: 80 PDDSEVTFALHSASVFCVSLDPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVDTKEEVWSFEAGDLEWMEWHPRAPVLLAGTADGNTWMWKVPNGDCKTFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVLKGTEGHQGPLTCVAANQDGSLILTGSVDCQAKLVSATTGKVVGVFRPETVASQPSLGEGEESESNSVESLGFCSVMPLAAVGYLDGTLAIYDLATQTLRHQCQHQSGIVQLLWEAGTAVVYTCSLDGIVRLWDARTGRLLTDYRGHTAEILDFALSKDASLVVTTSGDHKAKVF 427
The following BLAST results are available for this feature:
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