TCONS_00015212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015212
Unique NameTCONS_00015212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015212 ID=TCONS_00015212|Name=TCONS_00015212|organism=Clytia hemisphaerica|type=transcript|length=2388bp
CAAAATGTTGCAGATGGTGCTACAAGGTTGTATTGGTACTACTGTTAATC
AGGGACCATTCGAGATTGCTAACGTTTTCCTGTCAGACTTCGAAAAAGAT
CGAAATGGCGTCTCCAACATTACTCGCCATCATCACAAATTGAGGTTGTG
CTTCAAAGAGTTCGTCAAAAGGTGTAGCGACGCTCTTTCTCTCAACAAAT
CTCTCATCTCACAAGATCAACGAGCCTACCAAAAAGAGTTGGAAAGAAAC
TACCACACTTTCGTGGAAAAGTTGGAACCACTTCTCAAAAGCAAGTTTGG
TCAACTCCGAGGCTCTCTTAGAAGGGAAGGCAGCTCACAAATAAAAGCGC
GTCCAGTTTCACTCAATGTTGACCCTCATTCAAGTAACATATGAGAATGG
CAAAAGAAGACTTTAGTATTAGACTTTATCACGGCCAACTTTCTCGAACG
TACAAGCCCATTGGTAACAATAAATGAGCGGTGAACTAACAGAATACCGC
TATCAAACATGACGCCTGTATGAAAATATTCTCTGACTGATGGATTGTCT
CAtggtacacccctgtctcacagccccggtgaaacctTTTCCCACAAGTG
GGTAGAAATTTCTATCCAAATcttaatggggatagaaattttattcttcc
cagctcaaaaaatccagtggggtggaatgctttttttttttcactgggAA
TAaagttttgaccaaatttttaaTTAGGGCGGGGGTTCCACCGGTGTGGC
ACACGGGGTATCAATTGATTGAGCGTCAAATAATTGGAAATGAATGCAGA
ACGCTTTTACTAAAGCTTAACTTACTCAAACATTGAATAAAGTTTCACTA
TGTCTACCTGATGATAGTGCGTGGATTTCAAACCTCACCTGTACATAATA
TTGTTTCcctttttcattaaattttactCGCACCCTTTGCTCCCGATATG
CGGTCTGGGTGAGGAGCTAAACATTGACTTCCAAACCCGAatggctagac
tcgagactcctgaatgggaaatgaagccacttatttcccgtccagaacgc
ccgcgcttggtttttacacaaacgccagattgaaactaaaatctatcgct
agatttaaaaaaaaagcagTCCTCAAAatcaaaggaaccgctagatataa
tccgtcgtcgtgattacggcgcgttctggatgggaaataagtggtttcaa
ttttcttgcctgagaaaggttaaagattctactctagcccttcaggcttt
aaactcaatggaacTAACTCGTGAAGAAACAAATTTGTACCCAGTCCCCT
TACAACGAGTTTAAGTTTGATTGTTAATTTCCgtttacctttttttaatt
gttaatttagatgatttatttttttccatttttcaatttgataatttttt
atttcctaAGTCACCCTTCCAGAAAGCATTCACAAAGTTTACGAAAATTG
TATTGTACATAACAACAAACCTTTTTCTCGCCATGTCAGTTGTTTATTGT
TTATTCTGATCGAATAAATTGGTAGTACTAACCTCTGGTCTACTTTAGGC
GTGCAAACTTTCGGGAGCAGAAACTTTCNGTACTAACCTCTggtctactt
taggcgtacaaatttTCGGGAGCAAAAACTTTTGcggttttcgcgaattt
tggctcttttcgcgaatgtctttaaaaattctaggaagggtcattcgcga
aagtttatgctcgcgaaaaattcttgacaaaatagaaaacctgtaaaact
tcaaactttgaataaaatgtaacttttatggcaatAGCTAAAAGACtcat
aagtcaaaggacaaatgtttcaagccaatccaagaagtatttgtccctct
aagccattttttcatgtgaaaattctcaattttacgtcttaattcgcgaa
agtaaatgtcgtgaatttcgcgatttttcgtcctagcgaaagtttgtacg
cctaaagtactttaTATAAGATTTCTGTGGAACAAACAAATACGAATGTT
AGAGCGTGTTTGGCCTTGAAAGTTTCTTTGTGGTCAAATCACTAACATTT
TCGATAGAATAAACCTTAttagagtttttgattttctaaaaaagcgatgc
attgtgggattgtttcgagtgtattacaatagaaatgtcttaggaattcc
tcgagggaattctattgtaatacactcgaaacaaccccacaatacatcgc
ttttttagaaaaatcaaaaactacgATAAGGTCTATTTATAATCACGCCT
TGAGTGATTCGATGCTGAAGTTTATGTTGAGCTATAAACATTACGTTTCG
GTAAAACGTTTTTTGCGTCGAAAATTGTATATATTAtaagtttaattttt
atttaGCATTTACTGTGGGAAAAGAAAGTCAAATAGAA
Run BLAST on NCBI

transcript from alignment at sc0000205:363033..367251+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015212 ID=TCONS_00015212|Name=TCONS_00015212|organism=Clytia hemisphaerica|type=transcript|length=4219bp|location=Sequence derived from alignment at sc0000205:363033..367251+ (Clytia hemisphaerica)
CAAAATGTTGCAGATGGTGCTACAAGGTTGTATTGGTACTACTGTTAATC
AGGTACGTCGTGTAACAGGGGTCTTATAAAGCTGTTCGAGGGTAGAAATC
GAAGGGACTTTAGGATTCATTTGAGCTTTCTTTCCATTAAAATCCAGAAA
TGGTGTTTAAAGGTTATTTCCGTACCATGGTTAATTAGCTTGAAATTTga
tcttccaattttttttgaaataatttttgcagGGACCATTCGAGATTGCT
AACGTTTTCCTGTCAGACTTCGAAAAAGATCGAAATGGCGTCTCCAACAT
TACTCGCCATCATCACAAATTGAGGTTGTGCTTCAAAGAGTTCGTCAAAA
GGTTTGTCAATCATCTTAACTGTGTAGTCTAGATAATGTAGATAAGCGAT
gcacattgggcttttccagaaaaaaaccgtgcaccgtGCACcgtgttgag
gaggtccaaccttttgtgacctaccccctattgaattccgaatttttaca
aattttcaatcattactcCCTTGGGATTCCGCTTacttttgacggatttt
cgtctacccttatggaattccactgcatttcaaaccttaccccttGGAAc
agaaatggacctcctcaacagggggtgcaggatttttttctggaaaagcc
cattgaatAATGTGAGAGATATAACCATTATCTATTAGAAAGGAAAGGTA
CACTAGTTACACATTTTGGAAAGTATCTGAGAGAGCTTTTACTTATATTA
TAATTGGGAGGAAGTCTGCTTTAAGTTGTGtttcaaagaattgaaattcg
atATACATGCTTTCATCATAGAAgagttcccagctggcacacaacgttgt
ttcaacgtttatctaacgttcacaacgtccatataacgttagatgaacgt
taaaacaacgttgtgtgccagctgggttgttACAGACTCCTCACGCGCAT
AGATACACACTATTATTTTTACCACATAGAATAaacgaataaacgccccc
tcgaattaacgcccctcctaaaatcctaaaaaataaCCAACGCCCGGGTG
TGCGTTCACAATAATACGATAACCTCTTTTTCCATCAGGTGTACCGACGC
CTTTTTTCCAATATGCATCGTACTTGTTACGGTATAAGATAAACGAATAA
ACGTCctcctaaaatccaaaaatacGATAAATGACGTCCGAGGCGCTTAT
TCGAAATAATACGGTAATCTCTTTTCTTCCTTCAGGTGTAGCGACGCTCT
TTCTCTCAACAAATCTCTCATCTCACAAGATCAACGAGCCTACCAAAAAG
AGTTGGAAAGAAACTACCACACTTTCGTGGAAAAGTTGGAACCACTTCTC
AAAAGCAAGTTTGGTCAACTCCGAGGCTCTCTTAGAAGGTAAGGCTGATT
CTATTTTATAGGGCTTTTGTTATTGAACAAgctttttaattaaattacag
ttatctctctctaattcgaacctaaTTATTCGAACCTTTCTCTAATACGA
ATAAATTTTTTGGCCTCTTGAAGATAGAATTAGAGGGAGTCAAACTCACA
AAGAAAACTTCCATTAATTTCAAAGTAAGTTTACTGTCCGTAAAAAATGT
ACTCTCGGGTGCTTATAAACGCCCAGAGTGTCAACTTTTCAAAGCATATG
TAAAGGTTTGAAAATACTTTTCACTGTCAATAGAAAAGTCCTTTAttcga
ggcaagtgatgtttcgTGTCGCAATTTATGAAAATACTTATTCACAATTT
AAACTATTTTGATCGAtttgaacaaaagaaaaaggcaacaagataaatta
aatttgaatctTTCCAACGCTGACCAGATTTGTGCTAAAGAGCGATTTTC
CCTTCCTTGAGGTACCCGCCTTACAGAGAATCCCTCATCCCTCATCGGCT
TACAAAATTTTGTAAGcctaaataaaattttgatattagAGCTTCATTGA
GATCTATAGTGGAAAAAAAAGCTGTATCTTTTGTTGGGATTTGAATTAGA
AAGTGAATTCATGCTCGTCACTTTTTGTTTTCAGGGAAGGCAGCTCACAA
ATAAAAGCGCGTCCAGTTTCACTCAATGTTGACCCTCATTCAAGTAACAT
ATGAGAATGGCAAAAGAAGACTTTAGTATTAGACTTTATCACGGCCAACT
TTCTCGAACGTACAAGCCCATTGGTAACAATAAATGAGCGGTGAACTAAC
AGAATACCGCTATCAAACATGACGCCTGTATGAAAATGTTCTCTGACTNC
TAGCAGAATACGGCTATCAAACATGACGCCTGTATGAAAATATTCTCTGA
CTGATGGATTGTCTCAtggtacacccctgtctcacagccccggtgaaacc
tTTTCCCACAAGTGGGTAGAAATTTCTATCCAAATcttaatggggataga
aattttattcttcccagctcaaaaaatccagtggggtggaatgctttttt
tttttcactgggAATAaagttttgaccaaatttttaaTTAGGGCGGGGGT
TCCACCGGTGTGGCACACGGGGTATCAATTGATTGAGCGTCAAATAATTG
GAAATGAATGCAGAACGCTTTTACTAAAGCTTAACTTACTCAAACATTGA
ATAAAGCNAAATAATTGGGAATGAATGCAGAACGCTTTTACTAAAGCTTA
AGTTATTCAAACATTGAATAAAGTTTCACTATGTCTACCTGATGATAGTG
CGTGGATTTCAAACCTCACCTGTACATAATATTGTTTCcctttttcatta
aattttactCGCACCCTTTGCTCCCGATATGCGGTCTGGGTGAGGAGCTA
AACATTGACTTCCAAACCCGAatggctagactcgagactcctgaatggga
aatgaagccacttatttcccgtccagaacgcccgcgcttggtttttacac
aaacgccagattgaaactaaaatctatcgctagatttaaaaaaaaagcag
TCCTCAAAatcaaaggaaccgctagatataatccgtcgtcgtgattacgg
cgcgttctggatgggaaataagtggtttcaattttcttgcctgagaaagg
ttaaagattctactctagcccttcaggctttaaactcaatggaacTAACT
CGTGAAGAAACAAATTTGTACCCAGTCCCCTTACAACGAGTTTAAGTTTG
ATTGTTAATTTCCgtttacctttttttaattgttaatttagatgatttat
ttttttccatttttcaatttgataattttttatttcctaAGTCACCCTTC
CAGAAAGCATTCACAAAGTTTACGAAAATTGTATTGTACATAACAACAAA
CCTTTTTCTCGCCATGTCAGTTGTTTATTGTTTATTCTGATCGAATAAAT
TGGTAGTACTAACCTCTGGTCTACTTTAGGCGTGCAAACTTTCGGGAGCA
GAAACTTTCNGTACTAACCTCTggtctactttaggcgtacaaatttTCGG
GAGCAAAAACTTTTGcggttttcgcgaattttggctcttttcgcgaatgt
ctttaaaaattctaggaagggtcattcgcgaaagtttatgctcgcgaaaa
attcttgacaaaatagaaaacctgtaaaacttcaaactttgaataaaatg
taacttttatggcaatAGCTAAAAGACtcataagtcaaaggacaaatgtt
tcaagccaatccaagaagtatttgtccctctaagccattttttcatgtga
aaattctcaattttacgtcttaattcgcgaaagtaaatgtcgtgaatttc
gcgatttttcgtcctagcgaaagtttgtacgcctaaagtactttaTATAA
GATTTCTGTGGAACAAACAAATACGAATGTTAGAGCGTGTTTGGCCTTGA
AAGTTTCTTTGTGGTCAAATCACTAACATTTTCGATAGAATAAACCTTAt
tagagtttttgattttctaaaaaagcgatgcattgtgggattgtttcgag
tgtattacaatagaaatgtcttaggaattcctcgagggaattctattgta
atacactcgaaacaaccccacaatacatcgcttttttagaaaaatcaaaa
actacgATAAGGTCTATTTATAATCACGCCTTGAGTGATTCGATGCTGAA
GTTTATGTTGAGCTATAAACATTACGTTTCGGTAAAACGTTTTTTGCGTC
GAAAATTGTATATATTAtaagtttaatttttatttaGCATTTACTGTGGG
AAAAGAAAGTCAAATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008507XLOC_008507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015212-exon-sc0000205-1491911889:363033..363084TCONS_00015212-exon-sc0000205-1491911889:363033..363084Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:363033..363084TCONS_00015212-exon-sc0000205-1510915933:363033..363084Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:363033..363084TCONS_00015212-exon-sc0000205-1575043694:363033..363084Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1491911889:363265..363383TCONS_00015212-exon-sc0000205-1491911889:363265..363383Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:363265..363383TCONS_00015212-exon-sc0000205-1510915933:363265..363383Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:363265..363383TCONS_00015212-exon-sc0000205-1575043694:363265..363383Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1491911889:364268..364420TCONS_00015212-exon-sc0000205-1491911889:364268..364420Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:364268..364420TCONS_00015212-exon-sc0000205-1510915933:364268..364420Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:364268..364420TCONS_00015212-exon-sc0000205-1575043694:364268..364420Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1491911889:365067..365250TCONS_00015212-exon-sc0000205-1491911889:365067..365250Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:365067..365250TCONS_00015212-exon-sc0000205-1510915933:365067..365250Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:365067..365250TCONS_00015212-exon-sc0000205-1575043694:365067..365250Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1491911889:365305..365627TCONS_00015212-exon-sc0000205-1491911889:365305..365627Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:365305..365627TCONS_00015212-exon-sc0000205-1510915933:365305..365627Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:365305..365627TCONS_00015212-exon-sc0000205-1575043694:365305..365627Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1491911889:365695..367251TCONS_00015212-exon-sc0000205-1491911889:365695..367251Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1510915933:365695..367251TCONS_00015212-exon-sc0000205-1510915933:365695..367251Clytia hemisphaericaexon
TCONS_00015212-exon-sc0000205-1575043694:365695..367251TCONS_00015212-exon-sc0000205-1575043694:365695..367251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:363033..367251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481614	0.0529151	0.771676	1.98166	0	0	0	0.0627366	0.238568	0.458909	0.526762	0.180248	0.191783	0.205891	0.074741	0.251944	0.30579	0.214212	0.137129	0.255418	0.0647773	0.108213	0.12932	0.0590028	0	0	0.140152	0.622549	0.154859	0.19976
Blast
[Close]
BLAST of TCONS_00015212 vs. Swiss-Prot (Human)
Match: DOCK7 (Dedicator of cytokinesis protein 7 OS=Homo sapiens GN=DOCK7 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 1.292e-31
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 2 
Query:    2 KMLQMVLQGCIGTTVNQGPFEIANVFLSDFEKDRNGVSNITRHHHKLRLCFKEFVKRCSDALSLNKSLISQDQRAYQKELERNYHTFVEKLEPLLKSKFGQL 307
            KMLQMVLQG +GTTVNQGP E+A VFLS+   D      + RHH+KLRLCFK+F KRC DAL  NKSLI  DQ+ YQ+ELERNYH   E L+PL+  K  QL
Sbjct: 2019 KMLQMVLQGSVGTTVNQGPLEVAQVFLSEIPSD----PKLFRHHNKLRLCFKDFTKRCEDALRKNKSLIGPDQKEYQRELERNYHRLKEALQPLINRKIPQL 2116
The following BLAST results are available for this feature:
BLAST of TCONS_00015212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DOCK71.292e-3162.75Dedicator of cytokinesis protein 7 OS=Homo sapiens... [more]
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