|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015210 ID=TCONS_00015210|Name=TCONS_00015210|organism=Clytia hemisphaerica|type=transcript|length=4227bpRun BLAST on NCBI transcript from alignment at sc0000205:312928..343890+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015210 ID=TCONS_00015210|Name=TCONS_00015210|organism=Clytia hemisphaerica|type=transcript|length=30963bp|location=Sequence derived from alignment at sc0000205:312928..343890+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015210 vs. Swiss-Prot (Human)
Match: DOCK7 (Dedicator of cytokinesis protein 7 OS=Homo sapiens GN=DOCK7 PE=1 SV=4) HSP 1 Score: 951.044 bits (2457), Expect = 0.000e+0 Identity = 581/1387 (41.89%), Postives = 814/1387 (58.69%), Query Frame = 3
Query: 81 GKERAFAQRLHRNTTSQTPSAASIPGDRRSQISRISFSEIQNYQTGITPTYQDVVDPLDFEEFILQHQPLADDSSTIAVLSEFPDDDIEVTSIQRKSRTVGLTVPDVLHSSNDPLVKDCVKSYTDDWSIVNRKYQVKGFGGKQKQRSRMDSSTQRLHKHEYEVDER--------KENDGKNNRQLLQATPRGSWASSIFDLQSCQPDPLLQGLLDNIPIEDVDKQNKVFREKNRVSSIFSIFPQNEEEQFVTRAPAV-IPQEHVGQRILVRCTELKLELDIEPIFATMALYDCKQKRKISENFHFDMNQDWHKKMLSPYNKGKIDISTLAKSCIFSVTYPSSXXXXXXXXXXXXQQGDITECAEPYMKDTESQKSREKAR-----AQAEQFCGRNGEYRMPFAWTAIHLVDVITGASAAEPPSSNNEKDQPSPKDPVXXXXXXXXXXXXXXXXXXEGVSRRVSNSSEVGKPGVNRYSHERPSREAEENSVDLANFRAISLTVSTFFKQESEKLSDEDLFKLLADLRRPNSLLRKLKCITGLLKLDITPPQENLKYCLTPELIPVAPYPDKQGAPVKEVQEFAPREVFVPYVTYRNTLYIYPESLNFSNRTGSARNIAVKVQFLEGEDVQNHALACIYGKSSGPEFVKEIFTPVVYHNKTPYFYEEVKVKLPAQLGEQHHFLFTFYHVSFKTESGGPIESTPVGCTWIPALKDGRLNLGEFALPVAADKLPQSYSMLAPDVQLPNMKWVDGHKPVFSCSLHTESSVHPQDFYLHRFFKLCHSLEGRL---QNASNKSQESNMEANLHKYIKDLEKAQLEPLVRFLHLVLDKLFTLLVRPTAISGTVVNVSQFAFDALTLIVHRVHELPTAEQDKHGHNNLLASYVSYFFNTPGSGTPIASPKDSPTLPKNHSEMFENF---PPSLN-QHNRNMSNSNPTIHEQSKGHNKSV-SMVGEAWMDDVMKYDNIAG--------NXXXXXXXXXXXXXHNTPFASH----------------RKLVHEELALQWAVAKQPYKERASEHAWFYFTIMAKSMAQYLDLADKLFFYRKERFQERFLDDLIALVNTVVTEIIHKSENKMHHSARRLNTSLAFFLNDLLSLMDRGFVLKRVASYLKEMQQAGAAIEKG--LTFLKLEFLHILCSHEHHVVLNLPFPIETEEKEQXXXXXXXXXXXXAGSSMLSMIGRDPGTIPELSFIFREQHFLVGQLLCELKNSFDTND---LDIMTDAVEVLRDIISTHDQDSRYESSLCRGRVASLYLPLIGVAMEVLPYLHGYESDRDEQ-----------------LINENVANAIANSSVLSKSSTGD-LQSQMSSTKLTKLSIDATRHFLMCFMWVLKNLGEDQLKQWIS 4034
+ RAFAQ++ R ++ S Q+ + + + + N T + VDP+D E++++ H PLA DS + L EFP DDIEV R RT+ VP+ S DP V+DC++SYT+DW+IV RKY G G + + L K +E DE ++D K + TPRGSWA SIFDL++ PD LL LLD P E++D+QN R+ NR +F++ P +EE+ + R IP+EH GQR+LV+C LK E++IEPIFA++ALYD K+K+KISENF+FD+N + K +L P+ I+TLA+S IFS+TYPS +V LV+KLEKVLQQGDI ECAEPYM E+ ++ K + +QA+QFC R G+YRMPFAWTAIHL+++++ A + E S+ E K G NSS VG+ + R + + +++ +L +FR +LTV+ FFKQE ++LSDEDL+K LAD+RRP+S+LR+L+ IT LK+DI+P EN YCLTPEL+ V YPD + P +E+ EF R+V+VP TYRN LYIYP+SLNF+NR GSARNI VKVQF+ GED N A+ I+GKSS EF KE +T VVYHN++P F+EE+KVKLPA L + HH LFTFYHVS + + P+E TPVG TWIP L++GRL G+F LPV+ +K PQ+YS+L+P+V LP MKWVD HK VF+ + SS+H QD YL +FF L ++L+ L + + E+N+E L I L +QLEP+VRFLHL+LDKL L++RP I+G +VN+ Q +F+A+ I++R+H+ D+HG N+LLASY+ Y F P + +SP H P SLN +R++SNSNP I + V S++G +D + N G N S AES+ + +SH +KL HEELALQW V +E A + AWF+F +M KSM +L DKL RK RF ERF+DD+ ALV+T+ ++I+ + + K RLNTSLAFFLNDLLS+MDRGFV + S K++ ++ L L+L+FL I+CSHEH+V LNLP + T S S S S+ ++ + + ELS FR+QH+L G +L EL D + + + ++ +++S+HD D RY + RVA LYLPLIG+ ME +P L+ + +++ +I++ VA AIA +SV + G L + S + T S +++R L+C +WVLKN E L++W +
Sbjct: 2 AERRAFAQKISRTVAAEVRKQISGQYSGSPQLLK-NLNIVGNISHHTTVPLTEAVDPVDLEDYLITH-PLAVDSGPLRDLIEFPPDDIEVVYSPRDCRTLVSAVPE--ESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFESDEAPDGNSYQDDQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDRQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDIPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAA-ITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERK----------------------GSWSERRNSSIVGRRSLERTT-------SGDDACNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSN-AMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLE-TPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYLDKFFALVNALDEHLFPVRIGDMRIMENNLENELKSSISALNSSQLEPVVRFLHLLLDKLILLVIRPPVIAGQIVNLGQASFEAMASIINRLHKNLEGNHDQHGRNSLLASYIHYVFRLPNTYPNSSSPGPGGLGGSVHYATMARSAVRPASLNLNRSRSLSNSNPDISGTPTSPDDEVRSIIGSKGLDRSNSWVNTGGPKAAPWGSNPSPSAESTQAMDRSCNRMSSHTETSSFLQTLTGRLPTKKLFHEELALQWVVCSGSVRESALQQAWFFFELMVKSMVHHLYFNDKLEAPRKSRFPERFMDDIAALVSTIASDIVSRFQ-KDTEMVERLNTSLAFFLNDLLSVMDRGFVFSLIKSCYKQVSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQSSGFST--NVQDQKIANMFELSVPFRQQHYLAGLVLTELAVILDPDAEGLFGLHKKVINMVHNLLSSHDSDPRYSDPQIKARVAMLYLPLIGIIMETVPQLYDFTETHNQRGRPICIATDDYESESGSMISQTVAMAIAGTSVPQLTRPGSFLLTSTSGRQHTTFSAESSRSLLICLLWVLKNADETVLQKWFT 1349 The following BLAST results are available for this feature:
BLAST of TCONS_00015210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.