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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015209 ID=TCONS_00015209|Name=TCONS_00015209|organism=Clytia hemisphaerica|type=transcript|length=2356bpRun BLAST on NCBI transcript from alignment at sc0000205:312928..329555+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015209 ID=TCONS_00015209|Name=TCONS_00015209|organism=Clytia hemisphaerica|type=transcript|length=16628bp|location=Sequence derived from alignment at sc0000205:312928..329555+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015209 vs. Swiss-Prot (Human)
Match: DOCK7 (Dedicator of cytokinesis protein 7 OS=Homo sapiens GN=DOCK7 PE=1 SV=4) HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0 Identity = 363/772 (47.02%), Postives = 491/772 (63.60%), Query Frame = 3
Query: 81 GKERAFAQRLHRNTTSQTPSAASIPGDRRSQISRISFSEIQNYQTGITPTYQDVVDPLDFEEFILQHQPLADDSSTIAVLSEFPDDDIEVTSIQRKSRTVGLTVPDVLHSSNDPLVKDCVKSYTDDWSIVNRKYQVKGFGGKQKQRSRMDSSTQRLHKHEYEVDER--------KENDGKNNRQLLQATPRGSWASSIFDLQSCQPDPLLQGLLDNIPIEDVDKQNKVFREKNRVSSIFSIFPQNEEEQFVTRAPAV-IPQEHVGQRILVRCTELKLELDIEPIFATMALYDCKQKRKISENFHFDMNQDWHKKMLSPYNKGKIDISTLAKSCIFSVTYPSSXXXXXXXXXXXXQQGDITECAEPYMKDTESQKSREKAR-----AQAEQFCGRNGEYRMPFAWTAIHLVDVITGASAAEPPSSNNEKDQPSPKDPVXXXXXXXXXXXXXXXXXXEGVSRRVSNSSEVGKPGVNRYSHERPSREAEENSVDLANFRAISLTVSTFFKQESEKLSDEDLFKLLADLRRPNSLLRKLKCITGLLKLDITPPQENLKYCLTPELIPVAPYPDKQGAPVKEVQEFAPREVFVPYVTYRNTLYIYPESLNFSNRTGSARNIAVKVQFLEGEDVQNHALACIYGKSSGPEFVKEIFTPVVYHNKTPYFYEEVKVKLPAQLGEQHHFLFTFYHVSFKTESGGPIESTPVGCTWIPALKDGRLNLGEFALPVAADKLPQSYSMLAPDVQLPNMKWVDGHKPVFSCSLHTESSVHPQDFYL 2354
+ RAFAQ++ R ++ S Q+ + + + + N T + VDP+D E++++ H PLA DS + L EFP DDIEV R RT+ VP+ S DP V+DC++SYT+DW+IV RKY G G + + L K +E DE ++D K + TPRGSWA SIFDL++ PD LL LLD P E++D+QN R+ NR +F++ P +EE+ + R IP+EH GQR+LV+C LK E++IEPIFA++ALYD K+K+KISENF+FD+N + K +L P+ I+TLA+S IFS+TYPS +V LV+KLEKVLQQGDI ECAEPYM E+ ++ K + +QA+QFC R G+YRMPFAWTAIHL+++++ A + E S+ E K G NSS VG+ + R + + +++ +L +FR +LTV+ FFKQE ++LSDEDL+K LAD+RRP+S+LR+L+ IT LK+DI+P EN YCLTPEL+ V YPD + P +E+ EF R+V+VP TYRN LYIYP+SLNF+NR GSARNI VKVQF+ GED N A+ I+GKSS EF KE +T VVYHN++P F+EE+KVKLPA L + HH LFTFYHVS + + P+E TPVG TWIP L++GRL G+F LPV+ +K PQ+YS+L+P+V LP MKWVD HK VF+ + SS+H QD YL
Sbjct: 2 AERRAFAQKISRTVAAEVRKQISGQYSGSPQLLK-NLNIVGNISHHTTVPLTEAVDPVDLEDYLITH-PLAVDSGPLRDLIEFPPDDIEVVYSPRDCRTLVSAVPE--ESEMDPHVRDCIRSYTEDWAIVIRKYHKLGTGFNPNTLDKQKERQKGLPKQVFESDEAPDGNSYQDDQDDLKRRSMSIDDTPRGSWACSIFDLKNSLPDALLPNLLDRTPNEEIDRQNDDQRKSNRHKELFALHPSPDEEEPIERLSVPDIPKEHFGQRLLVKCLSLKFEIEIEPIFASLALYDVKEKKKISENFYFDLNSEQMKGLLRPHVPPAA-ITTLARSAIFSITYPSQDVFLVIKLEKVLQQGDIGECAEPYMIFKEADATKNKEKLEKLKSQADQFCQRLGKYRMPFAWTAIHLMNIVSSAGSLERDSTEVEISTGERK----------------------GSWSERRNSSIVGRRSLERTT-------SGDDACNLTSFRPATLTVTNFFKQEGDRLSDEDLYKFLADMRRPSSVLRRLRPITAQLKIDISPAPENPHYCLTPELLQVKLYPDSRVRPTREILEFPARDVYVPNTTYRNLLYIYPQSLNFANRQGSARNITVKVQFMYGEDPSN-AMPVIFGKSSCSEFSKEAYTAVVYHNRSPDFHEEIKVKLPATLTDHHHLLFTFYHVSCQQKQNTPLE-TPVGYTWIPMLQNGRLKTGQFCLPVSLEKPPQAYSVLSPEVPLPGMKWVDNHKGVFNVEVVAVSSIHTQDPYL 737 The following BLAST results are available for this feature:
BLAST of TCONS_00015209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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