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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015192 ID=TCONS_00015192|Name=TCONS_00015192|organism=Clytia hemisphaerica|type=transcript|length=1494bp
CCAATTTGACTCGATTAGTAGTTTATTTACATTGACGATGAAGTGTTTTC
TTCTTTAGGTCAAAAAAGGTTATCGAGACGGACGTAAAcaatgacaaaat
ttttttcgattgatgctgaattttaatgattttgatGCTTTTCCTGttat
gatttttcatttttctgatatcttttggcattgtaTAGATTTTTCATACC
TGGCTTACAAAAAGGTCATTCATCATCTCATTtGAACCAAAATTATGCAG
TTTGACATTCGTCGCTTTGATATTTATCGCAAGATCCCAAAGGATCTGAC
ACAACCAACAAAAACTGGCGCTTGTGTTTCTATTCTAAGTATCATCTTTA
TTGTGTTTTTGATGCTATCAGAACTTTCAAGTCTGTTATTCATTGATGTC
AAAAGTGAAATGTTTGTGGATATTTCATCATCACAAAAACCAGTTTACGT
TAGATTAAATGTATCTTTACCAAAGATGGCTTGTGATTTTGTTGGGCTTG
ATCTTCAAGATTCTCAAGGGAGACACGAAGTTGGATTTTTGAAAGATTCA
AAGAAAGTTCCTATAAATAATGGAGAAGGATGTCGATTTGAAGGTCATTT
TGAAATAAACCGAATCCCTGGTAATTTTCATCTTTCAACACATAGTGCAG
CACAACAGCCACAGAACCCAGATATGACACATATTGTTAATTCTTTACAA
TTTGGCGACATCATCGAGACAACAGGTGCTTTCAATGCAATGGGAGAATT
AGATATGACTGAATATCCAGCAATGGCAACTCATAattacgtcatcaaaa
tcgtcCCAACCAAGTTCAAGCGTCTTTCAGGTCAGATTGAAGACACTTTT
CAATATTCGTATGCACAAAAAGAATTCATTGCTTATAATGGTCACCGACA
ACAACTAATGCCTGCTATTTGGTTTAAGTATGATTTCAACCCAATCACCA
TTCAGTACACTGAACAAAGGCAACCCTTTTATCACTTCATCACAATGTTT
TGTGCTATTATTGGTGGCACTTTTACAGTTGCAGGTATTATTGATACAAT
TATTTATACAGCACACAACATCATAAAGAAAGCTGAGATTGGAAAGTTAT
CATGAGTgttgaaaatttaaatctttTCGTACAATTTAAACTCGTATATG
TTGAATTTTATGTCAGAcacttttagaaattttgttttagaaaaaGATGT
ATGAGATTTTAGACCTTCTATAAAAAcagtatatatataaaagtttAGGA
TTTGCTCTgtattttgctttattttgaacATGCTTgtacagtagcgtaga
caagacgGGTGCACAATTTATGTTAGATAGTATGTTTTATAGCACAGTAA
TTAGCTTTTTATATCATGAATGGATGATAATAGTGTCAAATCTGATCTCC
Aacacaaattttgcacccctcgggtaacttaatgcatgtcctagaattgc
attaatttttccgccccagttccagtccctaaaccataacaaac Run BLAST on NCBI transcript from alignment at sc0000205:229334..232914+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015192 ID=TCONS_00015192|Name=TCONS_00015192|organism=Clytia hemisphaerica|type=transcript|length=3581bp|location=Sequence derived from alignment at sc0000205:229334..232914+ (Clytia hemisphaerica)
CCAATTTGACTCGATTAGTAGTTTATTTACATTGACGATGAAGTGTTTTC
TTCTTTAGGTCAAAAAAGGTTATCGAGACGGACGTAAAcaatgacaaaat
ttttttcgattgatgctgaattttaatgattttgatGCTTTTCCTGttat
gatttttcatttttctgatatcttttggcattgtaTAGATTTTTCATACC
TGGCTTACAAAAAGGTCATTCATCATCTCATTtgtaagtttatttttcaa
atctatATATTGTTTACAACGAAATGTAGTGATAAAAAAGCCTCTAggta
tttattattttattagtaCAAAAAAAAGCATGTACATCTCTTAGTAGCTT
AAATAGTTAAATGTCAATAAAAGAAACCAATAATCCAGTTCTACATTACT
CTATTATCTTACCAGTTATATACAGTaatttggtctaatgtcgacatccc
cttctaattttgacacccttcttttcACTTTTGGAATGGGAATCTGATgg
aactatttttctttgcttagcaatcagagaggaaaaaatcttttgtctat
aaGACTGTAAGGGATCCAAACAGTCTTACTAATACTACTTCATGCTAATA
TCTTTCtcatatttctatttctatttggttgagtcgcaggaggctttgag
gcctatttttcgcaactatagatacTTTCAATGAGCGcgccgtcagcacc
ttggactgactacccaattcccctcacatggcatgggttgacccaggcga
aggttcattcacttgccaagtgaaacGCTGCGAGTTGGAATcaaacctca
gtcgcctgtgtgCACTAagcaaggtcaatgaccactataccacagcgcct
caTATATTACCTTTCTTTCTGTCCTCGCTATCCCTGATTTCCTTTTTTGA
ACCCCTTCCCATTTTTATTCTCTTCATTTTGTTCATGTTCCTGTTTCTCT
TTATGTTTTCAGTTTTGATCCTGTCCCCATTTGTTCTCACCTTCCAAATA
TTCATCTTGTTCCAATTTTTACTCCCAGTTCCCATTTTTGATCAGGCgca
ttttgagagattttttcaggttttaatgacgtcataacccAAAATgccca
aaattttagccaattttcaaAGTTGTCCTGAGGCCTTATAACTCCtacca
tagaccttttttcaaagaggccaccctgttgaataattatgtagtccagc
agaaaaaattattacaatatgcatgatacagtagttatctatctatctat
atatttcagTAGTTAACAACATAAATGTTTGTTCTCCCTACATATAAAAG
CATTaacaaaaataagataaatgaAATTGGTTTAATAATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatgcatggctctatca
ttgtttttatggctggactacattattattcaacaggacgtcctctttga
aaaaaggtctattgaactCAGGGCTTATCTGACCCCCGCTATTGATGATC
TGATGGAAGctttgacgggggatataagccctggtacGCCTTAAAAACGT
ACTTTTGGGCATGATGCGAAACAGATGCCGATAAGCATAACCTCTCTggt
gagttagggcgtgtctagatttttaaaaatcccAAATCCCAaatccgcga
ccaatagcacccattctcagggattcatttatggatttttagatgaccta
tacctgaaggtttcaggacccggttgttacgtaattaaatattaacctaa
aaattaattatcaaagaaagtgtgaattatgacgtcatcaaattatggca
tcataaatcgtaaattagctctaactctataagtacatgtcgaatctttc
tcaaatttggaccaaagatgcatctttAAATGGTGTCAaacttttcaatt
aaaaatattttgaaatttttgacgacgtcagcaaaaaatgcaaaaaatcg
aaaaatgcaattttttgctgGCGTCATCAAATTTTCCCAAAACTTTTTTN
CTCTGaaagcaaaatcaaaacaatttccAAATAAACAAGGGAAAAAAGAT
TTTAGTATGTCTTTTCCacaagaaccagtaaattttcacAAAGTGAAAAC
tgcaaaatctctaaaaaaatcTTGGTGCCACaaaccaaaattttattttc
aaaatcaaaaccctAAGCAGAAATGAGTGAAAATATACTTTCaagattca
aaaaataaaatcaagttCATTTTATATCTTATTACTGCTTGGTGTAAAGT
AAATGTCATGctgaaaaaaagttaataataGGATTGCAATCAACTGactt
tttgttattatttatttCAGGAACCAAAATTATGCAGTTTGACATTCGTC
GCTTTGATATTTATCGCAAGATCCCAAAGGATCTGACACAACCAACAAAA
ACTGGCGCTTGTGTTTCTATTCTAAGTATCATCTTTATTGTGTTTTTGAT
GCTATCAGAACTTTCAAGTCTGTTATTCATTGATGTCAAAAGTGAAATGT
TTGTGGATATTTCATCATCACAAAAACCAGTTTACGTTAGATTAAATGTA
TCTTTACCAAAGATGGCTTGTGATTTTGTTGGGCTTGATCTTCAAGATTC
TCAAGGGAGACACGAAGTTGGATTTTTGAAAGATTCAAAGAAAGTTCCTA
TAAATAATGGAGAAGGATGTCGATTTGAAGGTCATTTTGAAATAAACCGA
ATCCCTGGTAATTTTCATCTTTCAACACATAGTGCAGCACAACAGCCACA
GAACCCAGATATGACACATATTGTTAATTCTTTACAATTTGGCGACATCA
TCGAGACAACAGGTGCTTTCAATGCAATGGGAGAATTAGATATGACTGAA
TATCCAGCAATGGCAACTCATAattacgtcatcaaaatcgtcCCAACCAA
GTTCAAGCGTCTTTCAGGTCAGATTGAAGACACTTTTCAATATTCGTATG
CACAAAAAGAATTCATTGCTTATAATGGTCACCGACAACAACTAATGCCT
GCTATTTGGTTTAAGTATGATTTCAACCCAATCACCATTCAGTACACTGA
ACAAAGGCAACCCTTTTATCACTTCATCACAATGTTTTGTGCTATTATTG
GTGGCACTTTTACAGTTGCAGGTATTATTGATACAATTATTTATACAGCA
CACAACATCATAAAGAAAGCTGAGATTGGAAAGTTATCATGAGTgttgaa
aatttaaatctttTCGTACAATTTAAACTCGTATATGTTGAATTTTATGT
CAGAcacttttagaaattttgttttagaaaaaGATGTATGAGATTTTAGA
CCTTCTATAAAAAcagtatatatataaaagtttAGGATTTGCTCTgtatt
ttgctttattttgaacATGCTTgtacagtagcgtagacaagacgGGTGCA
CAATTTATGTTAGATAGTATGTTTTATAGCACAGTAATTAGCTTTTTATA
TCATGAATGGATGATAATAGTGTCAAATCTGATCTCCAacacaaattttg
cacccctcgggtaacttaatgcatgtcctagaattgcattaatttttccg
ccccagttccagtccctaaaccataacaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015192-exon-sc0000205-1491911889:229334..229566 | TCONS_00015192-exon-sc0000205-1491911889:229334..229566 | Clytia hemisphaerica | exon |
| TCONS_00015192-exon-sc0000205-1510915933:229334..229566 | TCONS_00015192-exon-sc0000205-1510915933:229334..229566 | Clytia hemisphaerica | exon |
| TCONS_00015192-exon-sc0000205-1575043694:229334..229566 | TCONS_00015192-exon-sc0000205-1575043694:229334..229566 | Clytia hemisphaerica | exon |
| TCONS_00015192-exon-sc0000205-1491911889:231654..232914 | TCONS_00015192-exon-sc0000205-1491911889:231654..232914 | Clytia hemisphaerica | exon |
| TCONS_00015192-exon-sc0000205-1510915933:231654..232914 | TCONS_00015192-exon-sc0000205-1510915933:231654..232914 | Clytia hemisphaerica | exon |
| TCONS_00015192-exon-sc0000205-1575043694:231654..232914 | TCONS_00015192-exon-sc0000205-1575043694:231654..232914 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:229334..232914 + |
Blast
BLAST of TCONS_00015192 vs. Swiss-Prot (Human)
Match: ERGI1 (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 1.711e-110 Identity = 160/290 (55.17%), Postives = 216/290 (74.48%), Query Frame = 2
Query: 245 MQFDIRRFDIYRKIPKDLTQPTKTGACVSILSIIFIVFXXXXXXXXXXFIDVKSEMFVDI--SSSQKPVYVRLNVSLPKMACDFVGLDLQDSQGRHEVGFLKDSKKVPINNGEGCRFEGHFEINRIPGNFHLSTHSAAQQPQNPDMTHIVNSLQFGDIIETT---GAFNAMGELDMTEYPAMATHNYVIKIVPTKFKRLSGQIEDTFQYSYAQKEFIAYNGHRQQLMPAIWFKYDFNPITIQYTEQRQPFYHFITMFCAIIGGTFTVAGIIDTIIYTAHNIIKKAEIGKL 1099
M FD RRFDIYRK+PKDLTQPT TGA +SI +FI+FL LSEL+ + +V +E++VD S + V LN+SLP + C+ VGLD+QD GRHEVG + +S K+P+NNG GCRFEG F IN++PGNFH+STHSA QPQNPDMTH+++ L FGD ++ GAFNA+G D +A+H+Y++KIVPT ++ SG+ ++QY+ A KE++AY+ H +++PAIWF+YD +PIT++YTE+RQP Y FIT CAIIGGTFTVAGI+D+ I+TA KK ++GK+
Sbjct: 1 MPFDFRRFDIYRKVPKDLTQPTYTGAIISICCCLFILFLFLSELTGFITTEVVNELYVDDPDKDSGGKIDVSLNISLPNLHCELVGLDIQDEMGRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQPQNPDMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYS-HTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGKM 289
The following BLAST results are available for this feature:
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