TCONS_00015188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015188
Unique NameTCONS_00015188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015188 ID=TCONS_00015188|Name=TCONS_00015188|organism=Clytia hemisphaerica|type=transcript|length=1087bp
GCAAAAACTTACAATAAGTGGCTGGTACACTTAGATCTTCTTATTCCATA
AATACTCATATATTTGATTGGAAACTTAACACTGACACAACAATGAAGTT
AACAATCGTTGTTTTATGCCTTGTAATGGCAGGAGTCACGTATGCTGGAA
ATCAAGCAAaTTACTGTCAACCACCAAGTTGCTACAAAAGATTCCCTCCT
TACGCCAATCAATTATGTTTTAATCTCCATGGTCATCGAAGAGCCGTCGG
TTATTACCGTTATCCATTCAGCCCGCATCTTTTCTTCTACTGCAACAAAT
TCGGTGTGAACTCCGGAACTCAACAATGTCCAGCTGGTCTTTGGTTCTCT
GAAAAATGCGTTCAGTGCTTGAAGCCTTATGATGCCGTCAACAATGTTTG
CAGTAAGAGCTCTGGCGATGGTAGTGGACAATCAACAAACACTGATGCCA
ACTGTGCACCAGAAGGATTCTGTAAACACAAAGCTGATGGATTATACGCA
TTAAATTCATATTCTCCAAAATTCTTCTCTTGTGTCCAATGGAGAGCCAC
TCAATGTCAATCGTGTCCAGCTGGTCTTTATTTCAGCCAGAAATGTCAAG
TCTGTTTGGAAGAAGTACACCTTTCTACTTGCCCACCAAGAGGAGACAAC
TCACCAGCCTCTAAACCACCAAAATGTGCTAGCAACGATTTGTGTGAATG
GAAAACAGCCGGATATTACGCTTTTAGTGAAAACGCAAACCTCTTTTTCT
ACTGTAACGAAAACTACCAAAATGTTGGATGTCAGAGATGTCCAGCCAAC
TTGGTTTACAATCAAGCATGCGCTCAATGCTTACCCAAAGACCAACAAAA
GTGTGATGTACCATCTAAACCATCTAAACCAGCCGAAACTAATTTCTGTG
CACCAGAAGGATTCTGCAAACAACACTCCATCAAGCACAAACCATTGACC
TTCCTCTTTGCCGTGGAAGGAGACGCCTCGTCATTTTTCTCATGCAATCA
ACTCAAAGAAGCAACACAATGTTTATCTTGCCCTGCTGGTCTTGTCTTTA
ACGAAGTTTGTCAAGGATGTCGACAATTCAAAACTAG
Run BLAST on NCBI

transcript from alignment at sc0000205:124586..129737+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015188 ID=TCONS_00015188|Name=TCONS_00015188|organism=Clytia hemisphaerica|type=transcript|length=5152bp|location=Sequence derived from alignment at sc0000205:124586..129737+ (Clytia hemisphaerica)
GCAAAAACTTACAATAAGTGGCTGGTACACTTAGATCTTCTTATTCCATA
AATACTCATATATTTGATTGGAAACTTAACACTGACACAACAATGAAGTT
AACAATCGTTGTTTTATGCCTTGTAATGGCAGGAGTCACGTATGCTGGAA
ATCAAGCAAGTAAGTAAAATTTACTTTACCTCGACAATTCGAACACTATA
AGTCGATTGTCTTCATAATTCGAACTTCttcaactcgaacaaatttttta
aatttttataaagttGTTTATATTCTGAAACTCGAACACATTTCATTCCT
CTTCGTTCGTGTTCGACTTATGGAGACATCACCGTATCTCGCGATCTTTG
TTTAACGATATACTTTGATTTTTGATAGAATAAGTCATGCCCAAGTCTAA
GAATACTTTACTCAATATCTTAAGAACTCATTTTCAGAATAAGAATATCT
TTGAGAATATACGGTGTGTATAAAAATAAACCTCTggtgttttgatagat
ttttcGAATCTAATTGGTTCCTTGCAATTTTAGAGAATTAAACTTCATCA
TAACGaatttatcttttatttttattttcacagaTTACTGTCAACCACCA
AGTTGCTACAAAAGATTCCCTCGTAAGTAGAAAAAGCAAATTCCTCGAAA
TGCAAAAACCAGTACGTTAAAACTGAGCCTCAGACTTTAGCTCTCTTTTT
TGCAACCTTTATTTCCAACCagatttttgttggcgaaaacgTTTAGAACA
TCCCAGACTTAGTCGAAAATTTTTATCCAATCAGATTCAACTCGCTATAT
TGTAGCGAGCAGATAAACGGGAAGTTCTAAGCtttttcgccaacaaaaat
cataaaaaagaaataagtttatacctaaactacctttattgttctATTGG
GTAAAAATCATGTAATTTTAACATTTCTGAAATTaagctcagattgttct
taatttgttcttagatttttgaaaaaaaattaatctttaTTTATAGCTTA
CGCCAATCAATTATGTTTTAATCTCCATGGTCATCGAAGAGCCGTCGGTT
ATTACCGTTATCCATTCAGCCCGCATCTTTTCTTCTACTGCAACAAATTC
GGTGTGAACTCCGGAACTCAACAATGTCCAGCTGGTCTTTGGTTCTCTGA
AAAATGCGTTCAGTGCTTGAAGCCTTATGATGGTAAGACGAAGTTTTATT
ATTtgtacttttattttttgtcCCAATTCCGGTAAAATAACGTCTGACTT
CGTGTAGTATGAACAACTTTCTATGCAAGCTGATCCCAGCCACTGACCTT
TacataccctggaccaagtttatcaatcccAATCAAGCAAAATCTGAGCT
GATCggagctttttgaaaaatgatagcctaatggtagcactactcaatag
cggtgtaaatgcatcaaGAGCGCTAGGTCAACTTTCCctagaaaactttt
gatgatatgTAAAGGTCAGTGATCCCAGCCTTCCGCAATTCTAAAATCCA
TTTTCCTACCATTGACCTACCATGACTATCTAAACTTCAATAAGCGTTTG
TATATAGAAATTTCAAGATGGAAATTCCTGATAAATCTCCATGATCTATG
ACGATATTCATCTCTTTATCTCTGTCTTTTTTCAGCCGTCAACAATGTTT
GCAGTAAGAGCTCTGGCGATGGTAGTGGACAATCAACAAACACTGATGCC
AACTGTAAGTTGCCTTCTTTATCCCATAGAAATATCTAACTTTGAAAAAG
TTTAGCGGAATAACTTCGGAATAACGCACATTTCTTTACATTTATTTTTT
GTGCCGCCAAATTTTGATCTGAGATTGGATTTAGATGATTTTGCATTTTC
ACCAAGAGTATATGTTGATTCATCCTTTTACAAATTGGAGGGGGAACACA
AAAGAAACTTCAGAATAATATCTATCCCAAACAAAGGTCTCTCGTCCATC
AAATCTAGGCAAAGTTATAGGATATGCTATTCAATATAATTTTCTGAGTA
GACCCTGCTATCCCTCgcaaactacaatcatggacaaaaatgtttgagaa
aaacacaggagtttgcagtaaaaatgtagaaaaagaattatTCGTTCTTT
CAGAGATAAtatgtagacgataggatcgtctaatccCCAATACCAATAAT
TTTTCGTCCCTttcgttgtttcaacgttcatctaacgttatatggacgtt
gtgaacgttagatagacGATGAAACAATATTATTTCCTCCCTTCTCCAGG
TGCACCAGAAGGATTCTGTAAACACAAAGCTGATGGATTATACGCATTAA
ATTCATATTCTCCAAAATTCTTCTCTTGTGTCCAATGGAGAGCCACTCAA
TGTCAATCGTGTCCAGCTGGTCTTTATTTCAGCCAGAAATGTCAAGTCTG
TTTGGAAGAAGTACACCTTTGTAAGTTTTTCATAAAGCATTCTTCTATTT
CTCCGAAGCAAATCTATTTAGTAAATTCTCCGAGGAAACTCTTAAGAGTA
AAATTTCAACTTAATGCTATTAATGACGCCCTatatttttatgattctgt
ttaAACTGCTTACTAAAGGTTTTTGTGTCTAATTTATTTGTGAATTTTGC
TTGACTTCGCTAAAGATTTCAATGTCGGTCGACAGTGTGAATGTAAAAGC
GTCCGTAAAATTTCATCTCAAATTGAGAACTCGTTGTagtaatttctttt
tgaaatctaatcagtctttctttttttctttcaatcatAAAAAGCTACTT
GCCCACCAAGAGGAGACAACTCACCAGCCTCTAAACCACCAAAATGTAAG
TTTCTAGACTTTTTCCAAAGGCTAGATGTTTTCTTCTCTtcaatccaaaa
aaattcaCCTACCATGCCTTACCAGTGAGGAAAGTTGGGGTTGAATCCAA
CAATGTACCCTACAATCTGTGACttatttgaattaaaattttgtcGAAGG
AAATTAAATTCACGAATCAGACTTCTTCAGatatatttgtatttttatgt
AAGTTTCTATTTAAATCACTCTTAAATGGAACTGGGTAATCGAGTCTGAC
TATGAAAAGTTTTCACTCAAATCCCTCTCTCAAGTGGAACTTGATTATTT
ATTCTACAGATATATTTTCTCAATACTACCGAGTATTAAgcagcctctat
aagaaacACTTTTCACTAGAAGACGAGCAGAAGCTTAACTTTTTCCCTTA
ATGTTTCATAATATCACATTTTTCTTATTCTACGTTAACAGGTGCTAGCA
ACGATTTGTGTGAATGGAAAACAGCCGGATATTACGCTTTTAGTGAAAAC
GCAAACCTCTTTTTCTACTGTAACGAAAACTACCAAAATGTTGGATGTCA
GAGATGTCCAGCCAACTTGGTTTACAATCAAGCATGCGCTCAATGCTTAC
CCAAAGACCAACAAAAGTGTGATGTACCATCTAAACCATCTAAACCAGCC
GAAACTAATTTCTGTAAGTATCTAAACtaataatgattttttatttcttt
aaaatatctttccaatagcaaaaactggttttgaaGTGCCAAGAAACCAA
ATACAGAGGGATAAACTAAAATCCCATATATATAACTTATAAAGCAATAA
AAGTCTTCATTTTGAGCTATTGCAACTCTATAATAATTATAGTATTTAGG
ACGCACTCTGTCGGATAGAAAGTCATTTTTACTAATAAAGTGAAGGACCT
TTGCTAACGATATCTATTTATTCACTGTAGGTGAATTAGACAGGTCTTAA
TTTTTCTGTACACAATATTTATGCCTCTAATttgaacctctattattcga
atctctctgtaattcgaactaaaatatagGTCCCCTCAGCCGAAAAGCCG
TTTAAAATACTGTCTGTAATTTGAAACTTTCTCTAATCCGAATTAAATTC
TTGGTCTcttgaatatcgaattagagaaagtcaaCTCATAGTACAAGGTA
ACAGGAATAGTCGAAAATATGGCCACATTCAAAGCAAACACGTGTCTCCT
TTTAATAACAAAGGAACAAATTCTAATgatatcatttttatttgtgAGCG
TGTAAATCTCGCTAGAAACATTCACGACCACTACACTAGATTAgccgctc
aaaataatttagcaGTACGGCAAAACAGAAACAGATTTGAAGCAAAAACC
TTCGCAAGCTCTACAATTCCTATCTGGAATAACCTACCCAGGGAATGCCG
TGATGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGAAACAATTCTTGAGCTGTCTAAAAGCTCTAGAATTTTTCGGAGCCAGC
CACTTAAAACAttcgttattattattattattattattattatcatttta
TTCTATTTAAAGGTGCACCAGAAGGATTCTGCAAACAACACTCCATCAAG
CACAAACCATTGACCTTCCTCTTTGCCGTGGAAGGAGACGCCTCGTCATT
TTTCTCATGCAATCAACTCAAAGAAGCAACACAATGTTTATCTTGCCCTG
CTGGTCTTGTCTTTAACGAAGTTTGTCAAGGATGTCGACAATTCAAAACT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008502XLOC_008502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015188-exon-sc0000205-1491911889:124586..124744TCONS_00015188-exon-sc0000205-1491911889:124586..124744Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:124586..124744TCONS_00015188-exon-sc0000205-1510915933:124586..124744Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:124586..124744TCONS_00015188-exon-sc0000205-1575043694:124586..124744Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:125169..125207TCONS_00015188-exon-sc0000205-1491911889:125169..125207Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:125169..125207TCONS_00015188-exon-sc0000205-1510915933:125169..125207Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:125169..125207TCONS_00015188-exon-sc0000205-1575043694:125169..125207Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:125582..125767TCONS_00015188-exon-sc0000205-1491911889:125582..125767Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:125582..125767TCONS_00015188-exon-sc0000205-1510915933:125582..125767Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:125582..125767TCONS_00015188-exon-sc0000205-1575043694:125582..125767Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:126221..126289TCONS_00015188-exon-sc0000205-1491911889:126221..126289Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:126221..126289TCONS_00015188-exon-sc0000205-1510915933:126221..126289Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:126221..126289TCONS_00015188-exon-sc0000205-1575043694:126221..126289Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:126835..127005TCONS_00015188-exon-sc0000205-1491911889:126835..127005Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:126835..127005TCONS_00015188-exon-sc0000205-1510915933:126835..127005Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:126835..127005TCONS_00015188-exon-sc0000205-1575043694:126835..127005Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:127330..127380TCONS_00015188-exon-sc0000205-1491911889:127330..127380Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:127330..127380TCONS_00015188-exon-sc0000205-1510915933:127330..127380Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:127330..127380TCONS_00015188-exon-sc0000205-1575043694:127330..127380Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:127827..128048TCONS_00015188-exon-sc0000205-1491911889:127827..128048Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:127827..128048TCONS_00015188-exon-sc0000205-1510915933:127827..128048Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:127827..128048TCONS_00015188-exon-sc0000205-1575043694:127827..128048Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1491911889:129548..129737TCONS_00015188-exon-sc0000205-1491911889:129548..129737Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1510915933:129548..129737TCONS_00015188-exon-sc0000205-1510915933:129548..129737Clytia hemisphaericaexon
TCONS_00015188-exon-sc0000205-1575043694:129548..129737TCONS_00015188-exon-sc0000205-1575043694:129548..129737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:124586..129737 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365179	0.388878	0	0	0	4.91015e-10	0	0	0.102152	0.265421	0	0	62.6355	25.9331	14.6322	26.3256	2.19891	9.51617	0.139785	1.0866	0	0	0.138991	0	0.100333	0.069949	0	0	0	0.0825504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top