TCONS_00015169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015169
Unique NameTCONS_00015169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015169 ID=TCONS_00015169|Name=TCONS_00015169|organism=Clytia hemisphaerica|type=transcript|length=518bp
TCTATAGCGAGAAGAAAGGCTTTAAAAATGGGCTTTTAATTGTAATGGCG
CACGGCTGGAGGAGTGAAGATGAAGGAGATGCGCCACCAATGTTCACCAT
AGCCATCGTTTGTATAATGGTTTTAATTGCcatcttcttcttcgttttaT
TTTGTTACGTTTACAAGAAACATTCGGTTGCACGACAACAGATAACTAAC
CAAATTCAACAAGGCGTTCAACCTCACTTTCAACAAGGCAATACAATGAT
GAATCCAGCTTTTCACCAATATAACACCGATGGCTTTGCACCACCTCTCA
CAACACTGCCAAACAACAACGTAATGTTTGCTCCGCCACCTGGACCACCA
CCTGGACCACCACCCAgctacaaccaaaatttcatgccacAATCTGCAGG
ACAACCGACAGGGCTCTTCCAAATGAACACGAAATGGATCTAGCCATAAT
TTTGATAGTTAATACCATCTTAATAACCAGAAATTATTGCACACGAAAAA
TTACAACCTTAATCatac
Run BLAST on NCBI

protein sequence of TCONS_00015169-protein

>TCONS_00015169-protein ID=TCONS_00015169-protein|Name=TCONS_00015169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
YSEKKGFKNGLLIVMAHGWRSEDEGDAPPMFTIAIVCIMVLIAIFFFVLF
CYVYKKHSVARQQITNQIQQGVQPHFQQGNTMMNPAFHQYNTDGFAPPLT
TLPNNNVMFAPPPGPPPGPPPSYNQNFMPQSAGQPTGLFQMNTKWI
Run BLAST on NCBI

transcript from alignment at sc0000205:23540..24546+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015169 ID=TCONS_00015169|Name=TCONS_00015169|organism=Clytia hemisphaerica|type=transcript|length=1007bp|location=Sequence derived from alignment at sc0000205:23540..24546+ (Clytia hemisphaerica)
TCTATAGCGAGAAGAAAGGCTTTAAAAATGGGCTTTTAATTGTAATGGCG
CACGGCTGGAGGAGTGAAGATGAAGGAGATGCGCCACCAATGTTCACCAT
AGCCATCGTTTGTATAATGGTTTTAATTGCcatcttcttcttcgttttaT
TTTGTTACGTTTACAAGAAACATTCGGTTGCACGACAACAGATAACTAAC
CAAATTCAACAAGGCGTTCAACCTCACTTTCAACAAGGCAATACAATGAT
GAATCCAGCTTTTCACCAATATAACACCGATGGTAAGTTGTTTACTATTA
TACTCTCTTTGATGGATCCTTCATTTCAGGCAAAATAATCCCAAGGTTCA
CAAAAACCTGTACACTTTCTAGAGCATACCAACTtaactaaaaaaatgaa
aattaaaaaaagggacAATTTATGCTGGCAAAACAGACCAAATTATTGGA
GAAAATTTCTTTCAGGGTCATAAAAAACTCGAAAAGGAATAATTTTTGCC
TCGGACATCGCCACGTTCAACTCTAGTACCCTTAGGAAAATCTCCCAACA
TGACATTTTAATTCTTCTCAAGTAAGTATTTTATGACCGTACTCTCTTTG
TTGTATCCTTTTAATTCCCGTCAAAGAATCTAGTCAGTCTAGTTCAGTTT
AAAAAGatttaaatgttttcttttcaaaacacgACAAAAGGTCGGAGAAA
TTCATCATAACGCAAAACTAATACCCCTGGGAAAATCTCCCTACATGACA
TTTTCATTCTTCTCATGACAGGCTTTGCACCACCTCTCACAACACTGCCA
AACAACAACGTAATGTTTGCTCCGCCACCTGGACCACCACCTGGACCACC
ACCCAgctacaaccaaaatttcatgccacAATCTGCAGGACAACCGACAG
GGCTCTTCCAAATGAACACGAAATGGATCTAGCCATAATTTTGATAGTTA
ATACCATCTTAATAACCAGAAATTATTGCACACGAAAAATTACAACCTTA
ATCatac

Coding sequence (CDS) from alignment at sc0000205:23540..24546+

>TCONS_00015169 ID=TCONS_00015169|Name=TCONS_00015169|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000205:23540..24546+ (Clytia hemisphaerica)
TATAGCGAGAAGAAAGGCTTTAAAAATGGGCTTTTAATTGTAATGGCGCA
CGGCTGGAGGAGTGAAGATGAAGGAGATGCGCCACCAATGTTCACCATAG
CCATCGTTTGTATAATGGTTTTAATTGCcatcttcttcttcgttttaTTT
TGTTACGTTTACAAGAAACATTCGGTTGCACGACAACAGATAACTAACCA
AATTCAACAAGGCGTTCAACCTCACTTTCAACAAGGCAATACAATGATGA
ATCCAGCTTTTCACCAATATAACACCGATGGCTTTGCACCACCTCTCACA
ACACTGCCAAACAACAACGTAATGTTTGCTCCGCCACCTGGACCACCACC
TGGACCACCACCCAgctacaaccaaaatttcatgccacAATCTGCAGGAC
AACCGACAGGGCTCTTCCAAATGAACACGAAATGGATCTAGTATAGCGAG
AAGAAAGGCTTTAAAAATGGGCTTTTAATTGTAATGGCGCACGGCTGGAG
GAGTGAAGATGAAGGAGATGCGCCACCAATGTTCACCATAGCCATCGTTT
GTATAATGGTTTTAATTGCcatcttcttcttcgttttaTTTTGTTACGTT
TACAAGAAACATTCGGTTGCACGACAACAGATAACTAACCAAATTCAACA
AGGCGTTCAACCTCACTTTCAACAAGGCAATACAATGATGAATCCAGCTT
TTCACCAATATAACACCGATGGCTTTGCACCACCTCTCACAACACTGCCA
AACAACAACGTAATGTTTGCTCCGCCACCTGGACCACCACCTGGACCACC
ACCCAgctacaaccaaaatttcatgccacAATCTGCAGGACAACCGACAG
GGCTCTTCCAAATGAACACGAAATGGATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008497XLOC_008497Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015169-proteinTCONS_00015169-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015169-exon-sc0000205-1491911889:23540..23821TCONS_00015169-exon-sc0000205-1491911889:23540..23821Clytia hemisphaericaexon
TCONS_00015169-exon-sc0000205-1510915933:23540..23821TCONS_00015169-exon-sc0000205-1510915933:23540..23821Clytia hemisphaericaexon
TCONS_00015169-exon-sc0000205-1575043694:23540..23821TCONS_00015169-exon-sc0000205-1575043694:23540..23821Clytia hemisphaericaexon
TCONS_00015169-exon-sc0000205-1491911889:24311..24546TCONS_00015169-exon-sc0000205-1491911889:24311..24546Clytia hemisphaericaexon
TCONS_00015169-exon-sc0000205-1510915933:24311..24546TCONS_00015169-exon-sc0000205-1510915933:24311..24546Clytia hemisphaericaexon
TCONS_00015169-exon-sc0000205-1575043694:24311..24546TCONS_00015169-exon-sc0000205-1575043694:24311..24546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:23540..24546 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.114815	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.111009	0	0.131644	0	52.6369	18.4828	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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