TCONS_00015162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015162
Unique NameTCONS_00015162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015162 ID=TCONS_00015162|Name=TCONS_00015162|organism=Clytia hemisphaerica|type=transcript|length=744bp
AATCTTTCGGCGTCACTACTTTTTCCGTTGACACTGGAGCGACTTCGTGT
TTCTTCGAACAACTTTTTCGATGTCTTGTCCTGCCACTTTTGGTACGAAA
GATAGTCCCACATATGTCGCATGCATATTCCTCTGCAACCGGTGGAAGCA
TCGGCTGAGAAGGGGGGAGATTTTTGCCTTCCTTTGGTTCCTATTCCTGT
TGTACAGCATGCCTTGGGATCGAAAACATTCGGAAAAACGATTGTCCTTG
ATCCAATGATTTGGTCTCGGGGAATACGGATATCTCGTCTTTCTTCTCGG
TGTTTTTTGTTGGTGAATTGGTTGACATGTCGTCTTCGCTGCATCCACTG
GCCATTTTCTGCTTTCGATGATACCGGTAAAGAAAGAAAAGGCTGGAATG
GAGGCAGCAACACTTCGGCTAAAACGGGTGGTCCCCCAGGAGCAAGTCCT
GGTCTTCCAGCAGAGCCCGTAAGAGCCAAGAGAAATAAGAGTACGTTGAT
ACAAAAGAGACCAGCTTACAAGAAAAAGAGGGTAAGCTTTACGGAGCGGT
CACTTTGTATTGAGAGAGAATCTAACAATCAATTCTCTGATGATTTACCG
ATAAAAGCAGATCTTACAGCAGCGTCCGATAGTgatgatgaaaatgaaat
ccaaCCTCTGAAATCCGGCGTGGTTTTCCGTCGTTACGGAGTCGAATTTC
TAAGATCTTCTTCGCATCTTCTTTTGCAGCACAACCGTTACCGC
Run BLAST on NCBI

protein sequence of TCONS_00015162-protein

>TCONS_00015162-protein ID=TCONS_00015162-protein|Name=TCONS_00015162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MHIPLQPVEASAEKGGDFCLPLVPIPVVQHALGSKTFGKTIVLDPMIWSR
GIRISRLSSRCFLLVNWLTCRLRCIHWPFSAFDDTGKERKGWNGGSNTSA
KTGGPPGASPGLPAEPVRAKRNKSTLIQKRPAYKKKRVSFTERSLCIERE
SNNQFSDDLPIKADLTAASDSDDENEIQPLKSGVVFRRYGVEFLRSSSHL
LLQHNRYR
Run BLAST on NCBI

transcript from alignment at sc0000204:340791..341534

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015162 ID=TCONS_00015162|Name=TCONS_00015162|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at sc0000204:340791..341534 (Clytia hemisphaerica)
GCGGTAACGGTTGTGCTGCAAAAGAAGATGCGAAGAAGATCTTAGAAATT
CGACTCCGTAACGACGGAAAACCACGCCGGATTTCAGAGGttggatttca
ttttcatcatcACTATCGGACGCTGCTGTAAGATCTGCTTTTATCGGTAA
ATCATCAGAGAATTGATTGTTAGATTCTCTCTCAATACAAAGTGACCGCT
CCGTAAAGCTTACCCTCTTTTTCTTGTAAGCTGGTCTCTTTTGTATCAAC
GTACTCTTATTTCTCTTGGCTCTTACGGGCTCTGCTGGAAGACCAGGACT
TGCTCCTGGGGGACCACCCGTTTTAGCCGAAGTGTTGCTGCCTCCATTCC
AGCCTTTTCTTTCTTTACCGGTATCATCGAAAGCAGAAAATGGCCAGTGG
ATGCAGCGAAGACGACATGTCAACCAATTCACCAACAAAAAACACCGAGA
AGAAAGACGAGATATCCGTATTCCCCGAGACCAAATCATTGGATCAAGGA
CAATCGTTTTTCCGAATGTTTTCGATCCCAAGGCATGCTGTACAACAGGA
ATAGGAACCAAAGGAAGGCAAAAATCTCCCCCCTTCTCAGCCGATGCTTC
CACCGGTTGCAGAGGAATATGCATGCGACATATGTGGGACTATCTTTCGT
ACCAAAAGTGGCAGGACAAGACATCGAAAAAGTTGTTCGAAGAAACACGA
AGTCGCTCCAGTGTCAACGGAAAAAGTAGTGACGCCGAAAGATT

Coding sequence (CDS) from alignment at sc0000204:340791..341534

>TCONS_00015162 ID=TCONS_00015162|Name=TCONS_00015162|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000204:340791..341534 (Clytia hemisphaerica)
GCGGTAACGGTTGTGCTGCAAAAGAAGATGCGAAGAAGATCTTAGAAATT
CGACTCCGTAACGACGGAAAACCACGCCGGATTTCAGAGGttggatttca
ttttcatcatcACTATCGGACGCTGCTGTAAGATCTGCTTTTATCGGTAA
ATCATCAGAGAATTGATTGTTAGATTCTCTCTCAATACAAAGTGACCGCT
CCGTAAAGCTTACCCTCTTTTTCTTGTAAGCTGGTCTCTTTTGTATCAAC
GTACTCTTATTTCTCTTGGCTCTTACGGGCTCTGCTGGAAGACCAGGACT
TGCTCCTGGGGGACCACCCGTTTTAGCCGAAGTGTTGCTGCCTCCATTCC
AGCCTTTTCTTTCTTTACCGGTATCATCGAAAGCAGAAAATGGCCAGTGG
ATGCAGCGAAGACGACATGTCAACCAATTCACCAACAAAAAACACCGAGA
AGAAAGACGAGATATCCGTATTCCCCGAGACCAAATCATTGGATCAAGGA
CAATCGTTTTTCCGAATGTTTTCGATCCCAAGGCATGCTGTACAACAGGA
ATAGGAACCAAAGGAAGGCAAAAATCTCCCCCCTTCTCAGCCGATGCTTC
CACCGGTTGCAGAGGAATATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008490XLOC_008490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015162-exon-sc0000204-1491911889:340791..341534TCONS_00015162-exon-sc0000204-1491911889:340791..341534Clytia hemisphaericaexon
TCONS_00015162-exon-sc0000204-1510915933:340791..341534TCONS_00015162-exon-sc0000204-1510915933:340791..341534Clytia hemisphaericaexon
TCONS_00015162-exon-sc0000204-1575043694:340791..341534TCONS_00015162-exon-sc0000204-1575043694:340791..341534Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015162-proteinTCONS_00015162-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:340791..341534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301602	0.166244	0.553329	0.3052	0.0894275	0.0706668	0.0852565	0.0798161	0.191054	0.236621	0.201553	0.489501	0	0.199657	0.414205	0.574882	0.169033	0.283904	0.358595	0.477112	0.256463	0	0.0891359	0.345387	4.60645	2.40058	0	0	0.470184	0.254607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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