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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015160 ID=TCONS_00015160|Name=TCONS_00015160|organism=Clytia hemisphaerica|type=transcript|length=1508bp
ttaaagattttatgtTTTCTGGCAGATCATCATACCAACGAGCTTGACAT
TGAAATGTACCATCATTAACAACTTTGACCATTGGTTCTTTGAGTGTACA
GCGAAGCTTTTTACTAGGGTTAGAGAATTCGACATTTAGATAACTGGGAT
GATTTTTATCTCGACGTGACTTGTGAACAATTTTAGCGGTGTTAAATTCG
ATGTACTCTTTGACTGGtagccattttagttgaattaCGTCATTTAAAGT
AGCGAATCGAGAAAGCACGTACCCAGCTGCAATGTTTTGGATCTTTTGAA
GACGTTCTACTTGGTACTTTGGAATTTGCGCATATACAACATTGCTCTAG
TTAAGCTTGGATAATATCATCGTTTCAGCCAGAGTCTTGCGAACATGAAA
TGGAGTAAAGCGACTGAATTTTCGTAGTGCTCGTAATGTTCCTTGAGAGG
ATTTGATGATTTCGTTGATATGTGTTGACCATGTTAAGTTATGATCAAGA
TAGACACCAAGCAATTTAACGTAGGTTTTGTGCTCGATAGATCGGCCAGA
GCAGCGGAATAGTTGgctttgattttttggaaaattcctcAAGCGttgag
aatgaaaaatgatgagtTGTAGTTTGCCACTATTAAATAGTAGGTTACTG
TCTTTTGACCACGACTGAAGGTTATCAACATCCTTCTCCATATCCTTGAT
GGTTTCCTGCAAGTCCTTGAGTTTACAGTGACGGTAAAGGGTGGTATCGT
CAGCGTATTGAATACTGGATGATGTTACTTGACCTGAAAGCTCGACGACA
TAAAACTTGAATAACACAGGGCCTAATATACTTCCCTGTGGAACTCCAAA
ATACATAGGTTTTAATGAAGAGGTTTTATCCTCAACCTGTACATACTGTC
TCCTCTCCAATAAATAGCTCGATAGGATTTGTAGagaatcagaagaaaaa
ttcataTCTCGAAGTTTCAACAAGAGATTAAGATGGTCTATTGTGTCAAA
GACTTTGGAGTAATCAATTAGAATGGAAAGAGTTACTTCACTTTTGCTCA
TTGCTTTCTTGATGTCATCTCGAAGCTTGATCAGTAAGGTAGTTGTAGAA
TGTCCTTTACGAAACCCGGACTGCGTTTGACGATAGAGAGCTTTATCTTC
AATAAATTTACAGAGCTGATGCAAGATAACTCGTTCAAAGACTTTCGAGA
GCACAGGGAGTACCGATATTGGGTGATAGTCTTTGATTTTGATAGGTAGG
TCGATTTTCGGAATAGGGCATACGCGAGCAATTTTCCATTGTCGAGGGAA
GATTTTCTTGTCAATGCCGTTATTGATGATATTGACAAGTGGCGATGTGA
TGAATTCCGATATCGGTTTTACAAAACGAATAGAGATATTATCAGAGCCG
CAAGAACAGTCATTTTTCAGGCTCTTTAAGATCTGACATACTTCATCATA
AGTGACATGATGAATTTTAAACGCGTTTTCGTCATCTATCGTTTCGATGT
TATCTGGT Run BLAST on NCBI protein sequence of TCONS_00015160-protein >TCONS_00015160-protein ID=TCONS_00015160-protein|Name=TCONS_00015160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
PDNIETIDDENAFKIHHVTYDEVCQILKSLKNDCSCGSDNISIRFVKPIS
EFITSPLVNIINNGIDKKIFPRQWKIARVCPIPKIDLPIKIKDYHPISVL
PVLSKVFERVILHQLCKFIEDKALYRQTQSGFRKGHSTTTLLIKLRDDIK
KAMSKSEVTLSILIDYSKVFDTIDHLNLLLKLRDMNFSSDSLQILSSYLL
ERRQYVQVEDKTSSLKPMYFGVPQGSILGPVLFKFYVVELSGQVTSSSIQ
YADDTTLYRHCKLKDLQETIKDMEKDVDNLQSWSKDSNLLFNSGKLQLII
FHSQRLRNFPKNQSQLFRCSGRSIEHKTYVKLLGVYLDHNLTWSTHINEI
IKSSQGTLRALRKFSRFTPFHVRKTLAETMILSKLN Run BLAST on NCBI transcript from alignment at sc0000204:263863..265370 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015160 ID=TCONS_00015160|Name=TCONS_00015160|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at sc0000204:263863..265370 (Clytia hemisphaerica)
ACCAGATAACATCGAAACGATAGATGACGAAAACGCGTTTAAAATTCATC
ATGTCACTTATGATGAAGTATGTCAGATCTTAAAGAGCCTGAAAAATGAC
TGTTCTTGCGGCTCTGATAATATCTCTATTCGTTTTGTAAAACCGATATC
GGAATTCATCACATCGCCACTTGTCAATATCATCAATAACGGCATTGACA
AGAAAATCTTCCCTCGACAATGGAAAATTGCTCGCGTATGCCCTATTCCG
AAAATCGACCTACCTATCAAAATCAAAGACTATCACCCAATATCGGTACT
CCCTGTGCTCTCGAAAGTCTTTGAACGAGTTATCTTGCATCAGCTCTGTA
AATTTATTGAAGATAAAGCTCTCTATCGTCAAACGCAGTCCGGGTTTCGT
AAAGGACATTCTACAACTACCTTACTGATCAAGCTTCGAGATGACATCAA
GAAAGCAATGAGCAAAAGTGAAGTAACTCTTTCCATTCTAATTGATTACT
CCAAAGTCTTTGACACAATAGACCATCTTAATCTCTTGTTGAAACTTCGA
GAtatgaatttttcttctgattctCTACAAATCCTATCGAGCTATTTATT
GGAGAGGAGACAGTATGTACAGGTTGAGGATAAAACCTCTTCATTAAAAC
CTATGTATTTTGGAGTTCCACAGGGAAGTATATTAGGCCCTGTGTTATTC
AAGTTTTATGTCGTCGAGCTTTCAGGTCAAGTAACATCATCCAGTATTCA
ATACGCTGACGATACCACCCTTTACCGTCACTGTAAACTCAAGGACTTGC
AGGAAACCATCAAGGATATGGAGAAGGATGTTGATAACCTTCAGTCGTGG
TCAAAAGACAGTAACCTACTATTTAATAGTGGCAAACTACAactcatcat
ttttcattctcaaCGCTTgaggaattttccaaaaaatcaaagcCAACTAT
TCCGCTGCTCTGGCCGATCTATCGAGCACAAAACCTACGTTAAATTGCTT
GGTGTCTATCTTGATCATAACTTAACATGGTCAACACATATCAACGAAAT
CATCAAATCCTCTCAAGGAACATTACGAGCACTACGAAAATTCAGTCGCT
TTACTCCATTTCATGTTCGCAAGACTCTGGCTGAAACGATGATATTATCC
AAGCTTAACTAGAGCAATGTTGTATATGCGCAAATTCCAAAGTACCAAGT
AGAACGTCTTCAAAAGATCCAAAACATTGCAGCTGGGTACGTGCTTTCTC
GATTCGCTACTTTAAATGACGtaattcaactaaaatggctaCCAGTCAAA
GAGTACATCGAATTTAACACCGCTAAAATTGTTCACAAGTCACGTCGAGA
TAAAAATCATCCCAGTTATCTAAATGTCGAATTCTCTAACCCTAGTAAAA
AGCTTCGCTGTACACTCAAAGAACCAATGGTCAAAGTTGTTAATGATGGT
ACATTTCAATGTCAAGCTCGTTGGTATGATGATCTGCCAGAAAacataaa
atctttaa Coding sequence (CDS) from alignment at sc0000204:263863..265370 >TCONS_00015160 ID=TCONS_00015160|Name=TCONS_00015160|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at sc0000204:263863..265370 (Clytia hemisphaerica)
CCAGATAACATCGAAACGATAGATGACGAAAACGCGTTTAAAATTCATCA
TGTCACTTATGATGAAGTATGTCAGATCTTAAAGAGCCTGAAAAATGACT
GTTCTTGCGGCTCTGATAATATCTCTATTCGTTTTGTAAAACCGATATCG
GAATTCATCACATCGCCACTTGTCAATATCATCAATAACGGCATTGACAA
GAAAATCTTCCCTCGACAATGGAAAATTGCTCGCGTATGCCCTATTCCGA
AAATCGACCTACCTATCAAAATCAAAGACTATCACCCAATATCGGTACTC
CCTGTGCTCTCGAAAGTCTTTGAACGAGTTATCTTGCATCAGCTCTGTAA
ATTTATTGAAGATAAAGCTCTCTATCGTCAAACGCAGTCCGGGTTTCGTA
AAGGACATTCTACAACTACCTTACTGATCAAGCTTCGAGATGACATCAAG
AAAGCAATGAGCAAAAGTGAAGTAACTCTTTCCATTCTAATTGATTACTC
CAAAGTCTTTGACACAATAGACCATCTTAATCTCTTGTTGAAACTTCGAG
AtatgaatttttcttctgattctCTACAAATCCTATCGAGCTATTTATTG
GAGAGGAGACAGTATGTACAGGTTGAGGATAAAACCTCTTCATTAAAACC
TATGTATTTTGGAGTTCCACAGGGAAGTATATTAGGCCCTGTGTTATTCA
AGTTTTATGTCGTCGAGCTTTCAGGTCAAGTAACATCATCCAGTATTCAA
TACGCTGACGATACCACCCTTTACCGTCACTGTAAACTCAAGGACTTGCA
GGAAACCATCAAGGATATGGAGAAGGATGTTGATAACCTTCAGTCGTGGT
CAAAAGACAGTAACCTACTATTTAATAGTGGCAAACTACAactcatcatt
tttcattctcaaCGCTTgaggaattttccaaaaaatcaaagcCAACTATT
CCGCTGCTCTGGCCGATCTATCGAGCACAAAACCTACGTTAAATTGCTTG
GTGTCTATCTTGATCATAACTTAACATGGTCAACACATATCAACGAAATC
ATCAAATCCTCTCAAGGAACATTACGAGCACTACGAAAATTCAGTCGCTT
TACTCCATTTCATGTTCGCAAGACTCTGGCTGAAACGATGATATTATCCA
AGCTTAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015160-exon-sc0000204-1491911889:263863..265370 | TCONS_00015160-exon-sc0000204-1491911889:263863..265370 | Clytia hemisphaerica | exon |
| TCONS_00015160-exon-sc0000204-1510915933:263863..265370 | TCONS_00015160-exon-sc0000204-1510915933:263863..265370 | Clytia hemisphaerica | exon |
| TCONS_00015160-exon-sc0000204-1575043694:263863..265370 | TCONS_00015160-exon-sc0000204-1575043694:263863..265370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204 | supercontig | sc0000204:263863..265370 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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