TCONS_00015155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015155
Unique NameTCONS_00015155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015155 ID=TCONS_00015155|Name=TCONS_00015155|organism=Clytia hemisphaerica|type=transcript|length=832bp
AAATGGAAGTCCGTTTGAGACGGAGGGACTTTGAACACTGTAAACCATCC
TTCAATCTCGTGACGCAAAGAAGCAAAATTGTTATACTTCACTTTACTCA
TGAAAATCGTTAAAATTCACCAATAACCATATAACGGTATTTTTCAATGG
AAAACACGCACCACATCTCATTCAAATGTTCACTCTATCACAAATCAATT
TAAAACACTGTTTACACCCCATCACTACAGAATAATTTAGAATCACGTCA
CCACGCAAGAAATAATATCACGCCAACAGCAGAGAGCCTCATTTTGGCTA
GCCCAATTCACAGAAAATAACACACGACATAATATTTCTTCCACAACGTT
TATTAGCAATACTTTTTCTAATGTCAATTATCTTtcaattaagggctctg
gacatacccaatttttcgatttttcaccaacttaaatggcaatttctgca
ttttaaaaaggtTAATgtgtaactttttttatatgtcctgttaaacctac
ctttttagaattaaaaatcacttttatggATCTACCTGgcgggggttgga
aattgtacttctgaaaacccaaaaataaggtaaatacaGACTAAAattag
gctatttagagcaaaataaggggccttctctttgacagctaaatatattc
ttaaaaattaataaacgggaggtcctaataaggtccggggggttggaaaa
gttttaaaaaataaacaagcggggggggggcgtttgtttggaacctaaga
gtatgtgCAACAAGGGTTAGGGACCTCCAGGTAGTTCAAAAAAGGTTATA
AAGAATATTTGTTTGAATCGTgataaaataaa
Run BLAST on NCBI

transcript from alignment at sc0000204:203225..204056

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015155 ID=TCONS_00015155|Name=TCONS_00015155|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at sc0000204:203225..204056 (Clytia hemisphaerica)
tttattttatcACGATTCAAACAAATATTCTTTATAACCTTTTTTGAACT
ACCTGGAGGTCCCTAACCCTTGTTGcacatactcttaggttccaaacaaa
cgccccccccccgcttgtttattttttaaaacttttccaaccccccggac
cttattaggacctcccgtttattaatttttaagaatatatttagctgtca
aagagaaggccccttattttgctctaaatagcctaatTTTAGTCtgtatt
taccttatttttgggttttcagaagtacaatttccaacccccgcCAGGTA
GATccataaaagtgatttttaattctaaaaaggtaggtttaacaggacat
ataaaaaaagttacacATTAacctttttaaaatgcagaaattgccattta
agttggtgaaaaatcgaaaaattgggtatgtccagagcccttaattgaAA
GATAATTGACATTAGAAAAAGTATTGCTAATAAACGTTGTGGAAGAAATA
TTATGTCGTGTGTTATTTTCTGTGAATTGGGCTAGCCAAAATGAGGCTCT
CTGCTGTTGGCGTGATATTATTTCTTGCGTGGTGACGTGATTCTAAATTA
TTCTGTAGTGATGGGGTGTAAACAGTGTTTTAAATTGATTTGTGATAGAG
TGAACATTTGAATGAGATGTGGTGCGTGTTTTCCATTGAAAAATACCGTT
ATATGGTTATTGGTGAATTTTAACGATTTTCATGAGTAAAGTGAAGTATA
ACAATTTTGCTTCTTTGCGTCACGAGATTGAAGGATGGTTTACAGTGTTC
AAAGTCCCTCCGTCTCAAACGGACTTCCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008483XLOC_008483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015155-exon-sc0000204-1491911889:203225..204056TCONS_00015155-exon-sc0000204-1491911889:203225..204056Clytia hemisphaericaexon
TCONS_00015155-exon-sc0000204-1510915933:203225..204056TCONS_00015155-exon-sc0000204-1510915933:203225..204056Clytia hemisphaericaexon
TCONS_00015155-exon-sc0000204-1575043694:203225..204056TCONS_00015155-exon-sc0000204-1575043694:203225..204056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:203225..204056 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359183	0.250239	0.643843	0.390278	0.734011	0.415613	0.313542	0.241154	0.10515	0.402837	0.483594	0.196301	0.354534	0.118916	0.100869	0.145739	0	0.132864	0	0.191489	0.512113	0.302622	0.0713324	0.124049	0.249908	0.712508	0.339093	0.451647	0.270533	0.315789
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top