TCONS_00015143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015143
Unique NameTCONS_00015143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015143 ID=TCONS_00015143|Name=TCONS_00015143|organism=Clytia hemisphaerica|type=transcript|length=525bp
GATGAGAATCGTAACGATGTAAAGGGTTtgcttttgtaatttcttcaTTG
TGTTGATTTTTAAAACACGCTGTGTGGATAATACAGATAATGAGACTTGG
TTGGTAAAATGTATGGTTATGGCGCATTTACCAGAATATTATTGAATGAG
ATTCCCAGAGGCTTGCCCAAACACAATCAAATGTTTTCAACTCCTCCAAT
GTTTCCAGGCTTTTCACAATGATTAGTATTTTGGGAAGTTGTTTAACCGG
AAACAACAGTTTTAAGAAGATGGTCCTTCTTTTACAACAAAGTTGGCACT
GCTGACGATTCCAGAAAAGTTTGTCTTTTTGACCCAACTTTCATATATTT
TAGAAACTTACTTTAATTTTACATTTACATACACACAATACTTGTAATCG
GACTATCCCAAAATAGCTTTTTCCTCAAGTTTTTTATCTGTATCAGGTAT
AAAAATTTATACTGCAGGGATTTTATGGCTTAGACTTTATGGCTTAGACT
TTCTCTTTTCAATCATTTATTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000204:314604..315243-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015143 ID=TCONS_00015143|Name=TCONS_00015143|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0000204:314604..315243- (Clytia hemisphaerica)
GATGAGAATCGTAACGATGTAAAGGGTTTGCTTTTGTAATTTCTTCATTG
TGTTGATTTTTAAAACACGCTGTGTGGATAATACAGATAATGAGACTTGG
TTGGTAAAATGTATGGTTATGGCGCATTTACCAGAATATTATTGAATGAG
ATTCCCAGAGGCTTGCCCAAACACAATCAAATGTTTTCAACTCCTCCAAT
GTTTCCAGGCTTTTCACAATGATTAGTATTTTGGGAAGTTGTTTAACCGG
AAACAACAGTTTTAAGAAGATGGTCCTTCTTTTACAACAAAGTTGGCACT
GCTGACGATTCCAGAAAAGTTTGTCTTTTTGACCCAACTTTCATATATTT
TAGAAACTTACTTTAATTTTACATTTACATACACACAATACATACACACT
TAAAAAATACATTGATTTATTTGTCATATAGAATATAGAATTGGACTTGC
NTACATTGACATTTAAATACATTGATTTATTTGTCATATAGAATATAGAA
TTGGACTTGTAATCGGACTATCCCAAAATAGCTTTTTCCTCAAGTTTTTT
ATCTGTATCAGGTATAAAAATTTATACTGCAGGGATTTTATGGCTTAGAC
TTTATGGCTTAGACTTTCTCTTTTCAATCATTTATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008477XLOC_008477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015143-exon-sc0000204-1575043694:314853..315243TCONS_00015143-exon-sc0000204-1575043694:314853..315243Clytia hemisphaericaexon
TCONS_00015143-exon-sc0000204-1575043694:314604..314737TCONS_00015143-exon-sc0000204-1575043694:314604..314737Clytia hemisphaericaexon
TCONS_00015143-exon-sc0000204-1510915933:314853..315243TCONS_00015143-exon-sc0000204-1510915933:314853..315243Clytia hemisphaericaexon
TCONS_00015143-exon-sc0000204-1510915933:314604..314737TCONS_00015143-exon-sc0000204-1510915933:314604..314737Clytia hemisphaericaexon
TCONS_00015143-exon-sc0000204-1491911889:314853..315243TCONS_00015143-exon-sc0000204-1491911889:314853..315243Clytia hemisphaericaexon
TCONS_00015143-exon-sc0000204-1491911889:314604..314737TCONS_00015143-exon-sc0000204-1491911889:314604..314737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:314604..315243 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.81686	7.81005	4.00619	3.65829	0	0.13146	0.385339	0.16595	1.24196	0.87258	2.34742	1.4204	1.04795	0.407364	1.99491	0.842408	2.73778	1.51734	1.72242	1.46454	3.27843	2.46661	4.57568	4.91257	0	0	1.73961	2.27242	3.03417	2.15797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top