TCONS_00015134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015134
Unique NameTCONS_00015134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015134 ID=TCONS_00015134|Name=TCONS_00015134|organism=Clytia hemisphaerica|type=transcript|length=1664bp
TTTGCATCcccgaaaagaaaatttttgttaggTTGCGTCATTTagacacg
tttttttctttcgCGCTCAAAATCTCCCGccttttaggaaaatggtagCG
CTTCAACGAATTAGATGATTAGACAATTTGCCTCCAGCCAATTGGAAATC
AGAGTTGCAAAAATTGCGCGTAAACATAAATTATTTAAAAGCTCAACCAA
CATCATTCATTTCATTCAACCTCTTCATCAGCAAGCAAACACAGGCAAGC
CCAGCAACTTTGAAATTCGTTTCGTTTTACTGAAATTCTCTTCATAAAAT
GGCTCTCGTCGACAGAACTAACGTGCTCAAGAACAAGGAAAACATCATGG
TACCAAACTCCAACCAAATTGGACTTGATTTGGAGAAAAAGATGCAAAAA
CCAATGaaacCAGCAAAGATTGACAAAGATGCACAAGAAGAACCTTTGTT
GCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAATATCCTGATA
TCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACTGCTGAAGAA
GTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACTGAAACCTCA
AGAGCGATACTTTATTTCACATGTATTAGCATTCTTTGCTGCAAGTGATG
GTATTGTTAATGAAAACCTGGTTGAATGTTTCAGCCAAGAAGTCCAAATT
CCAGAAGCCCGTGCATTTTATGGTTTCCAAATTGCAATCGAAAACATCCA
CTCAGAAATGTACTCTTTATTGATTGAGACTTTGATTGAAGATCCAACTG
AACGTGGAAATCTCTTTAATGCCATTGAAACCATGCCTTGCATTCAAAAG
AAAGCTGTCTGGGCTTTGAAATGGATCAATAAAGAGCGAGCATCCTATGC
TGAACGTATCATTGCATTTGCTGCAGTTGAGGGAATCTTCTTCTCTGGTT
CCTTTGCATCTATCTTTTGGTTGAAAAGCAGggGAGTCATGCCTGGACTT
ACCTTTTCAAATGAGTTAATCAGTCGTGATGAAGGATTACACTGTGACTT
TGCTTGTCTAATGTTCAAACATTTGGTCAACAAACCTTCAGAAGAGAAAG
TCAAAGAAATCATTTTAGATGCTGTCAGAATTGAACAGGAATTCTTGACC
GAATCATTACCATGTGACTTGCTTGGAATGAACAAAGGATTAATGAAAAC
ATACATTGAATTTGTTGCAGACAGATTGCTTCTTGCTCTTGGATGTTCAA
AGaTTTGGCATCGTGAAAATCCTTTCGATTTTATGGAGAACATTTCTTTG
GGACGTAAAGCCAACTTCTTCGAAAGTCGTGTATCTGACTACCAAAAGTC
TGGTGTCATGGAATCACTAAACGATACAGGAAAAGACCTTCAGTTCGACG
AACTAGATGATTTGGATTTCTAAATAGTTTTACAattggattttattttt
tgctttttttaattgtaatgtatattttatttaattttactCAGGTCTTA
TATTTTATATCCTTTATCAGATGTACATAGATTGAATAACAGAAATAGAC
ATTTTACActgttcattttaatttcacgtCTCAAAATCACTAACCTACAA
AGAGATTCTATAATACCTTTGACCTGTCGAGAATTAGCTTGATTAGAACA
ACATTTATATCACC
Run BLAST on NCBI

transcript from alignment at sc0000204:150750..153988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015134 ID=TCONS_00015134|Name=TCONS_00015134|organism=Clytia hemisphaerica|type=transcript|length=3239bp|location=Sequence derived from alignment at sc0000204:150750..153988- (Clytia hemisphaerica)
TTTGCATCCCCGAAAAGAAAATTTTTGTTAGGTTGCGTCATTTAGACACG
TTTTTTTCTTTCGCGCTCAAAATCTCCCGCCTTTTAGGAAAATGGTAGCG
CTTCAACGAATTAGATGATTAGACAATTTGCCTCCAGCCAATTGGAAATC
AGAGTTGCAAAAATTGCGCGTAAACATAAATTATTTAAAAGCTCAACCAA
CATCATTCATTTCATTCAACCTCTTCATCAGCAAGCAAACACAGGCAAGC
CCAGCAACTTTGAAATTCGTTTCGTTTTACTGAAATTCTCTTCATAAAAT
GGCTCTCGTCGACAGAACTAACGTGCTCAAGAACAAGGAAAACATCATGG
TACCAAACTCCAACCAAATTGGACTTGATTTGGAGAAAAAGATGCAAAAA
CCAATGGTCAGCGATGTTGCCTCTATCATCGCAGCAGTAAGTTGTCTATT
AAATCCCTTTTCCACACACTACAATGCCAGAAATGTGTAGACCATATAAA
CAGCTTGGGTTACTTCACTTAAAATCAATTGTCAGAGCTATTTTATCAGG
GCAAGACAAAAAAGGTGGCACTTCCGTTCGGTTTGGGAACGCAATCTCTA
AACTTTTCAGCCTAACCAAAATGTTTTATTTTTCACTTTTCTTCTAAACT
GAAAAAATTACTGAAATTTGAGGGGGTTTTGATTGACATAGCTTAAAGGG
TCCCCTCGCTTGTTTGTGATCTTTAAGAAATCAATCTATATTGGTCGAAA
AACCCCTAACAACATATTCAAAGAACATAAAACTTACTGCTAGTTCCTGT
AGAGATATCGCGCATTTGTCTCAACTACTTGTGTTACAAGAGCGCGAGAA
AATTCAAAGGACTTCAGAAGCCAGGTTGAGTGAACATCAAAATTTATAAT
TTGTAATTATGGTGCAAAGAAAGAGTTTTGCATGCTAATACTTTGGGCAG
TTGCTTTTCATATGATCATGAAGTGAGTGCCTTGTTATCATATTTAAGCG
AGGGGTCCCTTTAAGAAAAGCATATAAAACGAACTTCCCCTGCCTGAGGA
AAACCTAGGCAAAGACAGATTTGTTTTATACCCCTAGAGACCAAAAGTTG
GAGAGCATCAAAATGATGCGCGCAAATCTTTATTGCCAATTTACAGGAAA
GGTGTATTAGAAGAGGGATGCCAACATTACTAGATAGACCAACTTACGGT
ACTTGCTGAAAGTCCCGAAAGTTTCAGGCTTAAAAAGATTAATGTCCAAT
CTATTTCTTTTTCAGAAACCAGCAAAGATTGACAAAGATGCACAAGAAGA
ACCTTTGTTGCGAGAAAATCCACGTAGATTTGTCTTGTTCCCAATCAAAT
ATCCTGATATCTGGGAAATGTACAAAAAGGCAGAGGCATCATTCTGGACT
GCTGAAGAAGTGGATTTGGCTGTTGATGTGAAACATTGGCAAGAGAAACT
GAAACCTCAAGAGCGATACTTTATTTCACATGTATTAGCATTCTTTGCTG
CAAGTGATGGTATTGTTAATGAAAACCTGGTAAGCAAACCTCTTGCGCCT
ACAAGGGAGAATAGGCAATTGCTTTACTCTAGACCATTCTTCATATATTT
TTAATGTTTAATCATCACAAGACCGCCTTTTATCATTCATGAAAATCAAT
GGGGTCTAAATCTTGTTTCTTTAGAAATACATCAGTAAAATACTTAACAT
ATCGCCAATGTTCAAAAACTGCATTTCAGACCTTAACAATAAGAGGTCAT
CGTGACTAAAGACATGTAGCTTCTGGCTGTTCCTTTGCCCATTAAATTAT
TGGCCCATGGATATTTCTATGAACTATTTTTTCTCTAATCTCTTTTACAG
GTTGAATGTTTCAGCCAAGAAGTCCAAATTCCAGAAGCCCGTGCATTTTA
TGGTTTCCAAATTGCAATCGAAAACATCCACTCAGAAATGTACTCTTTAT
TGATTGAGACTTTGATTGAAGATCCAACTGAACGTGGAAATCTCTTTAAT
GCCATTGAAACCATGCCTTGCATTCAAAAGAAAGCTGTCTGGGCTTTGAA
ATGGATCAATAAAGAGCGAGCATCCTATGCTGAACGTATCATTGCATTTG
CTGCAGTTGAGGGAATCTTCTTCTCTGGTTCCTTTGCATCTATCTTTTGG
TTGAAAAGCAGGTGAGTTAAATCCTACTTTGGTTCCTTGATATACTTCAC
TCTTAACTGTTTAACTGTCAACCTTGTGACTGAACTCAAATATTTAAATT
TATTTTTCAGGGGAGTCATGCCTGGACTTACCTTTTCAAATGAGTTAATC
AGTCGTGATGAAGGATTACACTGTGACTTTGCTTGTCTAATGTTCAAACA
TTTGGTCAACAAACCTTCAGAAGAGAAAGTCAAAGAAATCATTTTAGATG
CTGTCAGAATTGAACAGGAATTCTTGACCGAATCATTACCATGTGACTTG
CTTGGAATGAACAAAGGATTAATGAAAACATACATTGAATTTGTTGCAGA
CAGATTGCTTCTTGCTCTTGGATGTTCAAAGGTAAGGAATATTTGAAAAA
AACATGATTGATCTAATACTGTTTAGCAATTGGGCTGCATCCCCTTCCTT
AGATTTAACTCAAATTCAATCACTAGCTTTACCTGACATTAGAGTACTAC
ACTGTACTATACACACACCATACTATAGAACCCAGAACTTTTTAGCTCAA
ATAAATCTAAATTAGAAATGTTGACATCTACACCTTTGTTCCTACTTTGA
AATTTATCCTGTGTATCAAACCAATCCCTTATCCTGGGCAAAGTACTAAA
AAAGTTTTCTTTTTTAATTTTATATAGATTTGGCATCGTGAAAATCCTTT
CGATTTTATGGAGAACATTTCTTTGGGACGTAAAGCCAACTTCTTCGAAA
GTCGTGTATCTGACTACCAAAAGTCTGGTGTCATGGAATCACTAAACGAT
ACAGGAAAAGACCTTCAGTTCGACGAACTAGATGATTTGGATTTCTAAAT
AGTTTTACAATTGGATTTTATTTTTTGCTTTTTTTAATTGTAATGTATAT
TTTATTTAATTTTACTCAGGTCTTATATTTTATATCCTTTATCAGATGTA
CATAGATTGAATAACAGAAATAGACATTTTACACTGTTCATTTTAATTTC
ACGTCTCAAAATCACTAACCTACAAAGAGATTCTATAATACCTTTGACCT
GTCGAGAATTAGCTTGATTAGAACAACATTTATATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008473XLOC_008473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015134-exon-sc0000204-1575043694:153583..153988TCONS_00015134-exon-sc0000204-1575043694:153583..153988Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1575043694:152460..152723TCONS_00015134-exon-sc0000204-1575043694:152460..152723Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1575043694:151828..152138TCONS_00015134-exon-sc0000204-1575043694:151828..152138Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1575043694:151458..151728TCONS_00015134-exon-sc0000204-1575043694:151458..151728Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1575043694:150750..151161TCONS_00015134-exon-sc0000204-1575043694:150750..151161Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1510915933:153583..153988TCONS_00015134-exon-sc0000204-1510915933:153583..153988Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1510915933:152460..152723TCONS_00015134-exon-sc0000204-1510915933:152460..152723Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1510915933:151828..152138TCONS_00015134-exon-sc0000204-1510915933:151828..152138Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1510915933:151458..151728TCONS_00015134-exon-sc0000204-1510915933:151458..151728Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1510915933:150750..151161TCONS_00015134-exon-sc0000204-1510915933:150750..151161Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1491911889:153583..153988TCONS_00015134-exon-sc0000204-1491911889:153583..153988Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1491911889:152460..152723TCONS_00015134-exon-sc0000204-1491911889:152460..152723Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1491911889:151828..152138TCONS_00015134-exon-sc0000204-1491911889:151828..152138Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1491911889:151458..151728TCONS_00015134-exon-sc0000204-1491911889:151458..151728Clytia hemisphaericaexon
TCONS_00015134-exon-sc0000204-1491911889:150750..151161TCONS_00015134-exon-sc0000204-1491911889:150750..151161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:150750..153988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.853655	0.264938	0	0.886471	18.8304	12.3147	4.89255	3.75504	1.59347	1.91853	0.675938	2.34401	0.882148	0.329228	0.276388	0.564473	2.19026	2.63196	0	0.271123	0.288379	0.422959	0.667818	1.27743	1.1381	1.97978	0.831456	0.413006	0.329189	1.0303
Blast
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BLAST of TCONS_00015134 vs. Swiss-Prot (Human)
Match: RIR2 (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 490.73 bits (1262), Expect = 1.093e-169
Identity = 256/363 (70.52%), Postives = 295/363 (81.27%), Query Frame = 2 
Query:  284 NSLHKMALVDRTNVLKNKENIMVPNSNQIGLDLEKKMQKPMKPAK--IDKDAQEEPLLRENPRRFVLFPIKYPDIWEMYKKAEASFWTAEEVDLAVDVKHWQEKLKPQERYFISHVLAFFAASDGIVNENLVECFSQEVQIPEARAFYGFQIAIENIHSEMYSLLIETLIEDPTERGNLFNAIETMPCIQKKAVWALKWINKERASYAERIIAFAAVEXXXXXXXXXXXXWLKSRGVMPGLTFSNELISRDEGLHCDFACLMFKHLVNKPSEEKVKEIILDAVRIEQEFLTESLPCDLLGMNKGLMKTYIEFVADRLLLALGCSKIWHRENPFDFMENISLGRKANFFESRVSDYQKSGVMES 1366
            + L  ++LVD+ N         V  S        +  Q+P +P         ++EPLLRENPRRFV+FPI+Y DIW+MYKKAEASFWTAEEVDL+ D++HW E LKP+ERYFISHVLAFFAASDGIVNENLVE FSQEVQI EAR FYGFQIA+ENIHSEMYSLLI+T I+DP ER  LFNAIETMPC++KKA WAL+WI  + A+Y ER++AFAAVEGIFFSGSFASIFWLK RG+MPGLTFSNELISRDEGLHCDFACLMFKHLV+KPSEE+V+EII++AVRIEQEFLTE+LP  L+GMN  LMK YIEFVADRL+L LG SK++  ENPFDFMENISL  K NFFE RV +YQ+ GVM S
Sbjct:   20 SPLKGLSLVDKENTPPALSGTRVLASKTA----RRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHW-ESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSS 377
The following BLAST results are available for this feature:
BLAST of TCONS_00015134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIR21.093e-16970.52Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
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