TCONS_00015125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015125
Unique NameTCONS_00015125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015125 ID=TCONS_00015125|Name=TCONS_00015125|organism=Clytia hemisphaerica|type=transcript|length=1806bp
TTagatgataaaaatgaaataacagTACATCaagtaaaatgaaattttca
atatttctatGGGTGTGCACATGTTGTGTTGTGGTGGCCCATGAGAAAGG
TCCCCTTCCTGTGCCTACCTATTTTCATCGCCGGCATGAAAATGGATCAA
TCGTAAATGCCAAAGATCCAAGAACTAGAAACTGGATGGATGGTCCCTTC
GATAACAGAATCTCTCAAGAAAATATCGATGCTAAATTGAAAGTATGGCC
TGAGGAAGTTGAAAATGCAGGACAAGTGACTGTATTGTGGGAAGGTATTC
CCAATCCAACCAAAGATGATCGCATTGGATATTATTGTCCATTTTACGAC
AATCCTAAACACGCACTGGATACTATTGATGTCACAAAATCACCGACCTG
GCATGAAGGATATGGTTATTACACAGTCAATTTGTTCAACATGAGAGCTG
CTTGTGTCTTTCGATACTACAACAGTGCTAAAGCTCTTGTAGCTGTCAGT
AACAAAGTGAAATTCACCAATGGAGATATCTATTCTCCGCTTCACGTTCA
TTTATCCATGACCAACAAACCTACGGAGATGAGAGTGATGTGGAACTCCG
CAAAAATCGACAGGGGTATCTTATGTCGGTATGGCAAGTCCAAAGTGTTC
AATATGACTCAAACAACCTTCGAATCACATACATACAAAGCCTCAGACAT
GTGTGAATCACCTGCGAATAACAATGCTACCTGGTACTGGGATCCTGGAT
ATATTTATGATGTTTTGCTGACCGAATTGGAACCCAACACAAGATACTAT
TACTCGTGTGGTACAGAAGAGTACATGACTCCAACATACAACTTCACGAC
ACCAATAACACCAGGAGATAAAACTCCTTTCAACTTCATTGTGTATGGTG
ATATGGGTCTTGAAGCATTCCCTGAAGGAATTGAAACTGCCAAGTTAGTT
CGCCAAGAAATCGATTCGCACGATGTTCGATTCGTTTATCACCATGGAGA
TCTCTCATACGCCACCGGTTTGGCCTACATCTGGGAGCAATGGTTTCATT
TGATCCAGCCTTACGCCTCCCTCATCCCTTACATGGTTGGCATAGGAAAC
CACGAATACGACCATGTCAGTGGACATGCCAAAGACCCTTCAAAGCAACC
CAACTTTCGCCCTTCATGGTTCAATGGAGGAACAGATTCTGGAGGTGAAT
GTGGAGTACCAATGTTTCATCGCTGGCATATGCCAGACAATGGTCTTGCT
ATTTATTGGTACAGTTATGATTATGGCATGGTTCACATGGTGATGTTAAG
TACAGAACACGATTACCGCCCAGGATCACCTCAATATATTTGGTTGGAGA
ATGATCTGAAGAGTGTAGATCGAACGAAAACACCTTTCATTATGGTTGGA
GGGCATAGACCGATGTATTGTAGCGAAGCTTACCCAGTGAATTATGGTAT
TGCCTTGCACATGCAACAATATTTCGAAGACATGTTTTATAAATACAAAG
TGACCGTTGGTTTATGGGCTCACTATCATGCTTATGAGCGAACGTGCAAG
GTCTACCGCAACGAATGCAGGGATGATGGTATCCTACATCTGCTCATCGG
GTCTGGTGGCAGAAGCTTGGATCGAGACGAATGGTACAAAAAAGAATGGT
CAGTTTTCCACAAGACAGATTACGGTTATGGAAGATTCTCAGTCAAGAAT
TCAACGCACATCTTTTTCGAATTTGTTGAGAATAGCAGTCAAACGGTGCT
CGATTCTGTTTGGATCACCGCTGATTGATTAATTGAATGCAGGGATAAGA
TACAGG
Run BLAST on NCBI

transcript from alignment at sc0000204:28627..33103-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015125 ID=TCONS_00015125|Name=TCONS_00015125|organism=Clytia hemisphaerica|type=transcript|length=4477bp|location=Sequence derived from alignment at sc0000204:28627..33103- (Clytia hemisphaerica)
TTAGATGATAAAAATGAAATAACAGTACATCAAGTAAAATGAAATTTTCA
ATATTTCTATGGGTGTGCACATGTTGTGTTGTGGTGGCCCATGAGAAAGG
TCCCCTTCCTGTGCCTACCTATTTTCAGTAAGTTGTATTGATATTAGACT
TTTATTAAGATATCAGATGTGTCATAAATGATTTTTTTTTTCATTTTAGC
ATATCTTTTGATTTAATGGACCAAATTTTAATAAATAATCCATCAAAGTT
TAAGTCTATTTTTCTATTTCAAATATAATCGGATTAAATTTTTTTTTAAT
TCCTACAACTCGAGAAAATCTATTTCAGAGAGGATAACTTATTTCTGGAA
CACCTGGTACCCAGTAATGAATTCCAAAGTGTGTCCACATTTATCAAGTA
ATTATTCTATTTTCAGTCGCCGGCATGAAAATGGATCAATCGTAAATGCC
AAAGATCCAAGAACTAGAAACTGGATGGATGGTCCCTTCGATAACAGAAT
CTCTCAAGAAAATATCGATGCTAAATTGAAAGTATGGCCTGAGGAAGTTG
AAAATGCAGGACAAGTGACTGTATTGTGGGAAGGTATTCCCAATCCAACC
AAAGATGATCGCATTGGATATTATTGTCCATTTTACGACAATCCTAAACA
CGCACTGGATACTATTGATGTCACAAAATCACCGACCTGGCATGAAGGAT
ATGGTTATTACACAGTCAATTTGTTCAACATGAGAGCTGCTTGTGTCTTT
CGATACTACAACAGTGCTAAAGCTCTTGTAGCTGTCAGTAACAAAGTGAA
ATTCACCAATGGAGATATCTATTCTCCGCTTCACGTTCATTTATCCATGA
CCAACAAACCTACGGAGATGAGAGTGATGTGGAACTCCGCAAAAAGTAAG
TCAACTGGTCGGCTGCTGGCATCCACTAACGGATTCGTGCTTCTTATAAA
CCTATATTACTCTGTACCAGAGTGTATCTCACGTTTACCGCTTCGTAGTA
CACTCTGTGCGCATTGTCTGTTTGATAAAAAAAAATTCCCGTACGGAGAC
CTCTGCGATGAAGTATGATTTATAAATAGCAACACTTCTCTCATCGTCTC
CCCTCTCTTACCCACACTCTATCGTAGCAGTCTGTTTGAAAAATCTCAAA
TGAGAAAAGACAATGACAACAGACCCTCTATACTACGGCAACGAATTTTG
AAATTAGCCGTAGATATCGGATCTGTGTACAGAAAATACCTATATTGGTA
AAGGTCTACGATTCAGACTAGTGAACTGGTTTAATATTAAATGCCTTGAA
GGGATAATTCTTAGTATGCGAAAGTAGTATTTTTTATAACGAAAGCATCC
AAAAATAGCAGATTTTGACCATTGTGTCTCTAGTTTTAGTAAGACGTTTT
CGTTAGAAAAATGACTTGCACANGGCAGGTTTTGACCATTGGGTCTCTAG
TTTTAGTAAGACAGTTGTCGAATCCCAACTTTTTTCGGGTGTTTTCGTTA
GAAAAATGACTTGCACATATCAAGACTTTGAAGTTTGACTTACAGATAAC
TTCTCTAAGCATGAGAGAACCCTCTGAACTTTAGGAAGGTATCTAGACAC
AAACATTGAAAATGTATGTTCTTTCCTCCACACTTATTGTGGGTATGTTT
TTACAAAGATAGCCTTGTTTTACTCGGCATTCCTTTTAATCATTCTTTTG
ATTTCACTTTTCAGTCGACAGGGGTATCTTATGTCGGTATGGCAAGTCCA
AAGTGTTCAATATGACTCAAACAACCTTCGAATCACATACATACAAAGCC
TCAGACATGTGTGAATCACCTGCGAATAACAATGCTACCTGGTACTGGGA
TCCTGGATATATTTATGATGTTTTGCTGACCGAATTGGAACCCAACACAA
GATACTATTACTCGTGTGGTACAGAAGAGGTAAAATTCTGTTCAAAAATG
TTTCATGATATTCATGACCTAATGTTTTACACGGAAGCACCCAAAACACC
GGGGTGTTTTGCCACTAATTTTTAAATAAAACATTACGTCATGAATATCA
TTTCGACTAATTATTCAAGAATTTAGTTTTATCACTTTGGCAGGAAAAAT
TGTTAATATATATTCCTGTATTTATTTTGCTGTTGACCAATCTCTGAAGT
GTAATAAAAACTCATTTTGTGGCTAAAAACACTTTGGTTTAAGGGCATCG
TTTAACGTATCACATACAATTTGCTTACACAGCATTTTTGAACAAAAGAA
AAAACAATTAGCTCCCCTTCCCTTACCACGCGATTATAAATTTTAAGAAA
TTGATTGTTTATTCTGCTTTGTCAACATAGAGGTGCGTCTTTTTCTCTAA
ATCATAAAAAGTATCTTTAACTCTTATTTTCCTCCCATAGTACATGACTC
CAACATACAACTTCACGACACCAATAACACCAGGAGATAAAACTCCTTTC
AACTTCATTGTGTATGGTGATATGGGTCTTGAAGCATTCCCTGAAGGAAT
TGAAACTGCCAAGTTAGTTCGCCAAGAAATCGATTCGCACGATGTTCGAT
TCGTTTATCACCATGGAGATCTCTCATACGCCACCGGTTTGGTTTGTAGC
AAATTTTTTCTTGTGTTCCACCTGGTTAATGTCCAGGGTGTCAGATTCAC
TTCAAAAAGATGCTTTGCAAATGTACCAATTTTATTGAAAATGAATAAAT
ACCAACTGACTTATTATTGACTTTACGGCAACATTGTTATCAGTAACTTA
GTTTATACAATTTTCCTATCATTTATGTTTCAGGCCTACATCTGGGAGCA
ATGGTTTCATTTGATCCAGCCTTACGCCTCCCTCATCCCTTACATGGTTG
GCATAGGAAACCACGAATACGACCATGTCAGTGGACATGCCAAAGACCCT
TCAAAGCAACCCAACTTTCGCCCTTCATGGTTCAATGGAGGAACAGATTC
TGGAGGTGAATGTGGAGTACCAATGTTTCATCGCTGGCATATGCCAGACA
ATGGTCTTGCTATTTATTGGTATTTGTTCCCTATTTGCAAATTTTAAAAA
TAATTACAGTACTTTTTCGGCCCTTTTTACGTTGGCCCTTATTTGCGTTT
TTTTTCTTCGTCGCTGGCGAGATAAGAGCGGGTGTAAGGGAAGGGATTTA
AATTAGGGCTGGGCTAAAATGGAAAAAAATTGCTAGCTTTGGCGTAATTT
TAAGGCCGGCGCTTGATTAGGGCGTGTAAAAGGGTCATTAAGATTAAGGT
ACTTGACTTTATTCTATCAGAACTTTGGTTAGTTTTAGGTTCAGGTTAGT
TTTCAACATGATCGAGTAAAGAGGAAGGTAGTGTAGACAAATATTCAAGT
CTATTAAACAATAAGTGCGCACTCTTTTGTGTTTTCATGCAGAAATTAAT
TCAATGTAATTATGGTAATATTTTTAAACGTAGTCTCCACATAGTAGCAA
CAGTTATTCTGAACAAATTTTTTGACGGTGAGCTCAAATTTGTTCGAATT
ATGGAATTTCCGAGTTATGGAGGCCGGGTTATAATAAGGAATTGTTTAGT
AAAGGAACAAGAAAACTCGTCCAAATTTAGGATACATTCGAGTAAAGGAG
GTTCGAGTTCTTGAGATTCAACTGTTGTTTGGTCTTGTATCTAATTTCAA
TCAACGAACAATCTAGCAAAATTTGTTTCCCACTTGCAGGTACAGTTATG
ATTATGGCATGGTTCACATGGTGATGTTAAGTACAGAACACGATTACCGC
CCAGGATCACCTCAATATATTTGGTTGGAGAATGATCTGAAGAGTGTAGA
TCGAACGAAAACACCTTTCATTATGGTTGGAGGGCATAGACCGATGTATT
GTAGCGAAGCTTACCCAGGTATAACAAACCAGAGTTTGCAAGTTATTAAA
AATTCACTCCTTATAATATTGTTTGGTTAGTGTGAATCACTAGTCCATGT
TCACTAGGTAGCCTCGGTTAGGGTTTTTGTGGTATAGTTTTAATGGTGTT
TAAGCATGTTATTACCCATTTTGATTCTCTGTTTCAAAGTGTAACTCATT
TTCCCTGGAATCTCTAACTTATTTGTAAGCATCAATATTGGTTTTCTTCT
TATTCCAGTGAATTATGGTATTGCCTTGCACATGCAACAATATTTCGAAG
ACATGTTTTATAAATACAAAGTGACCGTTGGTTTATGGGCTCACTATCAT
GCTTATGAGCGAACGTGCAAGGTCTACCGCAACGAATGCAGGGATGATGG
TATCCTACATCTGCTCATCGGGTCTGGTGGCAGAAGCTTGGATCGAGACG
AATGGTACAAAAAAGAATGGTCAGTTTTCCACAAGACAGATTACGGTTAT
GGAAGATTCTCAGTCAAGAATTCAACGCACATCTTTTTCGAATTTGTTGA
GAATAGCAGTCAAACGGTGCTCGATTCTGTTTGGATCACCGCTGATTGAT
TAATTGAATGCAGGGATAAGATACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008471XLOC_008471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015125-exon-sc0000204-1575043694:32977..33103TCONS_00015125-exon-sc0000204-1575043694:32977..33103Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:32209..32687TCONS_00015125-exon-sc0000204-1575043694:32209..32687Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:31175..31389TCONS_00015125-exon-sc0000204-1575043694:31175..31389Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:30513..30713TCONS_00015125-exon-sc0000204-1575043694:30513..30713Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:30085..30320TCONS_00015125-exon-sc0000204-1575043694:30085..30320Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:29236..29414TCONS_00015125-exon-sc0000204-1575043694:29236..29414Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1575043694:28627..28995TCONS_00015125-exon-sc0000204-1575043694:28627..28995Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:32977..33103TCONS_00015125-exon-sc0000204-1510915933:32977..33103Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:32209..32687TCONS_00015125-exon-sc0000204-1510915933:32209..32687Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:31175..31389TCONS_00015125-exon-sc0000204-1510915933:31175..31389Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:30513..30713TCONS_00015125-exon-sc0000204-1510915933:30513..30713Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:30085..30320TCONS_00015125-exon-sc0000204-1510915933:30085..30320Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:29236..29414TCONS_00015125-exon-sc0000204-1510915933:29236..29414Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1510915933:28627..28995TCONS_00015125-exon-sc0000204-1510915933:28627..28995Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:32977..33103TCONS_00015125-exon-sc0000204-1491911889:32977..33103Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:32209..32687TCONS_00015125-exon-sc0000204-1491911889:32209..32687Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:31175..31389TCONS_00015125-exon-sc0000204-1491911889:31175..31389Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:30513..30713TCONS_00015125-exon-sc0000204-1491911889:30513..30713Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:30085..30320TCONS_00015125-exon-sc0000204-1491911889:30085..30320Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:29236..29414TCONS_00015125-exon-sc0000204-1491911889:29236..29414Clytia hemisphaericaexon
TCONS_00015125-exon-sc0000204-1491911889:28627..28995TCONS_00015125-exon-sc0000204-1491911889:28627..28995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:28627..33103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.14098	5.05264	4.75822	4.27832	19.0669	17.8843	20.2974	18.5607	21.4415	16.913	25.0745	20.411	19.4677	20.1328	28.0121	31.2724	22.9013	33.1455	30.0513	27.4878	42.659	40.867	32.1609	38.8332	62.3105	51.1619	35.2118	40.3373	104.606	110.994
Blast
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BLAST of TCONS_00015125 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.180e-33
Identity = 106/371 (28.57%), Postives = 165/371 (44.47%), Query Frame = 3 
Query:  750 YIYDVLLTELEPNTRYYYSCGTEEYMTPTYNFTTPITPGDKTPFNFIVYGDMGLEAFPEGIETAKLVRQEIDSHDVRFVYHHGDLSYATGL--AYIWEQWFHLIQPYASLIPYMVGIGNHEYDHVSGHAKDPSKQPNFRPSWFNGGTDSGGECGVPMFHRWHMPDNGLAIYWYSYDYGMVHMVMLSTE------HDYRPGSPQYIWLENDLKSV--DRTKTPFIMVGGHRPMYCSEA-------YPVNYGIALHMQQY-FEDMFYKYKVTVGLWAHYHAYERTCKVYR----NECRD------DGILHLLIGSGG--RSLDRDEWYKKEWSVFHKTDYGYGRFSVKNSTHIFFEFV-ENSSQTVLDSVWIT 1769
            YI+ V L +L P  +Y Y CG+ +  +  + F         +P    V+GD+G +  P+ +     +R++        V H GD +Y      A + +++  LI+P A+ +PYM   GNHE  +   + K                             R+ MP +   + WYS+D G  H++  STE      +       Q+ WLE+DL+    +R   P+I+  GHRPMYCS A       +       L  + Y  ED+FYKY V + LWAH H+YER   +Y     N  R+       G +H++ GS G    L     + + WS     +YGY R  + N THI  + V ++    ++D VW+ 
Sbjct:   92 YIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRALKNGAHWSP-RLAVFGDLGADN-PKAVPR---LRRDTQQGMYDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERYNFSNYKA----------------------------RFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVV 428
The following BLAST results are available for this feature:
BLAST of TCONS_00015125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACP75.180e-3328.57Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE... [more]
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