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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015113 ID=TCONS_00015113|Name=TCONS_00015113|organism=Clytia hemisphaerica|type=transcript|length=726bp
CTTGCTCAAGCAAGCAAGTCAATCAGCAGAATGAAGATTAGGAAAGCTTT
GCTGCTTTTGGCACTTTGTGTCTATGCAGTACATTGTACCGAAGAGAGCC
AACAAGAAAATGCTCTCGAAGATCAGAAACAacaagatgaagaagaagac
cAATCACAAaacatgatgacgtcatcacaagaTGATCGAGATGCTATGGA
GCAAGATGAAAGCCCATTGGACAATGTGAAAGATGAAGAAGTACAGGTTG
CAGAAGACCAGAATGACCCGCAACCAAGACGAAGGCGTCGACGACGCCGA
CGAAGACGTCGAAGCCGACGACGCAGGAGTCGACGAAGCCGTCGCCGACG
AAGACGATACGGTTTCCGAAGACGTCGCCCATATTACCCTTACGGTGGTT
ATTCTTACGGCGGCGGTTACCCTTACGGCGAATATCCTAACGGTGGATAT
CCTTACAACAAGCGCTATGGAAAATAATTCATTTCACGCACGTCAATGGT
AATTTCTTATTGGGAATGGTGTTTGAGATCTGATTTTTTGTAATAATGGG
AAAACTTTCTTCTTGGTAACTCGTAAGAAATATCGtttcttctaaaaaaa
atcaaattcgaaGTTTTTTCGTGTGATTGAGCTAATgcattattttttat
atatacgGAACATCTTAGGGGCCTAGAAAAGCTacttttttgaagttgaa
tttttCACAAGTAATAGATACTAAAC Run BLAST on NCBI protein sequence of TCONS_00015113-protein >TCONS_00015113-protein ID=TCONS_00015113-protein|Name=TCONS_00015113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
LAQASKSISRMKIRKALLLLALCVYAVHCTEESQQENALEDQKQQDEEED
QSQNMMTSSQDDRDAMEQDESPLDNVKDEEVQVAEDQNDPQPRRRRRRRR
RRRRSRRRRSRRSRRRRRRYGFRRRRPYYPYGGYSYGGGYPYGEYPNGGY
PYNKRYGK Run BLAST on NCBI transcript from alignment at sc0000204:5562..6847- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015113 ID=TCONS_00015113|Name=TCONS_00015113|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0000204:5562..6847- (Clytia hemisphaerica)
CTTGCTCAAGCAAGCAAGTCAATCAGCAGAATGAAGATTAGGAAAGCTTT
GCTGCTTTTGGCACTTTGTGTCTATGCAGTACATTGTAAGTTTTTCAATT
TCTTTCACTTTATATCCAAAAAGACTCTTGTTGTTAACAGGCTAGTACTT
TAGAGATACACTATTTCAGGAATTATGGAATGGATATTGCTTAGGCATTT
CTTGTACAAAAGAATGTACACATTAGAAGGATAAAAAATCATGTTCATCG
TAAATAAATTTCAGGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAG
ATCAGAAACAACAAGATGAAGAAGAAGACCAATCACAAAACATGATGACG
TCATCACAAGATGATCGAGATGCTATGGAGCAAGATGAAAGCCCATTGGA
CAATGTGAAAGATGAAGAAGTACAGGTTGCAGGTATGCTGCAAATACTAC
CATCCCTTTATTTGGATGGAGTTTTTTAATCAGTTTCTTGTTAAAGTTTT
TCTCATTTTTTGTTAACTTAGGTCCTTTACTCTAGGCCTTTTAGTTTAGT
GATCAGCTTGACCTTATCTATTTCTTAAATCTTATCTAAACCCTAATCCT
CTAGCAGTTATTATGCTACGATTTGTTTTAAACTTTAAAGTTGCAATTCA
AATATTAGTTATCGATTCTTCTCAAGGTTATCTTTAGAAATGATTCTCAT
ACCAGTTAGTGCTTGACCCTAGTTTTGTTCTTTATAACCCGAAACTTTAC
TATAATAGATAATTGTGAGTAATATCCGACCAAACGATATTTGTTTAAAT
TCTTTCAATACAGAAGACCAGAATGACCCGCAACCAAGACGAAGGCGTCG
ACGACGCCGACGAAGACGTCGAAGCCGACGACGCAGGAGTCGACGAAGCC
GTCGCCGACGAAGACGATACGGTTTCCGAAGACGTCGCCCATATTACCCT
TACGGTGGTTATTCTTACGGCGGCGGTTACCCTTACGGCGAATATCCTAA
CGGTGGATATCCTTACAACAAGCGCTATGGAAAATAATTCATTTCACGCA
CGTCAATGGTAATTTCTTATTGGGAATGGTGTTTGAGATCTGATTTTTTG
TAATAATGGGAAAACTTTCTTCTTGGTAACTCGTAAGAAATATCGTTTCT
TCTAAAAAAAATCAAATTCGAAGTTTTTTCGTGTGATTGAGCTAATGCAT
TATTTTTTATATATACGGAACATCTTAGGGGCCTAGAAAAGCTACTTTTT
TGAAGTTGAATTTTTCACAAGTAATAGATACTAAAC Coding sequence (CDS) from alignment at sc0000204:5562..6847- >TCONS_00015113 ID=TCONS_00015113|Name=TCONS_00015113|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at sc0000204:5562..6847- (Clytia hemisphaerica)
AAGACCAGAATGACCCGCAACCAAGACGAAGGCGTCGACGACGCCGACGA
AGACGTCGAAGCCGACGACGCAGGAGTCGACGAAGCCGTCGCCGACGAAG
ACGATACGGTTTCCGAAGACGTCGCCCATATTACCCTTACGGTGGTTATT
CTTACGGCGGCGGTTACCCTTACGGCGAATATCCTAACGGTGGATATCCT
TACAACAAGCGCTATGGAAAATAAGTACCGAAGAGAGCCAACAAGAAAAT
GCTCTCGAAGATCAGAAACAACAAGATGAAGAAGAAGACCAATCACAAAA
CATGATGACGTCATCACAAGATGATCGAGATGCTATGGAGCAAGATGAAA
GCCCATTGGACAATGTGAAAGATGAAGAAGTACAGGTTGCAGCTTGCTCA
AGCAAGCAAGTCAATCAGCAGAATGAAGATTAGGAAAGCTTTGCTGCTTT
TGGCACTTTGTGTCTATGCAGTACATTAAGACCAGAATGACCCGCAACCA
AGACGAAGGCGTCGACGACGCCGACGAAGACGTCGAAGCCGACGACGCAG
GAGTCGACGAAGCCGTCGCCGACGAAGACGATACGGTTTCCGAAGACGTC
GCCCATATTACCCTTACGGTGGTTATTCTTACGGCGGCGGTTACCCTTAC
GGCGAATATCCTAACGGTGGATATCCTTACAACAAGCGCTATGGAAAATA
AGTACCGAAGAGAGCCAACAAGAAAATGCTCTCGAAGATCAGAAACAACA
AGATGAAGAAGAAGACCAATCACAAAACATGATGACGTCATCACAAGATG
ATCGAGATGCTATGGAGCAAGATGAAAGCCCATTGGACAATGTGAAAGAT
GAAGAAGTACAGGTTGCAGCTTGCTCAAGCAAGCAAGTCAATCAGCAGAA
TGAAGATTAGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTATGCAGTA
CATTAAGACCAGAATGACCCGCAACCAAGACGAAGGCGTCGACGACGCCG
ACGAAGACGTCGAAGCCGACGACGCAGGAGTCGACGAAGCCGTCGCCGAC
GAAGACGATACGGTTTCCGAAGACGTCGCCCATATTACCCTTACGGTGGT
TATTCTTACGGCGGCGGTTACCCTTACGGCGAATATCCTAACGGTGGATA
TCCTTACAACAAGCGCTATGGAAAATAAGTACCGAAGAGAGCCAACAAGA
AAATGCTCTCGAAGATCAGAAACAACAAGATGAAGAAGAAGACCAATCAC
AAAACATGATGACGTCATCACAAGATGATCGAGATGCTATGGAGCAAGAT
GAAAGCCCATTGGACAATGTGAAAGATGAAGAAGTACAGGTTGCAGCTTG
CTCAAGCAAGCAAGTCAATCAGCAGAATGAAGATTAGGAAAGCTTTGCTG
CTTTTGGCACTTTGTGTCTATGCAGTACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015113-exon-sc0000204-1575043694:6763..6847 | TCONS_00015113-exon-sc0000204-1575043694:6763..6847 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1575043694:6416..6583 | TCONS_00015113-exon-sc0000204-1575043694:6416..6583 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1575043694:5562..6034 | TCONS_00015113-exon-sc0000204-1575043694:5562..6034 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1510915933:6763..6847 | TCONS_00015113-exon-sc0000204-1510915933:6763..6847 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1510915933:6416..6583 | TCONS_00015113-exon-sc0000204-1510915933:6416..6583 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1510915933:5562..6034 | TCONS_00015113-exon-sc0000204-1510915933:5562..6034 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1491911889:6763..6847 | TCONS_00015113-exon-sc0000204-1491911889:6763..6847 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1491911889:6416..6583 | TCONS_00015113-exon-sc0000204-1491911889:6416..6583 | Clytia hemisphaerica | exon |
| TCONS_00015113-exon-sc0000204-1491911889:5562..6034 | TCONS_00015113-exon-sc0000204-1491911889:5562..6034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000204 | supercontig | sc0000204:5562..6847 - |
Blast
The following BLAST results are available for this feature:
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