TCONS_00015107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015107
Unique NameTCONS_00015107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015107 ID=TCONS_00015107|Name=TCONS_00015107|organism=Clytia hemisphaerica|type=transcript|length=1583bp
TTCAGAATAATTCTCATTTAACCTTCAAAGTTAAGAGGAACAATTCAAAA
ACTCGTTCCATATCTCACCAATCGTCACGTTATTGCACTCTCCAACCGAA
AGCTTCAGACAAAACATGCGTATCCAAGTCAATGGAAAACCTATCTCATC
AACCAAAACCGTTCAAGAGCTCAACCCTACGTTGGAAGTCCACTAGTGAT
CTGTACACAACAATCACCCCTAAAGAAATGGAGATGGATACGAGGAGGTA
CGAGAAACGATGGCGAAATTTACTTACAGTCAATGAGTACACGATATTGA
AGGCTTTGTTGTCCCATTATAAGAAGAACAAGGATGTGGAAAGTTTAGTT
CTCAACGTGGTGCAATCTTTCAACAGAAACACTAGATTGGAATTATTGAA
TGACATCAGAAACTTGGTTCGTGATGAGCACGTGGAAAGTTGAGCGTCAC
AACACAATGCCGGCGAGTTTATCTAAACTGTGGTTCCAAAGCAACGAAAA
TGGTGACGTCAACGATGGATTCCCGACATCAACGCCACGACAACGCCCAA
GAAATAACGTGGTGGATAATTCTGGGCATAGCACCGATCCTCGATCTGTG
TCTGCATCATCGGGTTATCGAGGTAATCGATATCACACAATGAACGAACG
AAATCGACATCCTCGTAATGATTTTTTCGATTATGCTCCACCTCGTTCGC
ATTCGGTCGAGCAACGAGAACATTCGGATCGACCGACGCATTTGAAAACT
AAACGAGAACGCGATCAGCAACGATCGAAAAGTTTGAAGGCGCGGAACGA
ATGCCATTATCGTGAGTCATCCATTGATTCTTCGTTTAACACCGAGACCA
ACTGGATCTTAAAGAAACCCAACGACAATCAACAACGTCACCAAAACACG
TCTTATACGGCATCAAGTAGACGTCATGTCGGTGAAATATTCCCAACTGT
TGGTGATGACGTCAGAAGCTTTGAGATGGATTCGTCGCCACATCGAAGTT
ATGCAGAACATGATCAAAACAATAACGCCAATAATTATTCGCCATCCGGG
TTGTTTCACGCCCAAAGTTTCAAAGTAAACCCAATACATCAAGAAGATCA
TACAAGCACTGGCTATCTTCAATATCAAAACGATTCCCCTTTATCACATC
GCCGTCATAAATCAGTGCCTGATCTCAGCAATGTCGACCATTATCGCAGT
AGTAGTTTTTCAAGATCACCATCGTACAAAGATCATATTGCAGCGCATAA
TCTAGATATTCAAGTTGCGCCGCAGAAACCCACAAGAGGGAGACCGATGA
AACTTTCAGACGACCAGAATAAATATACTATACAACTAGGTAGCTCTTCT
ATGACTATTGAAAGTGTGACTGTACATAAACCTAGTCAAATTACCagagt
ttgaaaaggaagagAATCTTTTGTCATTGTATACAGTATATACAAAAGCC
ATGTtggtttttttctttcacttttcacttgatttttcactattttcagc
aatttaaaattaatttatttttgtagtattttagtaaattttcttatttt
tctagatatctattttgtatttatttatCGGAT
Run BLAST on NCBI

transcript from alignment at sc0000204:266233..271402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015107 ID=TCONS_00015107|Name=TCONS_00015107|organism=Clytia hemisphaerica|type=transcript|length=5170bp|location=Sequence derived from alignment at sc0000204:266233..271402+ (Clytia hemisphaerica)
TTCAGAATAATTCTCATTTAACCTTCAAAGTTAAGGTAGTATAGAAAAAA
TGACTGGATTTCAATTACTACTTTCAGACTGtttcaaactttgtttttat
ttataatgTTTCTGGTTTACCGCCTGGTCTTCCTAAAGTGATTTGCATTC
CAATATCAATTGGTAGTGCATGTTGGCTTTGTCGATTCAATTATTGCGAG
ACGCCTAAATTTGCCGACCCTGGGTTTAAacataaaattattaaaataat
ttacaGCTTGGATATTCAGGCTACTTTCTTTCCAGATAGGAGTTAGGGTC
AATGGTGAAGGGGTCAAAATGGCCAATTTATTTGAATCAAATCGTACAAT
CAAGTGAGGGTTAGGGTGCCTTTTGTAATCACTGCCGATATTTTAAATGa
atggtttgaaaaatctgctTCTTGTTTCATTCGATCGTCATCACTTTCTT
TTCAGAGGAACAATTCAAAAACTCGTTCCATATCTCACCAATCGTCACGT
TATTGCACTCTCCAACCGAAAGGTAGCTTTGCATTGATCTTGATAAGCCT
CAAAACATCTATGgaacgttcacaacatccatatgAAGAACTTGAAGAAT
TCTTTTCAACAGCTTTTTAAACTCAGAATTTGGCAAATCGAAAATGAACA
GTTTTTTATTAAGATTTCGTTTTATAAGAACTTCAAGGATTTATTGAGAA
TCTTGCTGAACATCAAAATCgttgatcaaatttttttatgtttattataA
AAATCAGGCCAAACCATTTTCAGGCTAAACATTTTTCTTGCTAAACCATT
TTcaggcttttgaaatttgaaattacatTAGTTTTGTTTTCTTCCTCATT
TTCGCTTGTTTGAGGCAAAATTTAAagggaaaatatattttgaccaaaaa
acttttcaaatttaaaagctcaaaattgaaTATAAGAATTTCCAGGCTTA
CTTTGATTTATGCGGACAATTCATCGGgcaaaaaagacgaaaaagtTGCT
CTGTGACGAACTTTTTAGCCGATAAGGTACACTAATCATTTATTTTTACA
GCTTCAGACAAAACATGCGTATCCAAGTCAATGGAAAACCTATCTCATCA
ACCAAAACCGTTCAAGAGCTCAACCCTACGTTGGAAGTCCACTAGTGATC
TGTACACAACAATCACCCCTAAAGAAATGGGTATAGTCAGTTTATGTTAA
TTTATGTTCAAcacatttctttataagaacaaactatttaagaacataag
gcttctattgtcaaaatattaagaacaagctaagaacattttaaggcttt
gtagaccctaaaacacccaatttcgtTGCGagaaatgggcaaaaatactc
acaaaattttcaaattaggagaaatattttactcaaCATTCTTCATGAGA
AAAGCAGTTTTGAGCTCTGAACGAAGGAGAAACGGCGTAGCTTAGAAGCG
AATACTTTTATAACAAATCTCTAATAGTAGTCCGCGCGCGAAAAAAGAGT
gctttatttttcgaaaaggGTACAAGATTTGGTATTCGTTCTTATCCTAT
CCGGATTTTGTCAAAGTATAAACAGTTGTCTAAGAAGAGAAATAAAAGGG
AGATCTCTTCTCGAAACTGCACAGACGCAAAATGTTAGTTCAAAATCGAA
AATAAGAATGTGGTTAGTCATATATTGCGATAGATTATTGATAAAATACT
CTCGGGTaactaatagccggggggggggggggggaaaaaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggacggctattattag
gtacccgagagtaagaaGAGACAAAGAGAGGAGATCTCTTCTCGAAACCG
TACAGAGACACAAAATCTTGgctgaaaatcgaaaataagaATGTGGTTAG
TCATATATTGCGATAGATTATTCATAAAAACTCAGCAGGACACTGTTTTA
TATCTCATTATTGTATCACAGATTGCTACAAACTTTTGATGAGATCAAGC
TATAGCCACAATATGTATGTTTTTCTCGCCATCTTTTAGATTAAGTCAAC
ATGATAGAGCAGATTATCGACAGTTCAAAACTCTTTCATTTTTTGCAATG
TAGATTTTTTGcttctaatttttttcatacGATATTCTTGACTCTTAGAG
ATGGATACGAGGAGGTACGAGAAACGATGGCGAAATTTACTTACAGTCAA
TGAGTACACGATATTGAAGGCTTTGTTGTCCCATGTAAGTCAAATACCTA
TCATTTGCGTAAACGTATATCATTAGCGTAAACGCAGTAATAATCTCGAT
AATAGATTTATTGAAAGGATTTGCATTTAATCATTGGAGTaggaaagtca
gaaaaaaatgtCCGCAATAAAAATTATCCCTTTTAACActcccttctcat
agacccggtAGCATTTTTTCAAGCTAgtgagtggggatgaaaataaagga
atgaaactcgatggggattgatattcccatattttttatggctgaggatt
taaattatctgaaaaattgtcagaaaattcagtgggggtgagaaaaatag
caaaataatttgcagtgaggactgatttatttgattattttcaggggaca
aaaatttatttatttatttattttccaccggggacgatattttggccaat
ttttccagtggaaaggggtcccagtgggtctgtgagaagggggtgtcttt
tATAAATGAAAAGGCCTTTTTCTTGTTTCTCGTaatgaattttttatcaa
tttcgtATTTATGGTTTTCCTGTATCTTGCAGTATAAGAAGAACAAGGAT
GTGGAAAGTTTAGTTCTCAACGTGGTGCAATCTTTCAACAGAAACACTAG
ATTGGAATTATTGAATGACATCAGGTTAGTTTCGGGGTGTCAACCTAAAG
ATGTTCAAAAACTAATGAAAACATATTTCCGTTTCATGCACGTCACTTTT
GAAACGAGAAAAAATTTCAGCCGGATTTTTGATCATCTGCAAGTGTTATC
AGAGTCCTCAGGAGGGGGAGGGAGTAATAAGTCAAATTGACTGACGGGTA
TGTACGTGTATGTTTTTCAAGatagcagaaatgcactgtaagggtggtct
ttaagggtatgaatttcaccgatttatTTGCTGCActgggtgcgattcta
aaagccaattttttcgccgcaatACCGTCAGTTGGTTAACCCGCTACCCA
TCCCCTGGTCAGAGTCGGAGCGGTTTAAAGGACAGGGTCAAAATTTAGGT
CGATTTAATAAACCATTCTTTCAACAACCACTTTTAATCAATGAGAATGC
TATCAAAAACTTAtttaagtgtttccgtttcatatcagacaatattttat
atcaggacagtgtcttgctattgttatattatgctgatattaACAAAAGA
CTgttcttcttttcctctttttgaccaatcttgctccacatccgtgtcaa
tccaatgtgaaaaatgcgaaataaaattgatgagtaagcaaacgatatca
caaAACCTTTAAGGGGCTGAGAACGAGTCTGAATATATACAAACCCatca
tttttctctttaatttaTTTGTAGAAACTTGGTTCGTGATGAGCACGTGG
AAAGGTATGACGATCTCATTCGATCCCAGTTCGATGGAACGTTCTTCAAA
ACACGTTCGAATAATCATGCACGTATGTTTCATCTACTTTTCCTTTCATC
GGTCCAAAGGAGTACAAACTCAAAAgtgaaactaattttcgttcTTTGCT
CGTTATCAAGAGGCATAGCAAATATCGAATTCTAAATTATTTAATACTTT
TAATTCCAATAAAAATGAAGCTCTGAAAACGTTTATTAGAGATTTCTATC
ACAATCATTACTATTTTTTTCGACAGTTGAGCGTCACAACACAATGCCGG
CGAGTTTATCTAAACTGTGGTTCCAAAGCAACGAAAATGGTGACGTCAAC
GATGGATTCCCGACATCAACGCCACGACAACGCCCAAGAAATAACGTGGT
GGATAATTCTGGGCATAGCACCGATCCTCGATCTGTGTCTGCATCATCGG
GTTATCGAGGTAATCGATATCACACAATGAACGAACGAAATCGACATCCT
CGTAATGATTTTTTCGATTATGCTCCACCTCGTTCGCATTCGGTCGAGCA
ACGAGAACATTCGGATCGACCGACGCATTTGAAAACTAAACGAGAACGCG
ATCAGCAACGATCGAAAAGTTTGAAGGCGCGGAACGAATGCCATTATCGT
GAGTCATCCATTGATTCTTCGTTTAACACCGAGACCAACTGGATCTTAAA
GAAACCCAACGACAATCAACAACGTCACCAAAACACGTCTTATACGGCAT
CAAGTAGACGTCATGTCGGTGAAATATTCCCAACTGTTGGTGATGACGTC
AGAAGCTTTGAGATGGATTCGTCGCCACATCGAAGTTATGCAGAACATGA
TCAAAACAATAACGCCAATAATTATTCGCCATCCGGGTTGTTTCACGCCC
AAAGTTTCAAAGTAAACCCAATACATCAAGAAGATCATACAAGCACTGGC
TATCTTCAATATCAAAACGATTCCCCTTTATCACATCGCCGTCATAAATC
AGTGCCTGATCTCAGCAATGTCGACCATTATCGCAGTAGTAGTTTTTCAA
GATCACCATCGTACAAAGATCATATTGCAGCGCATAATCTAGATATTCAA
GTTGCGCCGCAGAAACCCACAAGAGGGAGACCGATGAAACTTTCAGACGA
CCAGAATAAATATACTATACAACTAGGTAGCTCTTCTATGACTATTGAAA
GTGTGACTGTACATAAACCTAGTCAAATTACCagagtttgaaaaggaaga
gAATCTTTTGTCATTGTATACAGTATATACAAAAGCCATGTtggtttttt
tctttcacttttcacttgatttttcactattttcagcaatttaaaattaa
tttatttttgtagtattttagtaaattttcttatttttctagatatctat
tttgtatttatttatCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008466XLOC_008466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015107-exon-sc0000204-1491911889:266233..266267TCONS_00015107-exon-sc0000204-1491911889:266233..266267Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:266233..266267TCONS_00015107-exon-sc0000204-1510915933:266233..266267Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:266233..266267TCONS_00015107-exon-sc0000204-1575043694:266233..266267Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:266688..266754TCONS_00015107-exon-sc0000204-1491911889:266688..266754Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:266688..266754TCONS_00015107-exon-sc0000204-1510915933:266688..266754Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:266688..266754TCONS_00015107-exon-sc0000204-1575043694:266688..266754Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:267284..267412TCONS_00015107-exon-sc0000204-1491911889:267284..267412Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:267284..267412TCONS_00015107-exon-sc0000204-1510915933:267284..267412Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:267284..267412TCONS_00015107-exon-sc0000204-1575043694:267284..267412Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:268531..268616TCONS_00015107-exon-sc0000204-1491911889:268531..268616Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:268531..268616TCONS_00015107-exon-sc0000204-1510915933:268531..268616Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:268531..268616TCONS_00015107-exon-sc0000204-1575043694:268531..268616Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:269165..269256TCONS_00015107-exon-sc0000204-1491911889:269165..269256Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:269165..269256TCONS_00015107-exon-sc0000204-1510915933:269165..269256Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:269165..269256TCONS_00015107-exon-sc0000204-1575043694:269165..269256Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:269957..269986TCONS_00015107-exon-sc0000204-1491911889:269957..269986Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:269957..269986TCONS_00015107-exon-sc0000204-1510915933:269957..269986Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:269957..269986TCONS_00015107-exon-sc0000204-1575043694:269957..269986Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1491911889:270259..271402TCONS_00015107-exon-sc0000204-1491911889:270259..271402Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1510915933:270259..271402TCONS_00015107-exon-sc0000204-1510915933:270259..271402Clytia hemisphaericaexon
TCONS_00015107-exon-sc0000204-1575043694:270259..271402TCONS_00015107-exon-sc0000204-1575043694:270259..271402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:266233..271402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9507	9.02912	3.92221	2.35661	8.9837	7.3095	4.04389	4.03199	1.51283	4.80331	2.43069	1.86314	0.398427	1.07417	0.306768	0.525935	6.72587	6.25604	0.952239	0.823403	8.91871	7.85914	7.35136	6.99112	4.39467	7.3823	2.23691	3.65448	2.72812	1.77463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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