TCONS_00015105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015105
Unique NameTCONS_00015105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015105 ID=TCONS_00015105|Name=TCONS_00015105|organism=Clytia hemisphaerica|type=transcript|length=2510bp
ATATATTATCTAATTGATGATTTATGTTACTTCTTTTTGTTACTAGACTT
AAAACACTATGAATCATTAATAACAGAGATGTCTCAAAAGACAACCACAC
TTATTCAACATATTAAAGCATTGGGCTTAAGTCAAAAAGAATGTGCGAAA
GTCATAGAATATCTAAATGATTATGCTGAGGATAAATCTGTAGtaaatct
tgtaaaaaaattgatCAGTCTTCTTCAACCTGTTGAATATTTGTCTTTAT
TAAAAGACATTCGACATTCAATCCGTCAAAAAGATCAACCTTATTTCGAC
AAACTaatcaatatttatttatatgGAAACGATGCTTCGCAGAACAATCA
TTCACACAGAAAGACACATTCTGCTTTAAATGCAACAGAACCAAGATATG
TAACATCTCATGGAAATAAATGGTCCTTTAAAGTTATAAACATTGAAAAA
GTATCAGGTAATGTGGGTTTGTTTTTATGTGGAAAGATTGAATCCATCCC
TGGACTCAAAGTTGGCTATATTGATGAAGGAAGTATTGCTCATacaaaag
gtgtcaaaaaaggcGATTATATTATAGAGGTCAATGGTAAATCTATGGAG
AAAATAAGCTTGAAGACTGCACTAGCTGTATTGCCACTGTTGACATCGTT
GAAGCTCATCATTAAGCGCcctgaaaaaattatcaaaactttATCAACAT
CTCTGAACCCCTGGaccaaagaaaaaatttatccgACCACAACATCTGCA
TCCTATACGACTGTAAAGTCGCCAAGCCAACAAACGATCAAGCTAGTTCG
AAAGTCTTTCAAAGATTCCATTGGATTCTCAATACGTGGTGGAAACGAAT
ATCTTAGTCCTATATATGTGTCAGGTGTGGATAAGTTTTCGATCGCTGAA
TCCAGTGGTTTGAAGGTTGGAGATTGTATCTTGAGCATCAATGGAAAAGA
TTGTCGTGGACTAAATCATCATGAAGCTGTCCAATTTATTCAGAATAATT
CTCATTTAACCTTCAAAGTTAAGAGGAACAATTCAAAAACTCGTTCCATA
TCTCACCAATCGTCACGTTATTGCACTCTCCAACCGAAAGAGATGGATAC
GAGGAGGTACGAGAAACGATGGCGAAATTTACTTACAGTCAATGAGTACA
CGATATTGAAGGCTTTGTTGTCCCATTATAAGAAGAACAAGGATGTGGAA
AGTTTAGTTCTCAACGTGGTGCAATCTTTCAACAGAAACACTAGATTGGA
ATTATTGAATGACATCAGAAACTTGGTTCGTGATGAGCACGTGGAAAGGT
ATGACGATCTCATTCGATCCCAGTTCGATGGAACGTTCTTCAAAACACGT
TCGAATAATCATGCACTTGAGCGTCACAACACAATGCCGGCGAGTTTATC
TAAACTGTGGTTCCAAAGCAACGAAAATGGTGACGTCAACGATGGATTCC
CGACATCAACGCCACGACAACGCCCAAGAAATAACGTGGTGGATAATTCT
GGGCATAGCACCGATCCTCGATCTGTGTCTGCATCATCGGGTTATCGAGG
TAATCGATATCACACAATGAACGAACGAAATCGACATCCTCGTAATGATT
TTTTCGATTATGCTCCACCTCGTTCGCATTCGGTCGAGCAACGAGAACAT
TCGGATCGACCGACGCATTTGAAAACTAAACGAGAACGCGATCAGCAACG
ATCGAAAAGTTTGAAGGCGCGGAACGAATGCCATTATCGTGAGTCATCCA
TTGATTCTTCGTTTAACACCGAGACCAACTGGATCTTAAAGAAACCCAAC
GACAATCAACAACGTCACCAAAACACGTCTTATACGGCATCAAGTAGACG
TCATGTCGGTGAAATATTCCCAACTGTTGGTGATGACGTCAGAAGCTTTG
AGATGGATTCGTCGCCACATCGAAGTTATGCAGAACATGATCAAAACAAT
AACGCCAATAATTATTCGCCATCCGGGTTGTTTCACGCCCAAAGTTTCAA
AGTAAACCCAATACATCAAGAAGATCATACAAGCACTGGCTATCTTCAAT
ATCAAAACGATTCCCCTTTATCACATCGCCGTCATAAATCAGTGCCTGAT
CTCAGCAATGTCGACCATTATCGCAGTAGTAGTTTTTCAAGATCACCATC
GTACAAAGATCATATTGCAGCGCATAATCTAGATATTCAAGTTGCGCCGC
AGAAACCCACAAGAGGGAGACCGATGAAACTTTCAGACGACCAGAATAAA
TATACTATACAACTAGGTAGCTCTTCTATGACTATTGAAAGTGTGACTGT
ACATAAACCTAGTCAAATTACCagagtttgaaaaggaagagAATCTTTTG
TCATTGTATACAGTATATACAAAAGCCATGTtggtttttttctttcactt
ttcacttgatttttcactattttcagcaatttaaaattaatttatttttg
tagtattttagtaaattttcttatttttctagatatctattttgtattta
tttatCGGAT
Run BLAST on NCBI

transcript from alignment at sc0000204:259559..271402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015105 ID=TCONS_00015105|Name=TCONS_00015105|organism=Clytia hemisphaerica|type=transcript|length=11844bp|location=Sequence derived from alignment at sc0000204:259559..271402+ (Clytia hemisphaerica)
ATATATTATCTAATTGATGATTTATGTTACTTCTTTTTGTTACTAGACTT
AAAACACTATGAATCATTAATAACAGAGATGTCTCAAAAGACAACCACAC
TTATTCAACATATTAAAGCATTGGGCTTAAGTCAAAAAGAATGTGCGAAA
GTCATAGAATATCTAAATGATTATGCTGAGGATAAATCTGTAGtaaatct
tgtaaaaaaattgatCAGTCTTCTTCAACCTGTTGAATATTTGTCTTTAT
TAAAAGACATTCGACATTCAATCCGTCAAAAAGATCAACCTTATTTCGAC
AAACTaatcaatatttatttatatgGAAACGATGCTTCGCAGAACAATCA
TTCACACAGAAAGACACATTCTGCTTTAAATGCAACAGAACCAAGATATG
TAACATCTCATGGAAATAAATGGTCCTTTAAAGTTATAAACATTGAAAAA
GTATCAGGTAATGTGGGTTTGTTTTTATGTGGAAAGATTGAATCCATCCC
TGGACTCAAAGTTGGCTATATTGATGAAGGAAGTATTGCTCATacaaaag
gtgtcaaaaaaggcGATTATATTATAGAGGTCAATGGTAAATCTATGGAG
AAAATAAGCTTGAAGACTGCACTAGCTGTATTGCCACTGTTGACATCGTT
GAAGCTCATCATTAAGCGCcctgaaaaaattatcaaaactttATCAACAT
CTCTGAACCCCTGGTATGTCATGTTTTATAATGTTTATAATGcttgaaac
aaatttttttggctaGAAAAGTGTACTTCCCAAGGATTCAAGTTTTACAT
TCATTGTTTGTGACTAGGAATTCATCTCagataaaatttctttgtaCTTT
TTCTTAAGGaccaaagaaaaaatttatccgACCACAACATCTGCATCCTA
TACGACTGTAAAGGTATACTCTTTGGATTTAACTTAATCTCAATTATTGT
AGTGATTCTTCATCGCTGGTTAGTGCAATACTTTGCCTCAAAAGCTTACA
AGATTATTTTCGTACATTTGCTTGTATCACAGGGGGAGGTACCGAGTCAG
TGTACTGACCCACAgagtactaacttgatttttggatttatttccaaaaa
attagaccaccaccctttttagtacagtACTAACTTTCTTCCATGACCGG
GacttgacaccacccttttagtacactgtactaacttttctCCACGACCA
GATTTTTAATACCGccctttcagtacactgtactaacttatACTATATAC
ATAGGAATTTGCTGGGTTCGTGTGTTTTTACCACTGAAATTAGTACAATG
TACAAACTTCTCAGTGTGTATCAATTCAGAACACattcagtacactgtac
taacccAATTCAACCTAAAAAAATACACCACCCCAACAGCTATGGGTCAC
TACACTGACCCCGCACCTCCTGTGTAGCAAGCGTGAATTTTTGGAATGGA
GTTAATGTATTCGCTCTTACCACACTTTTTCgactattgtattatcgact
ttttgtttattttcttcagTCGCCAAGCCAACAAACGATCAAGCTAGTTC
GAAAGTCTTTCAAAGATTCCATTGGATTCTCAATACGTGGTGGAAACGAA
TATCTTAGTCCTATATATGTGTCAGGGTTGGTTGATTATTTGATGTTTCA
TTGTGTTCAATTTTTACTTCCGTTGGTTGAATTtctaattaaaggtttta
ttcttatttaagtgttctcgtttcatatcagacacatattttaaATCAGG
AAAGTGTCAGCCTATTATTATAAGCAAAAAAGATGTatttctctttctga
ccaatcttgctccacatccgtatcaattcaatataaaaaagcttgtaaat
taaaatcgatgagtaagcaaacgaaaTCGCCAGTTAAGTTTAACCAGAAG
ATTCTATGTGTCATCCGAATCGCTATTATGAATCCTATTTCCAAAGTATT
ACTTCTTGCTCTGACAGTCAAGTGAATACTCGACCTTAGGAACAGACGTT
TTAATTTCAATCGGATCTTTTCACACTTATTTGAATTGTAACAttccaca
gatatcttatataaaccACTAAATAGAGctattttaatcaaaataatccA
CTANGATATCTTATATAAACCACTAGATAGAGctattttaatcaaaataa
tccACTATCTTTGACAAGTAGACCAAAGTTCGGTGCCTGCAATTTGATCG
ATCAAGTCTATCTTTTGGCTCGTCACTTCGCGCCATTCATGTTTTTTTGC
TtggttgaacaaattgccggtaccgaacttTGACCTACTGAGAcgtactt
tcagcaaagatggcgtattctttttcttcacctgccgttgcttgggaaat
acagagtagctctatctagtgtttttataagatatctatgCGGGCTACCC
GCTCAAAGACCTTCATGAGTTCtaacattttttattcttcGAGATGAATC
GCTTAATTGTTTTAATGACTTTAATTACACTTAATGCATTCGTCCACACT
TCGATAATTGATTACGTTGCTGTTACAAAGAATGAAACCTTTTGTAAACA
CATCCCATCGAAAATCAAGAGAATGAAATCGCCTGTCAGTTATTACTCGA
ACTCTGATGCAGATTTTAATCTTGTATTATCTGGTGATATCGAGCTCAAT
CCGGGACCAGCACCAAAATGCACCGAGTGTGATAAAGGAGTTGGAACAAA
TCGCAAGCGCCTATATTGTACCAAATGTCTGTGTCTAACCCATGCATCAT
GTTCGAACCtctcaaaatatgaacaaaaCCGTATGACATCTCGAAACGTC
GTGGAATGGACATGTCAGGGATGTATCATGTCCGTCTTTCCATTTTTTAG
TCTACGAGATCTGAATGACAGTCTTCCGATCGATGAACTGATAATCGAAA
ATCCTCATTTAAATTTATTAAACGATAATCGAAATCTAACCTCCATCGCA
CACTTAAACACTCAATCACTTCTTTCAACGTTCACTGAATTTTCTTCTAT
GTTGACGGACCTACAATTCGACATTATTACCCTCAACGAAACTTGGCTTC
AGGACAACAAGGAGCAAGCGAAATATGTTGAAATTGCTGGTTATGTACCC
ATTTTCAAGCACCGAAAAACACGAGGTGGTGGAGTTGGTCTTTACGCAAA
ATACTATCATCATTTTCAACCGCGCAAGGACTTAACGAAAAACTCATCCC
TTGAAATTCTGGCTGCCGAATTCCGAGGCCGAAACAAAAACACACCTTAT
CTCGTTGTCACCGTTTACCAACCGAACTTCAAGGAAAAAGNCGAAATTGC
TGGTTAAATACCCATTTTCAAGCACCGAAAAACACGAGGTGGTGGAGTTG
GTCTTTACGCAAAATACTATCATCATTTTCAACCGCGCAAGGACTTAACG
AAAAACTCATCCCTTGAAATTGTGGCTGCCGAATTCCGAGGCCGAAACAA
AAACACACCTTATCTCGTAGTCACCGTTTACCAACCGAACttcaaggaaa
aagaaaagcttCATTTGCACGAAATGGAATGGCGTTATCATTCTGACCGG
TGATATGAACATTGATCTTATCGGTCAAGAAAAAGAATCGACAATTCGTT
ACAAAGAAATACTTACCTCGTACAACCTCTATCAGCATATCTCAAAACCA
ACACGACTCGATAAAACTTTAATAGATCATATTATAACCAATATTCCTAA
CAAAGTCACCCACAGCAATGTCATGCCCACCGACGAGATAAGTGACCATA
ATACCCCCTACATCTTGCTGAATATTAAAAAGGAACGATTCCAACCTCGC
TACAAGTTTCTTCGTGATGACAAAAATCTCAATATGAACTCATATGTCAA
TGATGTAGCACAAGCACCCTTTAACACCATTTATGCTTTCGACAATCCAG
AAGACCAAATCGATATCCTCAACTATCTAATCCTCGAATGCATCGAAAAT
CATGCTCCGCTGAAACGTGTGAAGCTGACCCGCCCCATCGCGCCATGGAT
GAGGGACCCAGCTATCAAAAACTGTCGAGCTCAACTTGAACTTTCTCGTC
AACAGGCTAAGTTGAACCCACAAGACAAAACCACCTACAAAGAAAACctc
aaaaagtacaaaaagagactgaaagaaatcaaaaataacttttttagaaa
atcccTATCTTCGAGGGATCCAAAAGCCGTTTGAAGTACAATACATCGAG
TTTTGGATAATCAAAAATCCCGAATTAAGCACCATCCATCCGAGATGAAT
GATTCCTATTGCAAATTAGCATCCGAACTCACCGGCAAACCTAACGAAGA
CATTACCAGATAACATCGAAACGATAGATGACGAAAACGCGTTTAAAATT
CATCATGTCACTTATGATGAAGTATGTCAGATCTTAAAGAGCCTGAAAAA
TGACTGTTCTTGCGGCTCTGATAATATCTCTATTCGTTTTGTAAAACCGA
TATCGGAATTCATCACATCGCCACTTGTCAATATCATCAATAACGGCATT
GACAAGAAAATCTTCCCTCGACAATGGAAAATTGCTCGCGTATGCCCTAT
TCCGAAAATCGACCTACCTATCAAAATCAAAGACTATCACCCAATATCGG
TACTCCCTGTGCTCTCGAAAGTCTTTGAACGAGTTATCTTGCATCAGCTC
TGTAAATTTATTGAAGATAAAGCTCTCTATCGTCAAACGCAGTCCGGGTT
TCGTAAAGGACATTCTACAACTACCTTACTGATCAAGCTTCGAGATGACA
TCAAGAAAGCAATGAGCAAAAGTGAAGTAACTCTTTCCATTCTAATTGAT
TACTCCAAAGTCTTTGACACAATAGACCATCTTAATCTCTTGTTGAAACT
TCGAGAtatgaatttttcttctgattctCTACAAATCCTATCGAGCTATT
TATTGGAGAGGAGACAGTATGTACAGGTTGAGGATAAAACCTCTTCATTA
AAACCTATGTATTTTGGAGTTCCACAGGGAAGTATATTAGGCCCTGTGTT
ATTCAAGTTTTATGTCGTCGAGCTTTCAGGTCAAGTAACATCATCCAGTA
TTCAATACGCTGACGATACCACCCTTTACCGTCACTGTAAACTCAAGGAC
TTGCAGGAAACCATCAAGGATATGGAGAAGGATGTTGATAACCTTCAGTC
GTGGTCAAAAGACAGTAACCTACTATTTAATAGTGGCAAACTACAactca
tcatttttcattctcaaCGCTTgaggaattttccaaaaaatcaaagcCAA
CTATTCCGCTGCTCTGGCCGATCTATCGAGCACAAAACCTACGTTAAATT
GCTTGGTGTCTATCTTGATCATAACTTAACATGGTCAACACATATCAACG
AAATCATCAAATCCTCTCAAGGAACATTACGAGCACTACGAAAATTCAGT
CGCTTTACTCCATTTCATGTTCGCAAGACTCTGGCTGAAACGATGATATT
ATCCAAGCTTAACTAGAGCAATGTTGTATATGCGCAAATTCCAAAGTACC
AAGTAGAACGTCTTCAAAAGATCCAAAACATTGCAGCTGGGTACGTGCTT
TCTCGATTCGCTACTTTAAATGACGtaattcaactaaaatggctaCCAGT
CAAAGAGTACATCGAATTTAACACCGCTAAAATTGTTCACAAGTCACGTC
GAGATAAAAATCATCCCAGTTATCTAAATGTCGAATTCTCTAACCCTAGT
AAAAAGCTTCGCTGTACACTCAAAGAACCAATGGTCAAAGTTGTTAATGA
TGGTACATTTCAATGTCAAGCTCGTTGGTATGATGATCTGCCAGAAAaca
taaaatctttaaagacTCTAGAAGAATTTAATAAAGNNNNNNNNCTGTAC
ACTCAAAGAACCAATGGTCAAAGTTGTTAATGATGGTACATTTCAATGTC
AAGCTCGTTGGTATGATGATCTGCCAGAAaacataaaatctttaaaaact
cTAGAAGAATTTAATAAAGAagctaaaaaatattattttgataaagCATT
AGCCAGGGTTTTATCCCTGTGATTTTTTCCTACTCTCTGAATTTAGCTCA
GCACTGCTATTTAGTTATCTATCTTTTTCCCCAACCATACTATCTAGCTC
GAACATTCCAATTTTTTCTCACCCCCAGGTCACCCAACGATCTTAATTAT
TAATTATCaatttcaaatccaaattagCATTATAAATATTTTGTCACTTT
AATTATTTATGTATTTTAcggtataaatatttttttttctttattgactt
ATTAATCTTACAGCCTTTTGTTTACCGTCAATGTTTTCTCGACTTCCAGC
AGGCCTAGCTCTATACCTATATCTCATCCTTAATTCAATCTCTTGCCAGT
CCTGTATCTTCAGCATTCTTTAATTACAttttaaatcaatataaaaattt
tactatatttaataatttaataaCTTATATCttttgcattttcattttca
taattcTTAGTTTAGACGGAAgaacaattttgtaaaaattgaagTCGAAT
AAATgttaaataataaaaataataataataatattctaatACAGTATCAT
TCTTATTCCAGTGTGGATAAGTTTTCGATCGCTGAATCCAGTGGTTTGAA
GGTTGGAGATTGTATCTTGAGCATCAATGGAAAAGATTGTCGTGGACTAA
ATCATCATGAAGCTGTCCAATTTATTCAGAATAATTCTCATTTAACCTTC
AAAGTTAAGGTAGTATAGAAAAAATGACTGGATTTCAATTACTACTTTCA
GACTGtttcaaactttgtttttatttataatgTTTCTGGTTTACCGCCTG
GTCTTCCTAAAGTGATTTGCATTCCAATATCAATTGGTAGTGCATGTTGG
CTTTGTCGATTCAATTATTGCGAGACGCCTAAATTTGCCGACCCTGGGTT
TAAacataaaattattaaaataatttacaGCTTGGATATTCAGGCTACTT
TCTTTCCAGATAGGAGTTAGGGTCAATGGTGAAGGGGTCAAAATGGCCAA
TTTATTTGAATCAAATCGTACAATCAAGTGAGGGTTAGGGTGCCTTTTGT
AATCACTGCCGATATTTTAAATGaatggtttgaaaaatctgctTCTTGTT
TCATTCGATCGTCATCACTTTCTTTTCAGAGGAACAATTCAAAAACTCGT
TCCATATCTCACCAATCGTCACGTTATTGCACTCTCCAACCGAAAGGTAG
CTTTGCATTGATCTTGATAAGCCTCAAAACATCTATGgaacgttcacaac
atccatatgAAGAACTTGAAGAATTCTTTTCAACAGCTTTTTAAACTCAG
AATTTGGCAAATCGAAAATGAACAGTTTTTTATTAAGATTTCGTTTTATA
AGAACTTCAAGGATTTATTGAGAATCTTGCTGAACATCAAAATCgttgat
caaatttttttatgtttattataAAAATCAGGCCAAACCATTTTCAGGCT
AAACATTTTTCTTGCTAAACCATTTTcaggcttttgaaatttgaaattac
atTAGTTTTGTTTTCTTCCTCATTTTCGCTTGTTTGAGGCAAAATTTAAa
gggaaaatatattttgaccaaaaaacttttcaaatttaaaagctcaaaat
tgaaTATAAGAATTTCCAGGCTTACTTTGATTTATGCGGACAATTCATCG
GgcaaaaaagacgaaaaagtTGCTCTGTGACGAACTTTTTAGCCGATAAG
GTACACTAATCATTTATTTTTACAGCTTCAGACAAAACATGCGTATCCAA
GTCAATGGAAAACCTATCTCATCAACCAAAACCGTTCAAGAGCTCAACCC
TACGTTGGAAGTCCACTAGTGATCTGTACACAACAATCACCCCTAAAGAA
ATGGGTATAGTCAGTTTATGTTAATTTATGTTCAAcacatttctttataa
gaacaaactatttaagaacataaggcttctattgtcaaaatattaagaac
aagctaagaacattttaaggctttgtagaccctaaaacacccaatttcgt
TGCGagaaatgggcaaaaatactcacaaaattttcaaattaggagaaata
ttttactcaaCATTCTTCATGAGAAAAGCAGTTTTGAGCTCTGAACGAAG
GAGAAACGGCGTAGCTTAGAAGCGAATACTTTTATAACAAATCTCTAATA
GTAGTCCGCGCGCGAAAAAAGAGTgctttatttttcgaaaaggGTACAAG
ATTTGGTATTCGTTCTTATCCTATCCGGATTTTGTCAAAGTATAAACAGT
TGTCTAAGAAGAGAAATAAAAGGGAGATCTCTTCTCGAAACTGCACAGAC
GCAAAATGTTAGTTCAAAATCGAAAATAAGAATGTGGTTAGTCATATATT
GCGATAGATTATTGATAAAATACTCTCGGGTaactaatagccgggggggg
ggggggggaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNggggggggacggctattattaggtacccgagagtaagaaGAGACAAAG
AGAGGAGATCTCTTCTCGAAACCGTACAGAGACACAAAATCTTGgctgaa
aatcgaaaataagaATGTGGTTAGTCATATATTGCGATAGATTATTCATA
AAAACTCAGCAGGACACTGTTTTATATCTCATTATTGTATCACAGATTGC
TACAAACTTTTGATGAGATCAAGCTATAGCCACAATATGTATGTTTTTCT
CGCCATCTTTTAGATTAAGTCAACATGATAGAGCAGATTATCGACAGTTC
AAAACTCTTTCATTTTTTGCAATGTAGATTTTTTGcttctaatttttttc
atacGATATTCTTGACTCTTAGAGATGGATACGAGGAGGTACGAGAAACG
ATGGCGAAATTTACTTACAGTCAATGAGTACACGATATTGAAGGCTTTGT
TGTCCCATGTAAGTCAAATACCTATCATTTGCGTAAACGTATATCATTAG
CGTAAACGCAGTAATAATCTCGATAATAGATTTATTGAAAGGATTTGCAT
TTAATCATTGGAGTaggaaagtcagaaaaaaatgtCCGCAATAAAAATTA
TCCCTTTTAACActcccttctcatagacccggtAGCATTTTTTCAAGCTA
gtgagtggggatgaaaataaaggaatgaaactcgatggggattgatattc
ccatattttttatggctgaggatttaaattatctgaaaaattgtcagaaa
attcagtgggggtgagaaaaatagcaaaataatttgcagtgaggactgat
ttatttgattattttcaggggacaaaaatttatttatttatttattttcc
accggggacgatattttggccaatttttccagtggaaaggggtcccagtg
ggtctgtgagaagggggtgtcttttATAAATGAAAAGGCCTTTTTCTTGT
TTCTCGTaatgaattttttatcaatttcgtATTTATGGTTTTCCTGTATC
TTGCAGTATAAGAAGAACAAGGATGTGGAAAGTTTAGTTCTCAACGTGGT
GCAATCTTTCAACAGAAACACTAGATTGGAATTATTGAATGACATCAGGT
TAGTTTCGGGGTGTCAACCTAAAGATGTTCAAAAACTAATGAAAACATAT
TTCCGTTTCATGCACGTCACTTTTGAAACGAGAAAAAATTTCAGCCGGAT
TTTTGATCATCTGCAAGTGTTATCAGAGTCCTCAGGAGGGGGAGGGAGTA
ATAAGTCAAATTGACTGACGGGTATGTACGTGTATGTTTTTCAAGatagc
agaaatgcactgtaagggtggtctttaagggtatgaatttcaccgattta
tTTGCTGCActgggtgcgattctaaaagccaattttttcgccgcaatACC
GTCAGTTGGTTAACCCGCTACCCATCCCCTGGTCAGAGTCGGAGCGGTTT
AAAGGACAGGGTCAAAATTTAGGTCGATTTAATAAACCATTCTTTCAACA
ACCACTTTTAATCAATGAGAATGCTATCAAAAACTTAtttaagtgtttcc
gtttcatatcagacaatattttatatcaggacagtgtcttgctattgtta
tattatgctgatattaACAAAAGACTgttcttcttttcctctttttgacc
aatcttgctccacatccgtgtcaatccaatgtgaaaaatgcgaaataaaa
ttgatgagtaagcaaacgatatcacaaAACCTTTAAGGGGCTGAGAACGA
GTCTGAATATATACAAACCCatcatttttctctttaatttaTTTGTAGAA
ACTTGGTTCGTGATGAGCACGTGGAAAGGTATGACGATCTCATTCGATCC
CAGTTCGATGGAACGTTCTTCAAAACACGTTCGAATAATCATGCACGTAT
GTTTCATCTACTTTTCCTTTCATCGGTCCAAAGGAGTACAAACTCAAAAg
tgaaactaattttcgttcTTTGCTCGTTATCAAGAGGCATAGCAAATATC
GAATTCTAAATTATTTAATACTTTTAATTCCAATAAAAATGAAGCTCTGA
AAACGTTTATTAGAGATTTCTATCACAATCATTACTATTTTTTTCGACAG
TTGAGCGTCACAACACAATGCCGGCGAGTTTATCTAAACTGTGGTTCCAA
AGCAACGAAAATGGTGACGTCAACGATGGATTCCCGACATCAACGCCACG
ACAACGCCCAAGAAATAACGTGGTGGATAATTCTGGGCATAGCACCGATC
CTCGATCTGTGTCTGCATCATCGGGTTATCGAGGTAATCGATATCACACA
ATGAACGAACGAAATCGACATCCTCGTAATGATTTTTTCGATTATGCTCC
ACCTCGTTCGCATTCGGTCGAGCAACGAGAACATTCGGATCGACCGACGC
ATTTGAAAACTAAACGAGAACGCGATCAGCAACGATCGAAAAGTTTGAAG
GCGCGGAACGAATGCCATTATCGTGAGTCATCCATTGATTCTTCGTTTAA
CACCGAGACCAACTGGATCTTAAAGAAACCCAACGACAATCAACAACGTC
ACCAAAACACGTCTTATACGGCATCAAGTAGACGTCATGTCGGTGAAATA
TTCCCAACTGTTGGTGATGACGTCAGAAGCTTTGAGATGGATTCGTCGCC
ACATCGAAGTTATGCAGAACATGATCAAAACAATAACGCCAATAATTATT
CGCCATCCGGGTTGTTTCACGCCCAAAGTTTCAAAGTAAACCCAATACAT
CAAGAAGATCATACAAGCACTGGCTATCTTCAATATCAAAACGATTCCCC
TTTATCACATCGCCGTCATAAATCAGTGCCTGATCTCAGCAATGTCGACC
ATTATCGCAGTAGTAGTTTTTCAAGATCACCATCGTACAAAGATCATATT
GCAGCGCATAATCTAGATATTCAAGTTGCGCCGCAGAAACCCACAAGAGG
GAGACCGATGAAACTTTCAGACGACCAGAATAAATATACTATACAACTAG
GTAGCTCTTCTATGACTATTGAAAGTGTGACTGTACATAAACCTAGTCAA
ATTACCagagtttgaaaaggaagagAATCTTTTGTCATTGTATACAGTAT
ATACAAAAGCCATGTtggtttttttctttcacttttcacttgatttttca
ctattttcagcaatttaaaattaatttatttttgtagtattttagtaaat
tttcttatttttctagatatctattttgtatttatttatCGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008466XLOC_008466Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015105-exon-sc0000204-1491911889:259559..260271TCONS_00015105-exon-sc0000204-1491911889:259559..260271Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:259559..260271TCONS_00015105-exon-sc0000204-1510915933:259559..260271Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:259559..260271TCONS_00015105-exon-sc0000204-1575043694:259559..260271Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:260417..260471TCONS_00015105-exon-sc0000204-1491911889:260417..260471Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:260417..260471TCONS_00015105-exon-sc0000204-1510915933:260417..260471Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:260417..260471TCONS_00015105-exon-sc0000204-1575043694:260417..260471Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:261078..261184TCONS_00015105-exon-sc0000204-1491911889:261078..261184Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:261078..261184TCONS_00015105-exon-sc0000204-1510915933:261078..261184Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:261078..261184TCONS_00015105-exon-sc0000204-1575043694:261078..261184Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:266120..266267TCONS_00015105-exon-sc0000204-1491911889:266120..266267Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:266120..266267TCONS_00015105-exon-sc0000204-1510915933:266120..266267Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:266120..266267TCONS_00015105-exon-sc0000204-1575043694:266120..266267Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:266688..266754TCONS_00015105-exon-sc0000204-1491911889:266688..266754Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:266688..266754TCONS_00015105-exon-sc0000204-1510915933:266688..266754Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:266688..266754TCONS_00015105-exon-sc0000204-1575043694:266688..266754Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:268531..268616TCONS_00015105-exon-sc0000204-1491911889:268531..268616Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:268531..268616TCONS_00015105-exon-sc0000204-1510915933:268531..268616Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:268531..268616TCONS_00015105-exon-sc0000204-1575043694:268531..268616Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:269165..269256TCONS_00015105-exon-sc0000204-1491911889:269165..269256Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:269165..269256TCONS_00015105-exon-sc0000204-1510915933:269165..269256Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:269165..269256TCONS_00015105-exon-sc0000204-1575043694:269165..269256Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:269957..270054TCONS_00015105-exon-sc0000204-1491911889:269957..270054Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:269957..270054TCONS_00015105-exon-sc0000204-1510915933:269957..270054Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:269957..270054TCONS_00015105-exon-sc0000204-1575043694:269957..270054Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1491911889:270259..271402TCONS_00015105-exon-sc0000204-1491911889:270259..271402Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1510915933:270259..271402TCONS_00015105-exon-sc0000204-1510915933:270259..271402Clytia hemisphaericaexon
TCONS_00015105-exon-sc0000204-1575043694:270259..271402TCONS_00015105-exon-sc0000204-1575043694:270259..271402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:259559..271402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3686	14.5458	2.55415	2.28723	6.27489	2.80614	1.92977	2.8601	2.49126	1.61519	0.716736	0.908191	0.0101918	0.534025	0.650688	1.28922	1.73909	2.63469	0.12442	0.272407	2.19524	2.50995	6.62534	7.09203	0	0.461249	4.67168	4.19402	4.20296	3.74975
Blast
[Close]
BLAST of TCONS_00015105 vs. Swiss-Prot (Human)
Match: PDZD7 (PDZ domain-containing protein 7 OS=Homo sapiens GN=PDZD7 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.111e-20
Identity = 67/223 (30.04%), Postives = 116/223 (52.02%), Query Frame = 1 
Query:  436 INIEKV-SGNVGLFLCGKIESIPGLKVGYIDEGSIAHTKGVKKGDYIIEVNGKSMEKISLKTALAVLPLLTSLKLIIKRPEKI--IKTLSTSLNPWT-----KEKIYPTTTSASYTTVKSPSQQTIKLVRKSFKDSIGFSIRGGNEYLSPIYVSGVDKFSIAESSGLKVGDCILSINGKDCRGLNHHEAVQFIQNNSHLTFKVKRNNSKTRSISHQSSRYCTL 1080
            + +EK  +G +G  + G  E   G+ V  ++EGS A   G+  GD I EVNG S+E  ++ +A+ VL   + L ++++R  ++  IK  S     W      +  +    ++ S T+ +   ++ + L   S    +GF+IRGG E+   IYVS VD   +AE +G+KVGD +L+ NG     ++H +AV+ ++  +H+   +K    +  +     S YC L
Sbjct:   87 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGRVPGIK-FSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDGVRRIVHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQTHIMLTIK-ETGRYPAYKEMVSEYCWL 307
The following BLAST results are available for this feature:
BLAST of TCONS_00015105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDZD75.111e-2030.04PDZ domain-containing protein 7 OS=Homo sapiens GN... [more]
back to top