TCONS_00015092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015092
Unique NameTCONS_00015092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015092 ID=TCONS_00015092|Name=TCONS_00015092|organism=Clytia hemisphaerica|type=transcript|length=733bp
tttttattttttcattttgcctaaaatgctcagtcaatagttaaatttcc
taaaatttggtggtttttagtactcatgtactaaaatttttcttaaattt
cttgaagaccccacctaatttgggattttagtacacatggtactaaaatg
cttttaggctttttttgtaataccaccacgtaactaaaagtcatgatgtc
tgaaattttagtcccgacccccccccctgattagAGATGATTGTAATGGC
GTGTTTCCCAAGGAAAGTTAGGAATATTAATGTGTTGGATCAATTTTAAG
TAAATTTAACGTAGTGTCTAAATTTAGAATAGTATTTAACGTATGCCTAA
ATTTTTGTCGAAATGATCCATTGAATTTGAGATGACGTTATTgcataccc
ccccccccaaggaAAAATTTGGAGTATAgcgtttgaaataaaattttgaa
tagaGTTTTCACGTTTTGTCTAAATTGATAAAGTTAACATGAGATGATGT
CATTATGTATTTTTTAGGACAGGACAATGATGCTAATCAAATATGATTTC
GCACCACacgattgacagattaaagttcaaataataatgaaataattttc
ttaattacAGAATATCTAAAACCCCTCTGCTTCTGCAGAAGACTGGAATT
CCATGACTGGAATAACTACTGCCATTATTCGGCGATTGCTGTTCAAATCC
aatctttacaaaaaaaaataatttgatcttACA
Run BLAST on NCBI

transcript from alignment at sc0000203:327182..327914

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015092 ID=TCONS_00015092|Name=TCONS_00015092|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at sc0000203:327182..327914 (Clytia hemisphaerica)
TGTaagatcaaattatttttttttgtaaagattGGATTTGAACAGCAATC
GCCGAATAATGGCAGTAGTTATTCCAGTCATGGAATTCCAGTCTTCTGCA
GAAGCAGAGGGGTTTTAGATATTCTgtaattaagaaaattatttcattat
tatttgaactttaatctgtcaatcgtGTGGTGCGAAATCATATTTGATTA
GCATCATTGTCCTGTCCTAAAAAATACATAATGACATCATCTCATGTTAA
CTTTATCAATTTAGACAAAACGTGAAAACtctattcaaaattttatttca
aacgcTATACTCCAAATTTTtccttgggggggggggtatgcAATAACGTC
ATCTCAAATTCAATGGATCATTTCGACAAAAATTTAGGCATACGTTAAAT
ACTATTCTAAATTTAGACACTACGTTAAATTTACTTAAAATTGATCCAAC
ACATTAATATTCCTAACTTTCCTTGGGAAACACGCCATTACAATCATCTc
taatcaggggggggggtcgggactaaaatttcagacatcatgacttttag
ttacgtggtggtattacaaaaaaagcctaaaagcattttagtaccatgtg
tactaaaatcccaaattaggtggggtcttcaagaaatttaagaaaaattt
tagtacatgagtactaaaaaccaccaaattttaggaaatttaactattga
ctgagcattttaggcaaaatgaaaaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008454XLOC_008454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015092-exon-sc0000203-1491911889:327182..327914TCONS_00015092-exon-sc0000203-1491911889:327182..327914Clytia hemisphaericaexon
TCONS_00015092-exon-sc0000203-1510915933:327182..327914TCONS_00015092-exon-sc0000203-1510915933:327182..327914Clytia hemisphaericaexon
TCONS_00015092-exon-sc0000203-1575043694:327182..327914TCONS_00015092-exon-sc0000203-1575043694:327182..327914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:327182..327914 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.419472	0.205468	0.263627	0.255881	0.371241	0.220757	0.597148	0.0840076	0.645035	0.227001	0	0.144039	0.483099	0.190273	0.280947	0.0877608	0.113637	0.260477	0.220299	0.254742	0.386828	0.321789	0.0800305	0	0.626458	1.28471	0.684069	0.495395	0.337393	0.326647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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