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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015091 ID=TCONS_00015091|Name=TCONS_00015091|organism=Clytia hemisphaerica|type=transcript|length=2240bp
CATCACTATTGCTCCTTACATCATTTTCTCTAATACTTTTTCGCTTTCGA
CAGCCAGCCCCAAAAcactgttgttgtttttttcccaTCATAATCAACCA
GGTAAAACTTGAAgtgatttttcttgttttgctttgtttacattttttat
gttttgatttgtttataTCGTTCCCAGGTTGTCTCTCAGGATAAATTAAA
GCCGGTgtatttacaccgctattgagtagtgccactattagggtaccaat
ttcaaaaaaaactccgatcaaagattttggttggccgggattgagtagct
tggtccagggatatataaaggtcagtcgATGGTGGTTGTAATCAACCTTT
GAAAACCTTTTGATAACATCCTGGGCTGTGGGTTTATATTGCTCCAAAGC
AGGTAACGTGAAGCTACACAATCTGAAAAGAATGCGCAGGAATAAATGTA
CCGAGagaaaatagtttaaaaaattccaagatAAGATGGAATCGTAAAAT
CCGAATAGAAcaagaataaaagaaaattaCCGGTTGTAGGTTGCCCAACT
AACATCCAATAAGTATTTAGATTCATGTCAAATCCATCACGGATAGTAAC
TCTTGATCCTACTCTTGACAATAAAAAGTTGATTGTTGTTAAAATAGGTG
CAATAAAAAAAACGACAACTCAACTCaggttatattttcaaaatggcttT
GTGGATTTATGGCTTTGTGTCTGTAAtgagttgatgatttttaaatttta
aacgtAGGTAAAAGAGATTACCCTCATAATAGTTTTGATTCATAATTGGG
TATTCTATAATTTAGCccaaagattttttcagaacaTCTTGATGTTGTAT
AATGCTCCTCCACCACGTCTTTAATGAACATGTCCTTCTCATAAAACTTT
AACTTTGGTCGAGAGGCACAATCGAACcttcctggaaattcttcttctGA
TTTTCCAATAGTAACTTCCTTCAATTTTGTTTGGATATCCAAATCAGGGA
TATCATAGATGAAAAACTTATAACTCGTtaatttaaagaacattttttag
acAACTTGAGGCATCAAATATCTGGAGCCTGAACTGCTGTAAGTGATAGC
AAGGCCAAACAACCTTCCTAACATGATATGCTTGTGCCTTTTTAGCCTTT
CCATGTTATGGTGAAATGTGTACCCCTCACCTttccaaaaacaaataaaa
tatttcttaacatcttcaaaaaaaatagtaaaaaaactCCTTGAGAGCCT
GAACGGGGTTGGCCCCCTACTACTAATACTTGATAAGAACAAGGCATTAG
TTTTCGAATGTAACAatgagttttctttttttcacaaGACGTTGAACTGA
AGACCTTCCGATAGAAAGTTGTGGTGCAATCTGCCTGATGGAACTCTGAG
AACCGGGTTCTTCTTTTTGTGAACAAGTCAGTTCCTCGACCAAGTCACCA
TTTTCTGTACTTGCGGCTGTGATGCCACTGCCCTTTTTTTTGTTggtaga
tttttttatttatttttctaactttCCTGGGTCGTTACCCGtactgtttt
tttctatttatactTGTTATATATTGCACTATATCAAAGATGAAAATGGA
ACCCAAAAAGATGCACTGAAGAGCTAAcaccaaaaaaaagaaacaagaaa
ctgaaaagactctgaaaaataaataaaaagtaaaatctataaaatgtttt
ctgGGGTGAATATTTTCCCCCGTGATCCACGTAAACACCTTACAGTAGAA
CGTAAAAGTGAAAAGCAAATCAGTGTTCTCAATTTATTCGTCACGATTGA
CTGAGGAACCTCTCGCTTGTCGGCCAACAACTCTGATAATCGTTGATAGA
AACGAATGCATTCCACGCCCATTGCACATTTTGTCGGTAGATTCAGTCTC
CTTTATCTTCTTTAGTATACAGTATTGTGGATTGCTATCCGTGAGCATTT
AAATGAAGGATGTTCAGTCCAAATCTTATGAACATTCCAACCTTTCTCAA
TGAAGTCATTTTCGATTACGCCCTTTTGTTTCTCTGTCAGGATCATTTTA
ACGTTTACAGACCTTCCTCATCAGTATCAAgtttgaaatgatttttgagA
AGACGAACTTGCTAACGTCAACTTTACACTGCAATAGCTTCTGACGATAT
GCTGTCTTCTATTTTgcgatgaaattgaaaaaaagtctatGTTTGGATGT
CGAACGTAGAAGCATAAAATCTTTTTTGTGTCAGTTTTCT Run BLAST on NCBI transcript from alignment at sc0000203:324882..327121 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015091 ID=TCONS_00015091|Name=TCONS_00015091|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at sc0000203:324882..327121 (Clytia hemisphaerica)
AGAAAACTGACACAAAAAAGATTTTATGCTTCTACGTTCGACATCCAAAC
atagactttttttcaatttcatcgcAAAATAGAAGACAGCATATCGTCAG
AAGCTATTGCAGTGTAAAGTTGACGTTAGCAAGTTCGTCTTctcaaaaat
catttcaaacTTGATACTGATGAGGAAGGTCTGTAAACGTTAAAATGATC
CTGACAGAGAAACAAAAGGGCGTAATCGAAAATGACTTCATTGAGAAAGG
TTGGAATGTTCATAAGATTTGGACTGAACATCCTTCATTTAAATGCTCAC
GGATAGCAATCCACAATACTGTATACTAAAGAAGATAAAGGAGACTGAAT
CTACCGACAAAATGTGCAATGGGCGTGGAATGCATTCGTTTCTATCAACG
ATTATCAGAGTTGTTGGCCGACAAGCGAGAGGTTCCTCAGTCAATCGTGA
CGAATAAATTGAGAACACTGATTTGCTTTTCACTTTTACGTTCTACTGTA
AGGTGTTTACGTGGATCACGGGGGAAAATATTCACCCcagaaaacatttt
atagattttactttttatttatttttcagagtcttttcagtttcttgttt
cttttttttggtgTTAGCTCTTCAGTGCATCTTTTTGGGTTCCATTTTCA
TCTTTGATATAGTGCAATATATAACAagtataaatagaaaaaaacagtaC
GGGTAACGACCCAGGaaagttagaaaaataaataaaaaaatctaccAACA
AAAAAAAGGGCAGTGGCATCACAGCCGCAAGTACAGAAAATGGTGACTTG
GTCGAGGAACTGACTTGTTCACAAAAAGAAGAACCCGGTTCTCAGAGTTC
CATCAGGCAGATTGCACCACAACTTTCTATCGGAAGGTCTTCAGTTCAAC
GTCttgtgaaaaaaagaaaactcatTGTTACATTCGAAAACTAATGCCTT
GTTCTTATCAAGTATTAGTAGTAGGGGGCCAACCCCGTTCAGGCTCTCAA
GGagtttttttactattttttttgaagatgttaagaaatattttatttgt
ttttggaaAGGTGAGGGGTACACATTTCACCATAACATGGAAAGGCTAAA
AAGGCACAAGCATATCATGTTAGGAAGGTTGTTTGGCCTTGCTATCACTT
ACAGCAGTTCAGGCTCCAGATATTTGATGCCTCAAGTTgtctaaaaaatg
ttctttaaattaACGAGTTATAAGTTTTTCATCTATGATATCCCTGATTT
GGATATCCAAACAAAATTGAAGGAAGTTACTATTGGAAAATCagaagaag
aatttccaggaagGTTCGATTGTGCCTCTCGACCAAAGTTAAAGTTTTAT
GAGAAGGACATGTTCATTAAAGACGTGGTGGAGGAGCATTATACAACATC
AAGAtgttctgaaaaaatctttggGCTAAATTATAGAATACCCAATTATG
AATCAAAACTATTATGAGGGTAATCTCTTTTACCTacgtttaaaatttaa
aaatcatcaactcaTTACAGACACAAAGCCATAAATCCACAaagccattt
tgaaaatataacctGAGTTGAGTTGTCGTTTTTTTTATTGCACCTATTTT
AACAACAATCAACTTTTTATTGTCAAGAGTAGGATCAAGAGTTACTATCC
GTGATGGATTTGACATGAATCTAAATACTTATTGGATGTTAGTTGGGCAA
CCTACAACCGGtaattttcttttattcttgTTCTATTCGGATTTTACGAT
TCCATCTTatcttggaattttttaaactattttctCTCGGTACATTTATT
CCTGCGCATTCTTTTCAGATTGTGTAGCTTCACGTTACCTGCTTTGGAGC
AATATAAACCCACAGCCCAGGATGTTATCAAAAGGTTTTCAAAGGTTGAT
TACAACCACCATcgactgacctttatatatccctggaccaagctactcaa
tcccggccaaccaaaatctttgatcggagttttttttgaaattggtaccc
taatagtggcactactcaatagcggtgtaaatacACCGGCTTTAATTTAT
CCTGAGAGACAACCTGGGAACGAtataaacaaatcaaaacataaaaaatg
taaacaaagcaaaacaagaaaaatcacTTCAAGTTTTACCTGGTTGATTA
TGAtgggaaaaaaacaacaacagtgTTTTGGGGCTGGCTGTCGAAAGCGA
AAAAGTATTAGAGAAAATGATGTAAGGAGCAATAGTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015091-exon-sc0000203-1491911889:324882..327121 | TCONS_00015091-exon-sc0000203-1491911889:324882..327121 | Clytia hemisphaerica | exon |
| TCONS_00015091-exon-sc0000203-1510915933:324882..327121 | TCONS_00015091-exon-sc0000203-1510915933:324882..327121 | Clytia hemisphaerica | exon |
| TCONS_00015091-exon-sc0000203-1575043694:324882..327121 | TCONS_00015091-exon-sc0000203-1575043694:324882..327121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:324882..327121 . |
Blast
The following BLAST results are available for this feature:
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