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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015084 ID=TCONS_00015084|Name=TCONS_00015084|organism=Clytia hemisphaerica|type=transcript|length=1050bp
agaaaatacatcaacaatttcataattcttATACTAGTAGGCTACGCGTC
CAGCGctgatttttaacaaattttcacAGAGGTGAAATCTAATTCCTACT
AGGCAAGTTTTGGGGTTTTCTATCGCATACCAAACTTATTACAATAAGAA
TTTGACGATTTCTTGACAAAAATTCGTCAAATTTAATCCCAgccaaaatt
cattattttaagATAATNCATCCAAAAGAACGCCCACAATGAAAGATTAT
CACTTATGCAATGGGAGACCCTATCAGCAACAATTGCAAACACAATCAAC
AACCTTCCATTGGCAGTCGGTAATATCACCGGAGACTTTGAAGTGATGGA
TTTGATTACGCCAAACCGATTGCTGCTTGGGCGGAATAACGATCGCAACC
CTGATGGCATCATGATCACAACTCAAAATCCTTCAAAAGTCATGAAGGAA
AATGAGAAGATATACGAAGCATGGTTTGAAGCATGGCTTATGGTCCATGT
CCCTAAACTCATGCACCAAACGAAATGGTTTAAAAGCGATTCAATCAACG
TTGGTGACATCATCATCTTTCAAAAGGTAGATTCTGTAATCTGCAAAACT
TACACGTATGGTCAAGTTGTTGAACTTGACTACTCAACTGACGGTATGCC
GAGGAAAGCAACAATCAGGTATCAAAACCCAAACGAAAACGTATTTCGGA
CGACACATCGGGCCGTGCGTGGCTTAATCATTATCCATCGAGCAGACGAT
TCGGATGTAATGACTGGGCTTGGCAAAGTGGCTAAAGATATTGATTTAAA
TTTGAGATAAATGATTTTCCCTTTTGGGGGGAGTGTAAAATGAACTGAGT
TAATGATAAAATTAACTCCTATTTCTGgtttgaaaaagagaaaataattt
attttgttagAATTTAATTTATAGAAAATTTCACTTGTTCCTAGTTACTT
CTTATagaaaatctatgaaaaatcacacaaaacactttattttatttata
agcacattttttcttataaaatgatGTTCTTAACATAGTGTTATGCTTAT Run BLAST on NCBI protein sequence of TCONS_00015084-protein >TCONS_00015084-protein ID=TCONS_00015084-protein|Name=TCONS_00015084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MQWETLSATIANTINNLPLAVGNITGDFEVMDLITPNRLLLGRNNDRNPD
GIMITTQNPSKVMKENEKIYEAWFEAWLMVHVPKLMHQTKWFKSDSINVG
DIIIFQKVDSVICKTYTYGQVVELDYSTDGMPRKATIRYQNPNENVFRTT
HRAVRGLIIIHRADDSDVMTGLGKVAKDIDLNLR Run BLAST on NCBI transcript from alignment at sc0000203:159144..160193 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015084 ID=TCONS_00015084|Name=TCONS_00015084|organism=Clytia hemisphaerica|type=transcript|length=1050bp|location=Sequence derived from alignment at sc0000203:159144..160193 (Clytia hemisphaerica)
ATAAGCATAACACTATGTTAAGAACatcattttataagaaaaaatgtgct
tataaataaaataaagtgttttgtgtgatttttcatagattttctATAAG
AAGTAACTAGGAACAAGTGAAATTTTCTATAAATTAAATTctaacaaaat
aaattattttctctttttcaaacCAGAAATAGGAGTTAATTTTATCATTA
ACTCAGTTCATTTTACACTCCCCCCAAAAGGGAAAATCATTTATCTCAAA
TTTAAATCAATATCTTTAGCCACTTTGCCAAGCCCAGTCATTACATCCGA
ATCGTCTGCTCGATGGATAATGATTAAGCCACGCACGGCCCGATGTGTCG
TCCGAAATACGTTTTCGTTTGGGTTTTGATACCTGATTGTTGCTTTCCTC
GGCATACCGTCAGTTGAGTAGTCAAGTTCAACAACTTGACCATACGTGTA
AGTTTTGCAGATTACAGAATCTACCTTTTGAAAGATGATGATGTCACCAA
CGTTGATTGAATCGCTTTTAAACCATTTCGTTTGGTGCATGAGTTTAGGG
ACATGGACCATAAGCCATGCTTCAAACCATGCTTCGTATATCTTCTCATT
TTCCTTCATGACTTTTGAAGGATTTTGAGTTGTGATCATGATGCCATCAG
GGTTGCGATCGTTATTCCGCCCAAGCAGCAATCGGTTTGGCGTAATCAAA
TCCATCACTTCAAAGTCTCCGGTGATATTACCGACTGCCAATGGAAGGTT
GTTGATTGTGTTTGCAATTGTTGCTGATAGGGTCTCCCATTGCATAAGTG
ATAATCTTTCATTGTGGGCGTTCTTTTGGATGNATTATcttaaaataatg
aattttggcTGGGATTAAATTTGACGAATTTTTGTCAAGAAATCGTCAAA
TTCTTATTGTAATAAGTTTGGTATGCGATAGAAAACCCCAAAACTTGCCT
AGTAGGAATTAGATTTCACCTCTgtgaaaatttgttaaaaatcagCGCTG
GACGCGTAGCCTACTAGTATaagaattatgaaattgttgatgtattttct
Coding sequence (CDS) from alignment at sc0000203:159144..160193 >TCONS_00015084 ID=TCONS_00015084|Name=TCONS_00015084|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000203:159144..160193 (Clytia hemisphaerica)
TTATCTCAAATTTAAATCAATATCTTTAGCCACTTTGCCAAGCCCAGTCA
TTACATCCGAATCGTCTGCTCGATGGATAATGATTAAGCCACGCACGGCC
CGATGTGTCGTCCGAAATACGTTTTCGTTTGGGTTTTGATACCTGATTGT
TGCTTTCCTCGGCATACCGTCAGTTGAGTAGTCAAGTTCAACAACTTGAC
CATACGTGTAAGTTTTGCAGATTACAGAATCTACCTTTTGAAAGATGATG
ATGTCACCAACGTTGATTGAATCGCTTTTAAACCATTTCGTTTGGTGCAT
GAGTTTAGGGACATGGACCATAAGCCATGCTTCAAACCATGCTTCGTATA
TCTTCTCATTTTCCTTCATGACTTTTGAAGGATTTTGAGTTGTGATCATG
ATGCCATCAGGGTTGCGATCGTTATTCCGCCCAAGCAGCAATCGGTTTGG
CGTAATCAAATCCATCACTTCAAAGTCTCCGGTGATATTACCGACTGCCA
ATGGAAGGTTGTTGATTGTGTTTGCAATTGTTGCTGATAGGGTCTCCCAT
TGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015084-exon-sc0000203-1491911889:159144..160193 | TCONS_00015084-exon-sc0000203-1491911889:159144..160193 | Clytia hemisphaerica | exon |
| TCONS_00015084-exon-sc0000203-1510915933:159144..160193 | TCONS_00015084-exon-sc0000203-1510915933:159144..160193 | Clytia hemisphaerica | exon |
| TCONS_00015084-exon-sc0000203-1575043694:159144..160193 | TCONS_00015084-exon-sc0000203-1575043694:159144..160193 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:159144..160193 . |
Blast
The following BLAST results are available for this feature:
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