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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015071 ID=TCONS_00015071|Name=TCONS_00015071|organism=Clytia hemisphaerica|type=transcript|length=693bp
CTTATTTATAAACGGGTAATGTTCTTTTCCCTCATATGCAGTAGTCGTGA
GCAAGATTGTATTGAGTGAGCCTTGCAAAATGAACCTTTTTGTTATTGTC
TTATTTTCGTTCACTTTGGCGCTTCATTTGTTCATACTTGAAGCCACGCA
TTATTCAATAATCGCATTGCTCGGCCGCCCGACATCATGGGAGGCCGAAT
ACCGTTTAGAAGTGGATTACGATACATGTTGTCAGGAAATGTGTAGAGCC
AACGAGTCGTGTAAATCGTACGATCAAATATGGCAGCCGAGTCGTGATAT
CTACGAATGCTGTTTTtacagtaaaaattatcaagtCTTAAAAGTGGAAG
GGGAGAAATTGAAGCTGATCTCGAGAGTGCAATATTACTCTAAGATGTAT
AAAGGCCTTACAGGATGTTTGGAATGGTGGGAGTCGGCTGGGGCAAGAAA
GAAAGGGGAATACCCCCTTGAAGACGGCAGTATGAGAGGgtgtttcaatt
tcaaatcaTGCCAACAAGTTTACGACAGAAATTATTTGAAATCTGGAGAA
GACTGGTACGAAATCAACGTTGAAGGAGTGATGGTTCGACAATTATGTAA
AATCTACGATGAAAAAGGATGGAcagtttttcagaaaagattaaaTCCAC
TCAAatatcaatttcataaaaaaacttgGCAGCAATACACAGA Run BLAST on NCBI protein sequence of TCONS_00015071-protein >TCONS_00015071-protein ID=TCONS_00015071-protein|Name=TCONS_00015071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNLFVIVLFSFTLALHLFILEATHYSIIALLGRPTSWEAEYRLEVDYDTC
CQEMCRANESCKSYDQIWQPSRDIYECCFYSKNYQVLKVEGEKLKLISRV
QYYSKMYKGLTGCLEWWESAGARKKGEYPLEDGSMRGCFNFKSCQQVYDR
NYLKSGEDWYEINVEGVMVRQLCKIYDEKGWTVFQKRLNPLKYQFHKKTW
QQYT Run BLAST on NCBI transcript from alignment at sc0000203:449569..450419- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015071 ID=TCONS_00015071|Name=TCONS_00015071|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000203:449569..450419- (Clytia hemisphaerica)
CTTATTTATAAACGGGTAATGTTCTTTTCCCTCATATGCAGTAGTCGTGA
GCAAGATTGTATTGAGTGAGCCTTGCAAAATGAACCTTTTTGTTATTGTC
TTATTTTCGTTCACTTTGGCGCTTCATTTGTTCATACTTGAAGCCACGCA
TTATTCAATAATCGCATTGCTCGGCCGCCCGACATCATGGGAGGCCGAAT
ACCGTTTAGAAGTGGATTACGATACATGTTGTCAGGAAATGTGTAGAGCC
AACGAGTCGTGTAAATCGTACGATCAAATATGGCAGCCGAGTCGTGATAT
CTACGAATGCTGTTTTTACAGTAAAAATTATCAAGTCTTAAAAGTGGAAG
GGGAGAAATTGAAGCTGATCTCGAGAGTGCAATATTACTCTAAGATGTAT
AAAGGCCTTACAGGATGTTTGGAATGGTGGGAGTCGGCTGGGGCAAGAAA
GAAAGGGGAATACCCCCTTGAAGACGGCAGTATGAGAGGGTGTTTCAATT
TCAAATCATGCCAACAAGTTTACGACAGAAATTATTTGAAATCTGGAGAA
GACTGGTACGAAATCAACGTTGAAGGTCAGGCTTTTATTCATTTTTAATG
TTTTGCTATCTATACAGAATTAAGAAATCATTCGCTATTAAATTCTATTG
CATTTTAAATAATTTCATTTACGGTTCTATACTTTTACAGGCGGTTAGGA
GACAAAAATATTATTCTCGCATTTTTCTTGCAGGAGTGATGGTTCGACAA
TTATGTAAAATCTACGATGAAAAAGGATGGACAGTTTTTCAGAAAAGATT
AAATCCACTCAAATATCAATTTCATAAAAAAACTTGGCAGCAATACACAG
A Coding sequence (CDS) from alignment at sc0000203:449569..450419- >TCONS_00015071 ID=TCONS_00015071|Name=TCONS_00015071|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000203:449569..450419- (Clytia hemisphaerica)
GAGTGATGGTTCGACAATTATGTAAAATCTACGATGAAAAAGGATGGACA
GTTTTTCAGAAAAGATTAAATCCACTCAAATATCAATTTCATAAAAAAAC
TTGGCAGCAATACACAATGAACCTTTTTGTTATTGTCTTATTTTCGTTCA
CTTTGGCGCTTCATTTGTTCATACTTGAAGCCACGCATTATTCAATAATC
GCATTGCTCGGCCGCCCGACATCATGGGAGGCCGAATACCGTTTAGAAGT
GGATTACGATACATGTTGTCAGGAAATGTGTAGAGCCAACGAGTCGTGTA
AATCGTACGATCAAATATGGCAGCCGAGTCGTGATATCTACGAATGCTGT
TTTTACAGTAAAAATTATCAAGTCTTAAAAGTGGAAGGGGAGAAATTGAA
GCTGATCTCGAGAGTGCAATATTACTCTAAGATGTATAAAGGCCTTACAG
GATGTTTGGAATGGTGGGAGTCGGCTGGGGCAAGAAAGAAAGGGGAATAC
CCCCTTGAAGACGGCAGTATGAGAGGGTGTTTCAATTTCAAATCATGCCA
ACAAGTTTACGACAGAAATTATTTGAAATCTGGAGAAGACTGGTACGAAA
TCAACGTTGAAGGAGTGATGGTTCGACAATTATGTAAAATCTACGATGAA
AAAGGATGGACAGTTTTTCAGAAAAGATTAAATCCACTCAAATATCAATT
TCATAAAAAAACTTGGCAGCAATACACAATGAACCTTTTTGTTATTGTCT
TATTTTCGTTCACTTTGGCGCTTCATTTGTTCATACTTGAAGCCACGCAT
TATTCAATAATCGCATTGCTCGGCCGCCCGACATCATGGGAGGCCGAATA
CCGTTTAGAAGTGGATTACGATACATGTTGTCAGGAAATGTGTAGAGCCA
ACGAGTCGTGTAAATCGTACGATCAAATATGGCAGCCGAGTCGTGATATC
TACGAATGCTGTTTTTACAGTAAAAATTATCAAGTCTTAAAAGTGGAAGG
GGAGAAATTGAAGCTGATCTCGAGAGTGCAATATTACTCTAAGATGTATA
AAGGCCTTACAGGATGTTTGGAATGGTGGGAGTCGGCTGGGGCAAGAAAG
AAAGGGGAATACCCCCTTGAAGACGGCAGTATGAGAGGGTGTTTCAATTT
CAAATCATGCCAACAAGTTTACGACAGAAATTATTTGAAATCTGGAGAAG
ACTGGTACGAAATCAACGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015071-exon-sc0000203-1575043694:449845..450419 | TCONS_00015071-exon-sc0000203-1575043694:449845..450419 | Clytia hemisphaerica | exon |
| TCONS_00015071-exon-sc0000203-1575043694:449569..449686 | TCONS_00015071-exon-sc0000203-1575043694:449569..449686 | Clytia hemisphaerica | exon |
| TCONS_00015071-exon-sc0000203-1510915933:449845..450419 | TCONS_00015071-exon-sc0000203-1510915933:449845..450419 | Clytia hemisphaerica | exon |
| TCONS_00015071-exon-sc0000203-1510915933:449569..449686 | TCONS_00015071-exon-sc0000203-1510915933:449569..449686 | Clytia hemisphaerica | exon |
| TCONS_00015071-exon-sc0000203-1491911889:449845..450419 | TCONS_00015071-exon-sc0000203-1491911889:449845..450419 | Clytia hemisphaerica | exon |
| TCONS_00015071-exon-sc0000203-1491911889:449569..449686 | TCONS_00015071-exon-sc0000203-1491911889:449569..449686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:449569..450419 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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