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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015068 ID=TCONS_00015068|Name=TCONS_00015068|organism=Clytia hemisphaerica|type=transcript|length=1607bpRun BLAST on NCBI protein sequence of TCONS_00015068-protein >TCONS_00015068-protein ID=TCONS_00015068-protein|Name=TCONS_00015068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp MADKDYDSSDDEEKTIADDIVVTKYNMAAKIANEVLKKVAEACKEGASARRun BLAST on NCBI transcript from alignment at sc0000203:376881..390125- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015068 ID=TCONS_00015068|Name=TCONS_00015068|organism=Clytia hemisphaerica|type=transcript|length=13245bp|location=Sequence derived from alignment at sc0000203:376881..390125- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000203:376881..390125- >TCONS_00015068 ID=TCONS_00015068|Name=TCONS_00015068|organism=Clytia hemisphaerica|type=CDS|length=15717bp|location=Sequence derived from alignment at sc0000203:376881..390125- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015068 vs. Swiss-Prot (Human)
Match: PA2G4 (Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3) HSP 1 Score: 442.195 bits (1136), Expect = 6.093e-151 Identity = 210/341 (61.58%), Postives = 260/341 (76.25%), Query Frame = 3
Query: 216 TIADDIVVTKYNMAAKIANEVLKKVAEACKEGASARETCELGDKTILDETNKIYRKDKEIKKGIGFPTCISINDVIGHFSPLASEGDTTMKDGDLVKIDLGVHVDGFIAIVAHTVVIGASTDKKVTGRKADVLLAAHYATEAAYRLVKPGNSNEDVTEAVTKIAEQFKCKPVEGMLSHQLQQDIIDGEKTIIQNPSEAQKKDHSKVEFELHEVYGVDVYISTGDGKSKERDVRTTVYKK-SDQTYALKMKASRTFFSEASNKFGSMPFTLRAFEDEKKARLGIGECVNHELMIPYQVLYEKDGEYVAQFKFTVLLMPTGSLRITNGSFDVNVAESEHSIVD 1235
TIA+D+VVTKY M IAN VL+ + EA G S CE GD I++ET KI++K+KE+KKGI FPT IS+N+ + HFSPL S+ D +K+GDLVKIDLGVHVDGFIA VAHT V+ + +VTGRKADV+ AAH EAA RLVKPGN N VTEA K+A F C P+EGMLSHQL+Q +IDGEKTIIQNP++ QKKDH K EFE+HEVY VDV +S+G+GK+K+ RTT+YK+ + Y LKMK SR FFSE +F +MPFTLRAFEDEKKAR+G+ EC HEL+ P+ VLYEK+GE+VAQFKFTVLLMP G +RIT+G F+ ++ +SE + D
Sbjct: 11 TIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQD 351 The following BLAST results are available for this feature:
BLAST of TCONS_00015068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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