TCONS_00015055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015055
Unique NameTCONS_00015055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015055 ID=TCONS_00015055|Name=TCONS_00015055|organism=Clytia hemisphaerica|type=transcript|length=3526bp
CTCGCGTTATAAGtagttgtaatttttttctcttattgaAGAGGCATAAG
AGGTCTTGAGAACAGGAAATGAAAAGAATTCAGTACTACGTCTCTCTATG
TCATTTTTCGAGTTGTTTTGGAACTATTCGTTTGTCTTGCACTATGATGA
AAACATGTACTGTAGTGTGTGGGAAAGGTCATGTGAAGTTATGTTGTTAG
GTTTGTATTCTATTCGTCATGAACTTTTTAGACACATTCTAACGGAACTA
GGTACTCAAtcatgtttgtttttctttagtGTATTTCATTTTGTGGAGAA
TCTTATTATCCTTGAAGAACTCTTCTATGTTCTCTGCCTTGGTAATAAAG
TTGTGGCCGACCGTAGGGGTGGAAAATCTCATGTTTGNCCTTGGTAATAA
AGTTGTGGCCGACCGTGGGGGTGGAAAATCTCATGTTTAGTTTGTTGTCT
ATAATTTTTTTAGTTGCCAGTTAGCACGCCCAGTTGAATGCGTGCATAAA
TAGATGCCATCTTTCTTGGGGATGGACATGGATAATGGATATTAGTTTTG
ATAAAagataagaatattttcaattttgaagaagTAAATTTTCAAAGACG
TTGAATTGCACAAAAGAGACACCTTTTTCATAAGGATGCCGTTTTGTTTT
GCTTGTAGTCTAGGTTGTTAACGTTTTATTACTAAACCTTCATTTTGACA
TTCGTGGCTTTTTTCGCGGTTAAGGATTAGAGCTACGATGGGCGGAAGTT
GATAATGCTTTAATACTTCCGTTACGCAACTGCAGTTTTGAAACTTGTGG
TTGGAAAGATCTTTTGTGTGCTCTTGTTTTCGATTATGATAGTTTCAGTA
AATAATGATTAATTAATTAAGAGTTTAATTATGATGACTTTATTGGACAT
TTCCAGAGAGTTATTTTAGAAACTGAACACATGTAGTAATAACGGCAGAC
GACGGCTGATCTTTACTTTCACGCAAAAATGGGGAAAATCTATAACATTT
TTCATCATTCTGATTCTAAGTTTTTGTTATTTCGCGTAGAAACTGACCCT
AGTATTTGTGGGGTTTAAAAATAGTGAGACACACACTAGGAAAACAAATT
TGTGCCAGTTTTGGAGAGATTGACTTATAGaagcttgttttaaataatgG
TCAATTTATGGAGACTGTAATgttactcttgggtacctaatattcgggga
ggggggttggaaaattttcgaaaaattaattagcggggtgGACGGCTATT
AGAAACCCGAGAGTGGTAGTTTTCATGACACAATGTTACTGAATTGACAC
ACACAAAACATAATATCTTAATCAAAACATCAAAGGAAAGGTTTAATGAC
TTTGACATTTTCGACGTAATACAGCTTGTCTTTTTGACAGATGAGATGCT
GTAATGTTCAAATAAAATGCCGTAACATCTGCCTTTTCATGTTTGTTCAC
GTATACGGTTTGAATACATAAGTCACCTGTCATTTATGAGAAATCATATA
ATTTGAATGTTGTTTTATACATATGTGAGGTGCCATTTAAGATGACATTG
TTTATTTGATTGTCAACCTTGAAGGGTGGCTTACTTACCACTCTAACTTT
ATTTGTTGCGAATAAGTTTATATGATTGTGACTTTTTTTAGAAACGTTCA
ACCTGCTTTTACCTCTAGTTTAACCAACGGATAGCGATTTTCTCAAAGCT
TTTAGTATAAACTCAAGGCTTTAGCCTCTCCACTTTCACTTTAGTATCCC
TGGATTTCAAtcattttataaatataaatattcttctcgttttagaaaat
caaagattgTTTGGATTTTAACTTGAAAAAGATGCGTAAGAAAAGCGTCA
GTTGCGTCAATTTACGCCGGAGATTCGACAGCAAGAACAATTCGTGTCAT
AATAACACCAATCAAAAATACGACAAAGTAAATAGCGAAATATTtatatg
tacaaagaaaattgatgatGGAATTTTACCGTTGTTAGAGAGTGCTGGCT
CCTTATCTAGCTTTAATAGTTTCACACCTGCAACGGAAGAAAGCTTTTTA
TTGGAGAGCTCGGATGAGGCGCCAAATACGAATAAATCATCGGATTATGA
GAACTGTAACAAACGTCGAACCAGGGGTAAAATAAGATGTCTAAAACACC
GTCCGCACTCATTATCTTTATCCGAACGGAATTTGACAACCCGATTACAA
GAGAACGTTAAACCCGATTCGGAATCAAGCAAAGACAATAATTCATCTTT
ATGCAAATCGAAAACAAATCTTACAAAGTGTTCGCATAATACTGAAGATG
CGCATTGTTGTGGGCAgcaaaaacacaagaaatctTTGAAATCGAACGAA
TTGATAGACTCGCCTACCCAAGagaataataacaataatgatACCATTAA
CGAAGAAGCACAGATTTCTTTCAGTAAAGAACAACGCAGACGTTTAAAAC
AGAAAATGAGACAGCGACAGAAGTTTCAGGATAAATCGGTTTTCCTTGGT
CTTTTTTAAACGCGTGCCTATTCTACATCTATTGCAGatcgttttatttt
ttatatatacgCAGTTCTTTGgtttcatacattttctttttgataacaTA
CGATGGTGAATTTTAATCCGCCACAGAACACGACGTACGTTTTACCCCGT
TTATATATCatgatattttcttttgatgCTATATAATAGTTGTTATATAA
AATCTTTGACTCGAAGCTTAGAACCAAATATCATTTTACCAAAGTCTCTT
CTGTCGATTGGTTAAATCTCGAAATTTCCTTTCTTTTCGATTATATTCAT
ACGTTTTCGTGTCCTCAAATTCTAATTCTACTGATTGAGAAGACTCATTA
TCGTACAacagcataaaatttctaacCCCCTTGAATTATGTTGTTTATTC
GCAATTGTTAACTCAAGATTATGTCATCTTTCCTGtatgaaatacacgtt
tttttttataagagcatccaaaaattttgtttaaacTCTTCGgatctttt
tcagttttaagccaaaaaatattcttaacatgttcttattttcaccattt
tgtgaccatttttacccattttcctaagaaatcgggtgttttcgagtccg
taaagccttaaaatgttcttaacttgttcttaacatttttgcgaCCGAAG
CCTTTTTTCATATACggtttgttcttatttaaaaaaaaaaacgtgtacct
aaAATACCTGGATAATATTTCCTTTTCGAGATGAGAAGAATGACTTGTTT
TGACTTACCCAAATTTCAATTTATAGGCTAtacatattttatatttttta
cctgCTTTATTAAGAAGTGTTTTTACCTCgagatttgaaatatttatgtT
TGATTATAcgttatatattattttttttggaaaatttcttttgacaCTAA
AACTTTCATGATTGAATTCTCTAGCCAATTCATATACAATTACAAAATTT
CGAAAGGCTTATATACTTTTAAACTGATAGCCTTTGTACATGATTTTATT
AAGATTGCTTATGTAAAAGATTTAGG
Run BLAST on NCBI

transcript from alignment at sc0000203:251631..255220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015055 ID=TCONS_00015055|Name=TCONS_00015055|organism=Clytia hemisphaerica|type=transcript|length=3590bp|location=Sequence derived from alignment at sc0000203:251631..255220- (Clytia hemisphaerica)
CTCGCGTTATAAGTAGTTGTAATTTTTTTCTCTTATTGAAGAGGCATAAG
AGGTCTTGAGAACAGGAAATGAAAAGAATTCAGTACTACGTCTCTCTATG
TCATTTTTCGAGTTGTTTTGGAACTATTCGTTTGTCTTGCACTATGATGA
AAACATGTACTGTAGTGTGTGGGAAAGGTCATGTGAAGTTATGTTGTTAG
GTTTGTATTCTATTCGTCATGAACTTTTTAGACACATTCTAACGGAACTA
GGTACTCAATCATGTTTGTTTTTCTTTAGTGTATTTCATTTTGTGGAGAA
TCTTATTATCCTTGAAGAACTCTTCTATGTTCTCTGCCTTGGTAATAAAG
TTGTGGCCGACCGTAGGGGTGGAAAATCTCATGTTTGNCCTTGGTAATAA
AGTTGTGGCCGACCGTGGGGGTGGAAAATCTCATGTTTAGTTTGTTGTCT
ATAATTTTTTTAGTTGCCAGTTAGCACGCCCAGTTGAATGCGTGCATAAA
TAGATGCCATCTTTCTTGGGGATGGACATGGATAATGGATATTAGTTTTG
ATAAAAGATAAGAATATTTTCAATTTTGAAGAAGTAAATTTTCAAAGACG
TTGAATTGCACAAAAGAGACACCTTTTTCATAAGGATGCCGTTTTGTTTT
GCTTGTAGTCTAGGTTGTTAACGTTTTATTACTAAACCTTCATTTTGACA
TTCGTGGCTTTTTTCGCGGTTAAGGATTAGAGCTACGATGGGCGGAAGTT
GATAATGCTTTAATACTTCCGTTACGCAACTGCAGTTTTGAAACTTGTGG
TTGGAAAGATCTTTTGTGTGCTCTTGTTTTCGATTATGATAGTTTCAGTA
AATAATGATTAATTAATTAAGAGTTTAATTATGATGACTTTATTGGACAT
TTCCAGAGAGTTATTTTAGAAACTGAACACATGTAGTAATAACGGCAGAC
GACGGCTGATCTTTACTTTCACGCAAAAATGGGGAAAATCTATAACATTT
TTCATCATTCTGATTCTAAGTTTTTGTTATTTCGCGTAGAAACTGACCCT
AGTATTTGTGGGGTTTAAAAATAGTGAGACACACACTAGGAAAACAAATT
TGTGCCAGTTTTGGAGAGATTGACTTATAGAAGCTTGTTTTAAATAATGG
TCAATTTATGGAGACTGTAATGTTACTCTTGGGTACCTAATATTCGGGGA
GGGGGGTTGGAAAATTTTCGAAAAATTAATTAGCGGGGTGGACGGCTATT
AGAAACCCGAGAGTGGTAGTTTTCATGACACAATGTTACTGAATTGACAC
ACACAAAACATAATATCTTAATCAAAACATCAAAGGAAAGGTTTAATGAC
TTTGACATTTTCGACGTAATACAGCNATATCTTAATCAAAACATCAAACG
AAAGGTTTAATGACTTTGACATTTTCGACGTAATACAGCTTGTCTTTTTG
ACAGATGAGATGCTGTAATGTTCAAATAAAATGCCGTAACATCTGCCTTT
TCATGTTTGTTCACGTATACGGTTTGAATACATAAGTCACCTGTCATTTA
TGAGAAATCATATAATTTGAATGTTGTTTTATACATATGTGAGGTGCCAT
TTAAGATGACATTGTTTATTTGATTGTCAACCTTGAAGGGTGGCTTACTT
ACCACTCTAACTTTATTTGTTGCGAATAAGTTTATATGATTGTGACTTTT
TTTAGAAACGTTCAACCTGCTTTTACCTCTAGTTTAACCAACGGATAGCG
ATTTTCTCAAAGCTTTTAGTATAAACTCAAGGCTTTAGCCTCTCCACTTT
CACTTTAGTATCCCTGGATTTCAATCATTTTATAAATATAAATATTCTTC
TCGTTTTAGAAAATCAAAGATTGTTTGGATTTTAACTTGAAAAAGATGCG
TAAGAAAAGCGTCAGTTGCGTCAATTTACGCCGGAGATTCGACAGCAAGA
ACAATTCGTGTCATAATAACACCAATCAAAAATACGACAAAGTAAATAGC
GAAATATTTATATGTACAAAGAAAATTGATGATGGAATTTTACCGTTGTT
AGAGAGTGCTGGCTCCTTATCTAGCTTTAATAGTTTCACACCTGCAACGG
AAGAAAGCTTTTTATTGGAGAGCTCGGATGAGGCGCCAAATACGAATAAA
TCATCGGATTATGAGAACTGTAACAAACGTCGAACCAGGGGTAAAATAAG
ATGTCTAAAACACCGTCCGCACTCATTATCTTTATCCGAACGGAATTTGA
CAACCCGATTACAAGAGAACGTTAAACCCGATTCGGAATCAAGCAAAGAC
AATAATTCATCTTTATGCAAATCGAAAACAAATCTTACAAAGTGTTCGCA
TAATACTGAAGATGCGCATTGTTGTGGGCAGCAAAAACACAAGAAATCTT
TGAAATCGAACGAATTGATAGACTCGCCTACCCAAGAGAATAATAACAAT
AATGATACCATTAACGAAGAAGCACAGATTTCTTTCAGTAAAGAACAACG
CAGACGTTTAAAACAGAAAATGAGACAGCGACAGAAGTTTCAGGATAAAT
CGGTTTTCCTTGGTCTTTTTTAAACGCGTGCCTATTCTACATCTATTGCA
GATCGTTTTATTTTTTATATATACGCAGTTCTTTGGTTTCATACATTTTC
TTTTTGATAACATACGATGGTGAATTTTAATCCGCCACAGAACACGACGT
ACGTTTTACCCCGTTTATATATCATGATATTTTCTTTTGATGCTATATAA
TAGTTGTTATATAAAATCTTTGACTCGAAGCTTAGAACCAAATATCATTT
TACCAAAGTCTCTTCTGTCGATTGGTTAAATCTCGAAATTTCCTTTCTTT
TCGATTATATTCATACGTTTTCGTGTCCTCAAATTCTAATTCTACTGATT
GAGAAGACTCATTATCGTACAACAGCATAAAATTTCTAACCCCCTTGAAT
TATGTTGTTTATTCGCAATTGTTAACTCAAGATTATGTCATCTTTCCTGT
ATGAAATACACGTTTTTTTTTATAAGAGCATCCAAAAATTTTGTTTAAAC
TCTTCGGATCTTTTTCAGTTTTAAGCCAAAAAATATTCTTAACATGTTCT
TATTTTCACCATTTTGTGACCATTTTTACCCATTTTCCTAAGAAATCGGG
TGTTTTCGAGTCCGTAAAGCCTTAAAATGTTCTTAACTTGTTCTTAACAT
TTTTGCGACCGAAGCCTTTTTTCATATACGGTTTGTTCTTATTTAAAAAA
AAAAACGTGTACCTAAAATACCTGGATAATATTTCCTTTTCGAGATGAGA
AGAATGACTTGTTTTGACTTACCCAAATTTCAATTTATAGGCTATACATA
TTTTATATTTTTTACCTGCTTTATTAAGAAGTGTTTTTACCTCGAGATTT
GAAATATTTATGTTTGATTATACGTTATATATTATTTTTTTTGGAAAATT
TCTTTTGACACTAAAACTTTCATGATTGAATTCTCTAGCCAATTCATATA
CAATTACAAAATTTCGAAAGGCTTATATACTTTTAAACTGATAGCCTTTG
TACATGATTTTATTAAGATTGCTTATGTAAAAGATTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008425XLOC_008425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015055-exon-sc0000203-1575043694:253865..255220TCONS_00015055-exon-sc0000203-1575043694:253865..255220Clytia hemisphaericaexon
TCONS_00015055-exon-sc0000203-1575043694:251631..253800TCONS_00015055-exon-sc0000203-1575043694:251631..253800Clytia hemisphaericaexon
TCONS_00015055-exon-sc0000203-1510915933:253865..255220TCONS_00015055-exon-sc0000203-1510915933:253865..255220Clytia hemisphaericaexon
TCONS_00015055-exon-sc0000203-1510915933:251631..253800TCONS_00015055-exon-sc0000203-1510915933:251631..253800Clytia hemisphaericaexon
TCONS_00015055-exon-sc0000203-1491911889:253865..255220TCONS_00015055-exon-sc0000203-1491911889:253865..255220Clytia hemisphaericaexon
TCONS_00015055-exon-sc0000203-1491911889:251631..253800TCONS_00015055-exon-sc0000203-1491911889:251631..253800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:251631..255220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.154476	0.175424	0.223737	0.288132	0.294998	0.0934077	0.284119	0.369254	0.262093	0.409754	0	0.469768	0.414642	0.3209	0.113172	0.228192	0.378664	0.296118	0.232108	0.195007	0.372962	1.05624	0.101147	0.279697	0.258802	0.335962	0.394372	0.746811	0.436247	0.526016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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