TCONS_00015054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015054
Unique NameTCONS_00015054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1195

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015054 ID=TCONS_00015054|Name=TCONS_00015054|organism=Clytia hemisphaerica|type=transcript|length=1195bp
GTTTTTAGTtcgaatttaaaaaagattcaaagaattggtaaaaatagaat
aaaagaatTGACTGTGATTTATTTTTAGGAAGataagataaaaatgaaat
ttgaatttggaTAAATATTGCATCATGGTGGagaatttttacaaattgtt
GGGTATATCTTCAGATGCCACTCAAGAAGAGATCAAAAAGTCTTACCAGA
AATCTGTACTGAAATGTCACCCAGATAAAGTCAAAGATGATGATCAACAA
GGAGATACAGATATGTTCATGAAACTTCAagaagcaaaagaaattctttt
agATTCCgataaaagaaaagaatatgATCGAAAACTCAAAGAAAGCGAAG
TTAAGAAATTCAAAGGgcctttattttcatctgaAACACTCGACAGCTTG
GAATATGAGGACACggaaaattattattatatgGAGTGCCGATGTAGTGG
ACTGTATGTTCTTGAAGAAAGTGAAGTTGACCAGACGAAAGATTTGCTGT
ACGTGCAATGTGATAATTGTACTTTCTATATTGAGGTCCAACCAACTTGA
TGTGATGTTGTGTCGCGGGATAAATTGGTGTGGAGTTAGAAGGTTTTAAA
ATATAAACCGTCACTCCCAAGAAACGAGGAAGTAACTGGTGACTGGTGAT
TTGCGTGTGATGATGGTATATAGGACCAAGGAACTTTAATAAAACAGTAT
AAAACATTTAAGTTTCTTGGTAGGACATTACCCAGCTGGCAAAcgacgtt
ttttcaacgttcatatTATAACGTTTTATGGAAGttgttttgtagatttt
ttcgaTTAGGAATGGACTCTGGTGATTGTGGATGCGGTTTCGTCGTTGGA
TCCCGCTTGGCCGTCATTGGACCCCGCTTGGCCGTCATTGGACATTGTAA
AGCAAAAAAAGCTTACTTGAAGACtgttttaattttataaaatgaaaaat
aaaataagaaatacGAATGCTCACAGgcgaatttttgaattttaagtaaC
TTTATACTCTGCCTGCTACAGGTACTCATTCCCGATAAATTATATGACTA
TTTGCTTGATTTTCGGTAAGATTTTCGGTGAGATTTTTTGATAAGGCTAC
TATTTTTTTAATCttaattaaataaaattttataccGTTGGGAAGATATT
TTAGAGCACTATAGTATTCGAGGAAAGAAAACCACAGAAGTTGTT
Run BLAST on NCBI

protein sequence of TCONS_00015054-protein

>TCONS_00015054-protein ID=TCONS_00015054-protein|Name=TCONS_00015054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MVENFYKLLGISSDATQEEIKKSYQKSVLKCHPDKVKDDDQQGDTDMFMK
LQEAKEILLDSDKRKEYDRKLKESEVKKFKGPLFSSETLDSLEYEDTENY
YYMECRCSGLYVLEESEVDQTKDLLYVQCDNCTFYIEVQPT
Run BLAST on NCBI

transcript from alignment at sc0000203:249793..251313-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015054 ID=TCONS_00015054|Name=TCONS_00015054|organism=Clytia hemisphaerica|type=transcript|length=1521bp|location=Sequence derived from alignment at sc0000203:249793..251313- (Clytia hemisphaerica)
GTTTTTAGTTCGAATTTAAAAAAGATTCAAAGAATTGGTAAAAATAGAAT
AAAAGAATTGACTGTGATTTATTTTTAGGAAGATAAGATAAAAATGAAAT
TTGAATTTGGATAAATATTGCATCATGGTGGAGAATTTTTACAAATTGTT
GGGTATATCTTCAGATGCCACTCAAGAAGAGATCAAAAAGTCTTACCAGA
AATCTGTACTGAAATGTCACCCAGATAAAGTCAAAGGTAAAATCTCCTTC
TCAAGGTTTCACCATCAGGGGAATCTTTGCTTAGGCTTTTGGGGAAGAAA
AATTATAGAATAATAATTACCCTACATAAAATTAGCCTCTTGGTATCAGG
CTAAAAAATTGATTGCTTGACCTCTTAACCCCATCCTCAAACACTTGGGA
ACCCAGGACTTGCAAAGTAAAAATTTTTAAATTTATTACTTTGAAAAAAG
GATCCAATCAAAGAATTGATAATTTGTCTCAGGACCAAAGAAGGCCTCAG
TAGACCAAATATCAAATCTTGTTACCATATTCATTTCAATTGTTTGATTT
CATATTCTTTAGATGATGATCAACAAGGAGATACAGATATGTTCATGAAA
CTTCAAGAAGCAAAAGAAATTCTTTTAGATTCCGATAAAAGAAAAGAATA
TGATCGAAAACTCAAAGAAAGCGAAGTTAAGAAATTCAAAGGGCCTTTAT
TTTCATCTGAAACACTCGACAGCTTGGAATATGAGGACACGGAAAATTAT
TATTATATGGAGTGCCGATGTAGTGGACTGTATGTTCTTGAAGAAAGTGA
AGTTGACCAGACGAAAGATTTGCTGTACGTGCAATGTGATAATTGTACTT
TCTATATTGAGGTCCAACCAACTTGATGTGATGTTGTGTCGCGGGATAAA
TTGGTGTGGAGTTAGAAGGTTTTAAAATATAAACCGTCACTCCCAAGAAA
CGAGGAAGTAACTGGTGACTGGTGATTTGCGTGTGATGATGGTATATAGG
ACCAAGGAACTTTAATAAAACAGTATAAAACATTTAAGTTTCTTGGTAGG
ACATTACCCAGCTGGCAAACGACGTTTTTTCAACGTTCATATTATAACGT
TTTATGGAAGTTGTTTTGTAGATTTTTTCGATTAGGAATGGACTCTGGTG
ATTGTGGATGCGGTTTCGTCGTTGGATCCCGCTTGGCCGTCATTGGACCC
CGCTTGGCCGTCATTGGACATTGTAAAGCAAAAAAAGCTTACTTGAAGAC
TGTTTTAATTTTATAAAATGAAAAATAAAATAAGAAATACGAATGCTCAC
AGGCGAATTTTTGAATTTTAAGTAACTTTATACTCTGCCTGCTACAGGTA
CTCATTCCCGATAAATTATATGACTATTTGCTTGATTTTCGGTAAGATTT
TCGGTGAGATTTTTTGATAAGGCTACTATTTTTTTAATCTTAATTAAATA
AAATTTTATACCGTTGGGAAGATATTTTAGAGCACTATAGTATTCGAGGA
AAGAAAACCACAGAAGTTGTT

Coding sequence (CDS) from alignment at sc0000203:249793..251313-

>TCONS_00015054 ID=TCONS_00015054|Name=TCONS_00015054|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000203:249793..251313- (Clytia hemisphaerica)
ATGATGATCAACAAGGAGATACAGATATGTTCATGAAACTTCAAGAAGCA
AAAGAAATTCTTTTAGATTCCGATAAAAGAAAAGAATATGATCGAAAACT
CAAAGAAAGCGAAGTTAAGAAATTCAAAGGGCCTTTATTTTCATCTGAAA
CACTCGACAGCTTGGAATATGAGGACACGGAAAATTATTATTATATGGAG
TGCCGATGTAGTGGACTGTATGTTCTTGAAGAAAGTGAAGTTGACCAGAC
GAAAGATTTGCTGTACGTGCAATGTGATAATTGTACTTTCTATATTGAGG
TCCAACCAACTTGAATGGTGGAGAATTTTTACAAATTGTTGGGTATATCT
TCAGATGCCACTCAAGAAGAGATCAAAAAGTCTTACCAGAAATCTGTACT
GAAATGTCACCCAGATAAAGTCAAAGATGATGATCAACAAGGAGATACAG
ATATGTTCATGAAACTTCAAGAAGCAAAAGAAATTCTTTTAGATTCCGAT
AAAAGAAAAGAATATGATCGAAAACTCAAAGAAAGCGAAGTTAAGAAATT
CAAAGGGCCTTTATTTTCATCTGAAACACTCGACAGCTTGGAATATGAGG
ACACGGAAAATTATTATTATATGGAGTGCCGATGTAGTGGACTGTATGTT
CTTGAAGAAAGTGAAGTTGACCAGACGAAAGATTTGCTGTACGTGCAATG
TGATAATTGTACTTTCTATATTGAGGTCCAACCAACTTGAATGGTGGAGA
ATTTTTACAAATTGTTGGGTATATCTTCAGATGCCACTCAAGAAGAGATC
AAAAAGTCTTACCAGAAATCTGTACTGAAATGTCACCCAGATAAAGTCAA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008424XLOC_008424Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015054-proteinTCONS_00015054-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015054-exon-sc0000203-1575043694:251078..251313TCONS_00015054-exon-sc0000203-1575043694:251078..251313Clytia hemisphaericaexon
TCONS_00015054-exon-sc0000203-1575043694:249793..250751TCONS_00015054-exon-sc0000203-1575043694:249793..250751Clytia hemisphaericaexon
TCONS_00015054-exon-sc0000203-1510915933:251078..251313TCONS_00015054-exon-sc0000203-1510915933:251078..251313Clytia hemisphaericaexon
TCONS_00015054-exon-sc0000203-1510915933:249793..250751TCONS_00015054-exon-sc0000203-1510915933:249793..250751Clytia hemisphaericaexon
TCONS_00015054-exon-sc0000203-1491911889:251078..251313TCONS_00015054-exon-sc0000203-1491911889:251078..251313Clytia hemisphaericaexon
TCONS_00015054-exon-sc0000203-1491911889:249793..250751TCONS_00015054-exon-sc0000203-1491911889:249793..250751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:249793..251313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.10937	3.99999	23.2626	25.4293	11.4514	7.86043	12.7677	13.5121	6.70092	7.13589	5.94201	5.58349	3.51773	2.9822	5.14873	4.49485	10.6154	13.1783	2.79219	4.60287	9.81048	8.6541	8.08611	8.85174	7.49455	8.41261	5.52583	4.10706	3.83392	4.63856
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR007872Znf_DHP
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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