TCONS_00015047 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015047
Unique NameTCONS_00015047
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015047 ID=TCONS_00015047|Name=TCONS_00015047|organism=Clytia hemisphaerica|type=transcript|length=1468bp
CTTTACTTTTCACCAGCTCACACATGTGGCCAATTTGTTTGAACCTCTTG
TAATCACATGAATGAAAGAAAGATAGCTGACATGCTGATCTAAATCATTT
TGCAAAGTTACAAACATCCCCTACTTGTGTGTAGTCTGACACCGCAACAT
TCAAACAAAGTGCAACCTGTATGTCTGGTAGACCACGCCGACACATCGAA
CCATACGACTTTGCAGTTTATGGTACTACTGGGAAGAAGGTTCCTCCCAA
ACACCAACGATCCCTAGCTGATCAACCTTCACAAAACCGATCCGTAGCCG
ATCAACCTTCACAAGACCGATCCGTAGCCGATCTATCTCCACAACACAGA
TCCGTAGCCGATCAACCTTCACAAGACCGATCCGTAACCGATCAATCTTC
ACAACTCCGATCCGTAGCCGATCAATCTTCACAACTCCGATCCGTAGCCG
ATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGA
TCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTC
ACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTG
ATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGA
TCCGTAGTCGATCAACCCCCACATCAACAATCTGTATTTGATTCATCTCA
TCAACAATATACTGACTCAAATAACTTGCCGTCTGACTTAAACTTTGACG
ACATCACTCTACGACCCATTATCAAAAGCAATACGCGCCAAGCTGAGCAT
TGAATCAATCAAGCAAACGATTGACAACATCAAGCCATCCCTGATATCTG
ACTTCAAGGATTTGAGTGACGCAAATCTCATTCAACTCAAGGAGGCATCA
ACATCTATCAACAACACTGTCATCACTATTTCAGAGAGGTATGAACGTTT
ACTTCAACAAGATATCACTGATCCAACGCTTCTCACTGAACTTGATAAAA
TCGGCATAGCCCAGAAAAAGCTTTGCGAATCTGAGACCAAATATCAAGGA
GACCTTGACAAGGAAATCATTTCCAGAGACGTCTACAAACAACGGACATT
TGATGAATCCAAGCTCAACATCAAACTGGACAAATTCTCGGGGTATGAAA
GTTCAATGGACATCTACACATTTCAGACAGCCTTCGAGAAGATATACAAA
CGAACAACTCCACATCATATGCTACCTGATCTGCTAAAGAACAATCTGCT
AAAAGGAGGTGCTTTATTCCTTGTCAAGACCCTCGAAGACATCAACGTCA
TCTGGGCCCGGCTGAAGTCTGCCTACGGAGACACCAAACTGTTACTTGCA
AAGAAGCTGAAAACAATCATCGAAAATGAATCTCTTGGTCGAAGACAAGA
CTCTGAACATCTAATCGATACTCTGAACAACCTTATCAATACACTAAAGG
AATTGATTTCACTAGCTG
Run BLAST on NCBI

protein sequence of TCONS_00015047-protein

>TCONS_00015047-protein ID=TCONS_00015047-protein|Name=TCONS_00015047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MSGRPRRHIEPYDFAVYGTTGKKVPPKHQRSLADQPSQNRSVADQPSQDR
SVADLSPQHRSVADQPSQDRSVTDQSSQLRSVADQSSQLRSVADQSSQLR
SVADQSSQLRSVADQSSQLRSVADQSSQLRSVADQSSQLRSVADQSSQLR
SVADQSSQLRSVVDQPPHQQSVFDSSHQQYTDSNNLPSDLNFDDITLRPI
IKSNTRQAEH
Run BLAST on NCBI

transcript from alignment at sc0000203:166966..168758-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015047 ID=TCONS_00015047|Name=TCONS_00015047|organism=Clytia hemisphaerica|type=transcript|length=1793bp|location=Sequence derived from alignment at sc0000203:166966..168758- (Clytia hemisphaerica)
CTTTACTTTTCACCAGCTCACACATGTGGCCAATTTGGTAAGTTTTTTCA
GCCACTCCTTTTGCTTTTCTGTTTGCATGGCCACATTTTGTTTTGTTTGC
CTCAGCAGCTCATCAGTCCAGTGTTGAGGCACAACACCTGGACTTAGGTT
AAGTTAGGTTAAGTTTTTCCTAGTTTCTTTACAATATATTTTGATATCTT
GATAGCTATACATTTTCCCAGATGCCTTTCTTACAGGATCTGGACTTAGC
CATTTTGTCATGGTCTGGACTTAGTCATTTTTCACATTCTAGTCTTAGAA
TTTAGTTCTTTTTATTTACTTTGTTTCTAGTTACTTATGTTTGTCTTAAT
TTCTTTTTACAGTTTGAACCTCTTGTAATCACATGAATGAAAGAAAGATA
GCTGACATGCTGATCTAAATCATTTTGCAAAGTTACAAACATCCCCTACT
TGTGTGTAGTCTGACACCGCAACATTCAAACAAAGTGCAACCTGTATGTC
TGGTAGACCACGCCGACACATCGAACCATACGACTTTGCAGTTTATGGTA
CTACTGGGAAGAAGGTTCCTCCCAAACACCAACGATCCCTAGCTGATCAA
CCTTCACAAAACCGATCCGTAGCCGATCAACCTTCACAAGACCGATCCGT
AGCCGATCTATCTCCACAACACAGATCCGTAGCCGATCAACCTTCACAAG
ACCGATCCGTAACCGATCAATCTTCACAACTCCGATCCGTAGCCGATCAA
TCTTCACAACTCCGATCCGTAGCCGATCAATCTTCACAACTCCGATCCGT
AGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAAC
TCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAA
TCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGT
AGCTGATCAATCTTCACAACTCCGATCCGTAGTCGATCAACCCCCACATC
AACAATCTGTATTTGATTCATCTCATCAACAATATACTGACTCAAATAAC
TTGCCGTCTGACTTAAACTTTGACGACATCACTCTACGACCCATTATCAA
AAGCAATACGCGCCAAGCTGAGCATTGAATCAATCAAGCAAACGATTGAC
AACATCAAGCCATCCCTGATATCTGACTTCAAGGATTTGAGTGACGCAAA
TCTCATTCAACTCAAGGAGGCATCAACATCTATCAACAACACTGTCATCA
CTATTTCAGAGAGGTATGAACGTTTACTTCAACAAGATATCACTGATCCA
ACGCTTCTCACTGAACTTGATAAAATCGGCATAGCCCAGAAAAAGCTTTG
CGAATCTGAGACCAAATATCAAGGAGACCTTGACAAGGAAATCATTTCCA
GAGACGTCTACAAACAACGGACATTTGATGAATCCAAGCTCAACATCAAA
CTGGACAAATTCTCGGGGTATGAAAGTTCAATGGACATCTACACATTTCA
GACAGCCTTCGAGAAGATATACAAACGAACAACTCCACATCATATGCTAC
CTGATCTGCTAAAGAACAATCTGCTAAAAGGAGGTGCTTTATTCCTTGTC
AAGACCCTCGAAGACATCAACGTCATCTGGGCCCGGCTGAAGTCTGCCTA
CGGAGACACCAAACTGTTACTTGCAAAGAAGCTGAAAACAATCATCGAAA
ATGAATCTCTTGGTCGAAGACAAGACTCTGAACATCTAATCGATACTCTG
AACAACCTTATCAATACACTAAAGGAATTGATTTCACTAGCTG

Coding sequence (CDS) from alignment at sc0000203:166966..168758-

>TCONS_00015047 ID=TCONS_00015047|Name=TCONS_00015047|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000203:166966..168758- (Clytia hemisphaerica)
ATGTCTGGTAGACCACGCCGACACATCGAACCATACGACTTTGCAGTTTA
TGGTACTACTGGGAAGAAGGTTCCTCCCAAACACCAACGATCCCTAGCTG
ATCAACCTTCACAAAACCGATCCGTAGCCGATCAACCTTCACAAGACCGA
TCCGTAGCCGATCTATCTCCACAACACAGATCCGTAGCCGATCAACCTTC
ACAAGACCGATCCGTAACCGATCAATCTTCACAACTCCGATCCGTAGCCG
ATCAATCTTCACAACTCCGATCCGTAGCCGATCAATCTTCACAACTCCGA
TCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTC
ACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGCTG
ATCAATCTTCACAACTCCGATCCGTAGCTGATCAATCTTCACAACTCCGA
TCCGTAGCTGATCAATCTTCACAACTCCGATCCGTAGTCGATCAACCCCC
ACATCAACAATCTGTATTTGATTCATCTCATCAACAATATACTGACTCAA
ATAACTTGCCGTCTGACTTAAACTTTGACGACATCACTCTACGACCCATT
ATCAAAAGCAATACGCGCCAAGCTGAGCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008419XLOC_008419Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015047-proteinTCONS_00015047-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015047-exon-sc0000203-1575043694:168722..168758TCONS_00015047-exon-sc0000203-1575043694:168722..168758Clytia hemisphaericaexon
TCONS_00015047-exon-sc0000203-1575043694:166966..168396TCONS_00015047-exon-sc0000203-1575043694:166966..168396Clytia hemisphaericaexon
TCONS_00015047-exon-sc0000203-1510915933:168722..168758TCONS_00015047-exon-sc0000203-1510915933:168722..168758Clytia hemisphaericaexon
TCONS_00015047-exon-sc0000203-1510915933:166966..168396TCONS_00015047-exon-sc0000203-1510915933:166966..168396Clytia hemisphaericaexon
TCONS_00015047-exon-sc0000203-1491911889:168722..168758TCONS_00015047-exon-sc0000203-1491911889:168722..168758Clytia hemisphaericaexon
TCONS_00015047-exon-sc0000203-1491911889:166966..168396TCONS_00015047-exon-sc0000203-1491911889:166966..168396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:166966..168758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56221	1.42323	2.58858e-07	0.688095	0	0	0	0	0	0.545287	0.608322	0.166486	0	0	0.286855	0.349346	0.422322	0.212441	0.262574	0.855779	0.20464	0.498916	0.132877	0.372106	0.0964516	0.36902	0	0.390357	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015047 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top